data_6DPA # _model_server_result.job_id zbmPv1DY2H6SKDdcPK0x-g _model_server_result.datetime_utc '2024-11-16 23:38:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dpa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 6DPA # _exptl.entry_id 6DPA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.25 _cell.angle_gamma 90 _cell.entry_id 6DPA _cell.length_a 81.199 _cell.length_b 37.746 _cell.length_c 62.051 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DPA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 R N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' U 4 B U 4 1_555 C P C 1 b C 5 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.585 sing metalc ? metalc1 A OD2 ASP 11 A ASP 71 1_555 E MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc2 A OD1 ASP 11 A ASP 71 1_555 F MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc3 A OE1 GLU 49 A GLU 109 1_555 F MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 A OD1 ASP 72 A ASP 132 1_555 F MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc5 A OD2 ASP 72 A ASP 132 1_555 F MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc6 A OD2 ASP 72 A ASP 132 1_555 R K K . A K 214 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.285 ? metalc ? metalc7 A OD1 ASP 132 A ASP 192 1_555 E MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc8 A OD1 ASP 132 A ASP 192 1_555 G K K . A K 203 1_555 ? ? ? ? C ? ? ? ? ? ? ? 3.211 ? metalc ? metalc9 E MN MN . A MN 201 1_555 T O HOH . A HOH 305 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.266 ? metalc ? metalc10 E MN MN . A MN 201 1_555 T O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? metalc ? metalc11 E MN MN . A MN 201 1_555 T O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc12 E MN MN . A MN 201 1_555 C OP3 C 1 b C 5 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.231 ? metalc ? metalc13 E MN MN . A MN 201 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.38 ? metalc ? metalc14 E MN MN . A MN 201 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.168 ? metalc ? metalc15 F MN MN . A MN 202 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.468 ? metalc ? metalc16 F MN MN . A MN 202 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.69 ? metalc ? metalc17 G K K . A K 203 1_555 T O HOH . A HOH 305 1_555 ? C ? ? C ? ? ? ? ? ? ? 2.649 ? metalc ? metalc18 G K K . A K 203 1_555 T O HOH . A HOH 315 1_555 ? C ? ? ? ? ? ? ? ? ? ? 3.485 ? metalc ? metalc19 G K K . A K 203 1_555 C OP2 G 2 b G 6 1_555 ? C ? ? ? ? ? ? ? ? ? ? 3.201 ? metalc ? metalc20 R K K . A K 214 1_555 T O HOH . A HOH 346 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.43 ? metalc ? metalc21 R K K . A K 214 1_555 U O HOH . B HOH 206 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc22 R K K . A K 214 1_555 C OP2 C 1 b C 5 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.84 ? metalc ? metalc23 D O4 DT 4 C DT 4 1_555 S K K . C K 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.09 ? metalc ? metalc24 D O6 DG 5 C DG 5 1_555 S K K . C K 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.658 ? metalc ? metalc25 S K K . C K 101 1_555 W O HOH . C HOH 211 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.194 ? hydrog WATSON-CRICK hydrog1 B N1 A 1 B A 1 1_555 D N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 A 1 B A 1 1_555 D O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 C 2 B C 2 1_555 D N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N4 C 2 B C 2 1_555 D O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O2 C 2 B C 2 1_555 D N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 A 3 B A 3 1_555 D N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 A 3 B A 3 1_555 D O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 U 4 B U 4 1_555 D N1 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 U 4 B U 4 1_555 D N6 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N3 C 1 b C 5 1_555 D N1 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N4 C 1 b C 5 1_555 D O6 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O2 C 1 b C 5 1_555 D N2 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 G 2 b G 6 1_555 D N3 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N2 G 2 b G 6 1_555 D O2 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O6 G 2 b G 6 1_555 D N4 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DPA _atom_sites.fract_transf_matrix[1][1] 0.012315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001348 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MN A 1 201 201 MN MN . F 5 MN A 1 202 202 MN MN . G 6 K A 1 203 211 K K . H 7 IOD A 1 204 1 IOD IOD . I 7 IOD A 1 205 2 IOD IOD . J 7 IOD A 1 206 4 IOD IOD . K 7 IOD A 1 207 3 IOD IOD . L 8 GOL A 1 208 1 GOL GOL . M 8 GOL A 1 209 2 GOL GOL . N 8 GOL A 1 210 4 GOL GOL . O 9 EDO A 1 211 5 EDO EDO . P 9 EDO A 1 212 6 EDO EDO . Q 9 EDO A 1 213 3 EDO EDO . R 6 K A 1 214 212 K K . S 6 K C 1 101 213 K K . T 10 HOH A 1 301 113 HOH HOH . T 10 HOH A 2 302 49 HOH HOH . T 10 HOH A 3 303 190 HOH HOH . T 10 HOH A 4 304 223 HOH HOH . T 10 HOH A 5 305 88 HOH HOH . T 10 HOH A 6 306 193 HOH HOH . T 10 HOH A 7 307 52 HOH HOH . T 10 HOH A 8 308 93 HOH HOH . T 10 HOH A 9 309 16 HOH HOH . T 10 HOH A 10 310 62 HOH HOH . T 10 HOH A 11 311 17 HOH HOH . T 10 HOH A 12 312 200 HOH HOH . T 10 HOH A 13 313 105 HOH HOH . T 10 HOH A 14 314 194 HOH HOH . T 10 HOH A 15 315 232 HOH HOH . T 10 HOH A 16 316 213 HOH HOH . T 10 HOH A 17 317 174 HOH HOH . T 10 HOH A 18 318 64 HOH HOH . T 10 HOH A 19 319 154 HOH HOH . T 10 HOH A 20 320 234 HOH HOH . T 10 HOH A 21 321 130 HOH HOH . T 10 HOH A 22 322 216 HOH HOH . T 10 HOH A 23 323 60 HOH HOH . T 10 HOH A 24 324 21 HOH HOH . T 10 HOH A 25 325 215 HOH HOH . T 10 HOH A 26 326 143 HOH HOH . T 10 HOH A 27 327 2 HOH HOH . T 10 HOH A 28 328 167 HOH HOH . T 10 HOH A 29 329 56 HOH HOH . T 10 HOH A 30 330 47 HOH HOH . T 10 HOH A 31 331 168 HOH HOH . T 10 HOH A 32 332 96 HOH HOH . T 10 HOH A 33 333 86 HOH HOH . T 10 HOH A 34 334 42 HOH HOH . T 10 HOH A 35 335 202 HOH HOH . T 10 HOH A 36 336 46 HOH HOH . T 10 HOH A 37 337 20 HOH HOH . T 10 HOH A 38 338 57 HOH HOH . T 10 HOH A 39 339 129 HOH HOH . T 10 HOH A 40 340 14 HOH HOH . T 10 HOH A 41 341 28 HOH HOH . T 10 HOH A 42 342 84 HOH HOH . T 10 HOH A 43 343 44 HOH HOH . T 10 HOH A 44 344 69 HOH HOH . T 10 HOH A 45 345 192 HOH HOH . T 10 HOH A 46 346 22 HOH HOH . T 10 HOH A 47 347 226 HOH HOH . T 10 HOH A 48 348 8 HOH HOH . T 10 HOH A 49 349 212 HOH HOH . T 10 HOH A 50 350 126 HOH HOH . T 10 HOH A 51 351 120 HOH HOH . T 10 HOH A 52 352 169 HOH HOH . T 10 HOH A 53 353 63 HOH HOH . T 10 HOH A 54 354 156 HOH HOH . T 10 HOH A 55 355 186 HOH HOH . T 10 HOH A 56 356 50 HOH HOH . T 10 HOH A 57 357 9 HOH HOH . T 10 HOH A 58 358 34 HOH HOH . T 10 HOH A 59 359 135 HOH HOH . T 10 HOH A 60 360 161 HOH HOH . T 10 HOH A 61 361 228 HOH HOH . T 10 HOH A 62 362 219 HOH HOH . T 10 HOH A 63 363 4 HOH HOH . T 10 HOH A 64 364 205 HOH HOH . T 10 HOH A 65 365 76 HOH HOH . T 10 HOH A 66 366 32 HOH HOH . T 10 HOH A 67 367 208 HOH HOH . T 10 HOH A 68 368 59 HOH HOH . T 10 HOH A 69 369 214 HOH HOH . T 10 HOH A 70 370 26 HOH HOH . T 10 HOH A 71 371 53 HOH HOH . T 10 HOH A 72 372 165 HOH HOH . T 10 HOH A 73 373 104 HOH HOH . T 10 HOH A 74 374 172 HOH HOH . T 10 HOH A 75 375 108 HOH HOH . T 10 HOH A 76 376 160 HOH HOH . T 10 HOH A 77 377 153 HOH HOH . T 10 HOH A 78 378 54 HOH HOH . T 10 HOH A 79 379 106 HOH HOH . T 10 HOH A 80 380 155 HOH HOH . T 10 HOH A 81 381 162 HOH HOH . T 10 HOH A 82 382 124 HOH HOH . T 10 HOH A 83 383 185 HOH HOH . T 10 HOH A 84 384 180 HOH HOH . T 10 HOH A 85 385 95 HOH HOH . T 10 HOH A 86 386 18 HOH HOH . T 10 HOH A 87 387 1 HOH HOH . T 10 HOH A 88 388 139 HOH HOH . T 10 HOH A 89 389 23 HOH HOH . T 10 HOH A 90 390 55 HOH HOH . T 10 HOH A 91 391 112 HOH HOH . T 10 HOH A 92 392 197 HOH HOH . T 10 HOH A 93 393 182 HOH HOH . T 10 HOH A 94 394 51 HOH HOH . T 10 HOH A 95 395 198 HOH HOH . T 10 HOH A 96 396 66 HOH HOH . T 10 HOH A 97 397 151 HOH HOH . T 10 HOH A 98 398 91 HOH HOH . T 10 HOH A 99 399 127 HOH HOH . T 10 HOH A 100 400 7 HOH HOH . T 10 HOH A 101 401 24 HOH HOH . T 10 HOH A 102 402 122 HOH HOH . T 10 HOH A 103 403 207 HOH HOH . T 10 HOH A 104 404 171 HOH HOH . T 10 HOH A 105 405 92 HOH HOH . T 10 HOH A 106 406 163 HOH HOH . T 10 HOH A 107 407 210 HOH HOH . T 10 HOH A 108 408 227 HOH HOH . T 10 HOH A 109 409 176 HOH HOH . T 10 HOH A 110 410 98 HOH HOH . T 10 HOH A 111 411 128 HOH HOH . T 10 HOH A 112 412 132 HOH HOH . T 10 HOH A 113 413 68 HOH HOH . T 10 HOH A 114 414 224 HOH HOH . T 10 HOH A 115 415 148 HOH HOH . T 10 HOH A 116 416 27 HOH HOH . T 10 HOH A 117 417 218 HOH HOH . T 10 HOH A 118 418 102 HOH HOH . T 10 HOH A 119 419 225 HOH HOH . T 10 HOH A 120 420 170 HOH HOH . T 10 HOH A 121 421 222 HOH HOH . T 10 HOH A 122 422 90 HOH HOH . T 10 HOH A 123 423 73 HOH HOH . T 10 HOH A 124 424 123 HOH HOH . T 10 HOH A 125 425 166 HOH HOH . T 10 HOH A 126 426 74 HOH HOH . T 10 HOH A 127 427 144 HOH HOH . T 10 HOH A 128 428 189 HOH HOH . T 10 HOH A 129 429 40 HOH HOH . T 10 HOH A 130 430 35 HOH HOH . T 10 HOH A 131 431 179 HOH HOH . T 10 HOH A 132 432 136 HOH HOH . T 10 HOH A 133 433 82 HOH HOH . T 10 HOH A 134 434 121 HOH HOH . T 10 HOH A 135 435 61 HOH HOH . T 10 HOH A 136 436 206 HOH HOH . T 10 HOH A 137 437 203 HOH HOH . T 10 HOH A 138 438 43 HOH HOH . U 10 HOH B 1 201 97 HOH HOH . U 10 HOH B 2 202 109 HOH HOH . U 10 HOH B 3 203 147 HOH HOH . U 10 HOH B 4 204 15 HOH HOH . U 10 HOH B 5 205 150 HOH HOH . U 10 HOH B 6 206 229 HOH HOH . U 10 HOH B 7 207 67 HOH HOH . U 10 HOH B 8 208 79 HOH HOH . U 10 HOH B 9 209 38 HOH HOH . U 10 HOH B 10 210 80 HOH HOH . U 10 HOH B 11 211 220 HOH HOH . V 10 HOH b 1 101 149 HOH HOH . V 10 HOH b 2 102 133 HOH HOH . V 10 HOH b 3 103 233 HOH HOH . V 10 HOH b 4 104 217 HOH HOH . V 10 HOH b 5 105 230 HOH HOH . V 10 HOH b 6 106 231 HOH HOH . W 10 HOH C 1 201 11 HOH HOH . W 10 HOH C 2 202 114 HOH HOH . W 10 HOH C 3 203 209 HOH HOH . W 10 HOH C 4 204 191 HOH HOH . W 10 HOH C 5 205 30 HOH HOH . W 10 HOH C 6 206 19 HOH HOH . W 10 HOH C 7 207 110 HOH HOH . W 10 HOH C 8 208 199 HOH HOH . W 10 HOH C 9 209 221 HOH HOH . W 10 HOH C 10 210 33 HOH HOH . W 10 HOH C 11 211 196 HOH HOH . W 10 HOH C 12 212 78 HOH HOH . W 10 HOH C 13 213 142 HOH HOH . W 10 HOH C 14 214 58 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id C _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 21.827 _atom_site.Cartn_y -9.864 _atom_site.Cartn_z 9.358 _atom_site.occupancy 0.2 _atom_site.B_iso_or_equiv 40.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #