data_6DPJ # _model_server_result.job_id 5nTBhj8X9iYP1XSR6MGmcQ _model_server_result.datetime_utc '2025-01-11 04:57:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":207}' # _entry.id 6DPJ # _exptl.entry_id 6DPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.23 _cell.angle_gamma 90 _cell.entry_id 6DPJ _cell.length_a 81.884 _cell.length_b 37.549 _cell.length_c 62.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' U 4 B U 4 1_555 C P C 1 b C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.588 sing metalc ? metalc1 A OD2 ASP 17 A ASP 71 1_555 E MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 A OD1 ASP 17 A ASP 71 1_555 F MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc3 A OE1 GLU 55 A GLU 109 1_555 F MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 A OD1 ASP 78 A ASP 132 1_555 F MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc5 A OD2 ASP 78 A ASP 132 1_555 F MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc6 A OD1 ASP 138 A ASP 192 1_555 E MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc7 A OD1 ASP 138 A ASP 192 1_555 G K K . A K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.116 ? metalc ? metalc8 A O TYR 139 A TYR 193 1_555 G K K . A K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc9 E MN MN . A MN 201 1_555 P O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc10 E MN MN . A MN 201 1_555 P O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc11 E MN MN . A MN 201 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc12 E MN MN . A MN 201 1_555 R O HOH . b HOH 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc13 F MN MN . A MN 202 1_555 B O3' U 4 B U 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc14 F MN MN . A MN 202 1_555 C OP1 C 1 b C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc15 G K K . A K 203 1_555 P O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.277 ? metalc ? metalc16 G K K . A K 203 1_555 P O HOH . A HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc17 G K K . A K 203 1_555 C OP2 G 2 b G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc18 G K K . A K 203 1_555 R O HOH . b HOH 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc19 D O4 DT 4 C DT 4 1_555 O K K . C K 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.33 ? metalc ? metalc20 D O6 DG 5 C DG 5 1_555 O K K . C K 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.586 ? metalc ? metalc21 O K K . C K 101 1_555 S O HOH . C HOH 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.182 ? hydrog WATSON-CRICK hydrog1 B N1 A 1 B A 1 1_555 D N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 A 1 B A 1 1_555 D O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 C 2 B C 2 1_555 D N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N4 C 2 B C 2 1_555 D O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O2 C 2 B C 2 1_555 D N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 A 3 B A 3 1_555 D N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 A 3 B A 3 1_555 D O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 U 4 B U 4 1_555 D N1 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 U 4 B U 4 1_555 D N6 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N3 C 1 b C 5 1_555 D N1 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N4 C 1 b C 5 1_555 D O6 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O2 C 1 b C 5 1_555 D N2 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 G 2 b G 6 1_555 D N3 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N2 G 2 b G 6 1_555 D O2 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O6 G 2 b G 6 1_555 D N4 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DPJ _atom_sites.fract_transf_matrix[1][1] 0.012212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001549 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026632 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MN A 1 201 201 MN MN . F 5 MN A 1 202 202 MN MN . G 6 K A 1 203 211 K K . H 7 IOD A 1 204 1 IOD IOD . I 7 IOD A 1 205 2 IOD IOD . J 7 IOD A 1 206 3 IOD IOD . K 7 IOD A 1 207 4 IOD IOD . L 8 EDO A 1 208 1 EDO EDO . M 8 EDO A 1 209 2 EDO EDO . N 9 GOL A 1 210 3 GOL GOL . O 6 K C 1 101 213 K K . P 10 HOH A 1 301 279 HOH HOH . P 10 HOH A 2 302 238 HOH HOH . P 10 HOH A 3 303 105 HOH HOH . P 10 HOH A 4 304 200 HOH HOH . P 10 HOH A 5 305 205 HOH HOH . P 10 HOH A 6 306 53 HOH HOH . P 10 HOH A 7 307 216 HOH HOH . P 10 HOH A 8 308 192 HOH HOH . P 10 HOH A 9 309 292 HOH HOH . P 10 HOH A 10 310 97 HOH HOH . P 10 HOH A 11 311 63 HOH HOH . P 10 HOH A 12 312 60 HOH HOH . P 10 HOH A 13 313 130 HOH HOH . P 10 HOH A 14 314 298 HOH HOH . P 10 HOH A 15 315 143 HOH HOH . P 10 HOH A 16 316 120 HOH HOH . P 10 HOH A 17 317 232 HOH HOH . P 10 HOH A 18 318 169 HOH HOH . P 10 HOH A 19 319 202 HOH HOH . P 10 HOH A 20 320 167 HOH HOH . P 10 HOH A 21 321 22 HOH HOH . P 10 HOH A 22 322 274 HOH HOH . P 10 HOH A 23 323 8 HOH HOH . P 10 HOH A 24 324 59 HOH HOH . P 10 HOH A 25 325 276 HOH HOH . P 10 HOH A 26 326 168 HOH HOH . P 10 HOH A 27 327 57 HOH HOH . P 10 HOH A 28 328 271 HOH HOH . P 10 HOH A 29 329 287 HOH HOH . P 10 HOH A 30 330 186 HOH HOH . P 10 HOH A 31 331 47 HOH HOH . P 10 HOH A 32 332 56 HOH HOH . P 10 HOH A 33 333 34 HOH HOH . P 10 HOH A 34 334 14 HOH HOH . P 10 HOH A 35 335 28 HOH HOH . P 10 HOH A 36 336 21 HOH HOH . P 10 HOH A 37 337 64 HOH HOH . P 10 HOH A 38 338 84 HOH HOH . P 10 HOH A 39 339 62 HOH HOH . P 10 HOH A 40 340 96 HOH HOH . P 10 HOH A 41 341 2 HOH HOH . P 10 HOH A 42 342 126 HOH HOH . P 10 HOH A 43 343 44 HOH HOH . P 10 HOH A 44 344 69 HOH HOH . P 10 HOH A 45 345 277 HOH HOH . P 10 HOH A 46 346 155 HOH HOH . P 10 HOH A 47 347 129 HOH HOH . P 10 HOH A 48 348 212 HOH HOH . P 10 HOH A 49 349 185 HOH HOH . P 10 HOH A 50 350 86 HOH HOH . P 10 HOH A 51 351 219 HOH HOH . P 10 HOH A 52 352 76 HOH HOH . P 10 HOH A 53 353 243 HOH HOH . P 10 HOH A 54 354 208 HOH HOH . P 10 HOH A 55 355 240 HOH HOH . P 10 HOH A 56 356 7 HOH HOH . P 10 HOH A 57 357 161 HOH HOH . P 10 HOH A 58 358 280 HOH HOH . P 10 HOH A 59 359 4 HOH HOH . P 10 HOH A 60 360 1 HOH HOH . P 10 HOH A 61 361 50 HOH HOH . P 10 HOH A 62 362 18 HOH HOH . P 10 HOH A 63 363 104 HOH HOH . P 10 HOH A 64 364 257 HOH HOH . P 10 HOH A 65 365 20 HOH HOH . P 10 HOH A 66 366 9 HOH HOH . P 10 HOH A 67 367 27 HOH HOH . P 10 HOH A 68 368 153 HOH HOH . P 10 HOH A 69 369 49 HOH HOH . P 10 HOH A 70 370 26 HOH HOH . P 10 HOH A 71 371 93 HOH HOH . P 10 HOH A 72 372 180 HOH HOH . P 10 HOH A 73 373 288 HOH HOH . P 10 HOH A 74 374 122 HOH HOH . P 10 HOH A 75 375 182 HOH HOH . P 10 HOH A 76 376 139 HOH HOH . P 10 HOH A 77 377 283 HOH HOH . P 10 HOH A 78 378 16 HOH HOH . P 10 HOH A 79 379 171 HOH HOH . P 10 HOH A 80 380 198 HOH HOH . P 10 HOH A 81 381 272 HOH HOH . P 10 HOH A 82 382 124 HOH HOH . P 10 HOH A 83 383 295 HOH HOH . P 10 HOH A 84 384 278 HOH HOH . P 10 HOH A 85 385 151 HOH HOH . P 10 HOH A 86 386 207 HOH HOH . P 10 HOH A 87 387 82 HOH HOH . P 10 HOH A 88 388 66 HOH HOH . P 10 HOH A 89 389 176 HOH HOH . P 10 HOH A 90 390 291 HOH HOH . P 10 HOH A 91 391 68 HOH HOH . P 10 HOH A 92 392 297 HOH HOH . P 10 HOH A 93 393 102 HOH HOH . P 10 HOH A 94 394 286 HOH HOH . P 10 HOH A 95 395 128 HOH HOH . P 10 HOH A 96 396 73 HOH HOH . P 10 HOH A 97 397 123 HOH HOH . P 10 HOH A 98 398 237 HOH HOH . P 10 HOH A 99 399 293 HOH HOH . P 10 HOH A 100 400 144 HOH HOH . P 10 HOH A 101 401 74 HOH HOH . P 10 HOH A 102 402 281 HOH HOH . P 10 HOH A 103 403 179 HOH HOH . P 10 HOH A 104 404 203 HOH HOH . Q 10 HOH B 1 101 79 HOH HOH . Q 10 HOH B 2 102 299 HOH HOH . Q 10 HOH B 3 103 80 HOH HOH . Q 10 HOH B 4 104 260 HOH HOH . Q 10 HOH B 5 105 259 HOH HOH . Q 10 HOH B 6 106 264 HOH HOH . Q 10 HOH B 7 107 284 HOH HOH . Q 10 HOH B 8 108 290 HOH HOH . R 10 HOH b 1 101 88 HOH HOH . R 10 HOH b 2 102 233 HOH HOH . R 10 HOH b 3 103 294 HOH HOH . R 10 HOH b 4 104 231 HOH HOH . R 10 HOH b 5 105 133 HOH HOH . S 10 HOH C 1 201 11 HOH HOH . S 10 HOH C 2 202 78 HOH HOH . S 10 HOH C 3 203 110 HOH HOH . S 10 HOH C 4 204 209 HOH HOH . S 10 HOH C 5 205 30 HOH HOH . S 10 HOH C 6 206 19 HOH HOH . S 10 HOH C 7 207 33 HOH HOH . S 10 HOH C 8 208 196 HOH HOH . S 10 HOH C 9 209 246 HOH HOH . S 10 HOH C 10 210 282 HOH HOH . S 10 HOH C 11 211 114 HOH HOH . S 10 HOH C 12 212 275 HOH HOH . S 10 HOH C 13 213 236 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 7 _atom_site.Cartn_x 21.848 _atom_site.Cartn_y 5.006 _atom_site.Cartn_z 38.546 _atom_site.occupancy 0.35 _atom_site.B_iso_or_equiv 60.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 207 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #