data_6DPQ # _model_server_result.job_id ecdZ-2VO9pC4M-7xJuRaAg _model_server_result.datetime_utc '2024-11-25 09:43:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6DPQ # _exptl.entry_id 6DPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DPQ _cell.length_a 85.604 _cell.length_b 96.565 _cell.length_c 130.764 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 A CYS 308 1_555 B SG CYS 298 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A NE2 HIS 336 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 K O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 198 n n CHA C4D HEM doub 199 n n CHA HHA HEM sing 200 n n CHB C4A HEM sing 201 n n CHB C1B HEM doub 202 n n CHB HHB HEM sing 203 n n CHC C4B HEM sing 204 n n CHC C1C HEM doub 205 n n CHC HHC HEM sing 206 n n CHD C4C HEM doub 207 n n CHD C1D HEM sing 208 n n CHD HHD HEM sing 209 n n C1A C2A HEM doub 210 n y C1A NA HEM sing 211 n y C2A C3A HEM sing 212 n y C2A CAA HEM sing 213 n n C3A C4A HEM doub 214 n y C3A CMA HEM sing 215 n n C4A NA HEM sing 216 n y CMA HMA HEM sing 217 n n CMA HMAA HEM sing 218 n n CMA HMAB HEM sing 219 n n CAA CBA HEM sing 220 n n CAA HAA HEM sing 221 n n CAA HAAA HEM sing 222 n n CBA CGA HEM sing 223 n n CBA HBA HEM sing 224 n n CBA HBAA HEM sing 225 n n CGA O1A HEM doub 226 n n CGA O2A HEM sing 227 n n C1B C2B HEM sing 228 n n C1B NB HEM sing 229 n n C2B C3B HEM doub 230 n n C2B CMB HEM sing 231 n n C3B C4B HEM sing 232 n n C3B CAB HEM sing 233 n n C4B NB HEM doub 234 n n CMB HMB HEM sing 235 n n CMB HMBA HEM sing 236 n n CMB HMBB HEM sing 237 n n CAB CBB HEM doub 238 n n CAB HAB HEM sing 239 n n CBB HBB HEM sing 240 n n CBB HBBA HEM sing 241 n n C1C C2C HEM sing 242 n y C1C NC HEM sing 243 n y C2C C3C HEM doub 244 n y C2C CMC HEM sing 245 n n C3C C4C HEM sing 246 n y C3C CAC HEM sing 247 n n C4C NC HEM sing 248 n y CMC HMC HEM sing 249 n n CMC HMCA HEM sing 250 n n CMC HMCB HEM sing 251 n n CAC CBC HEM doub 252 n n CAC HAC HEM sing 253 n n CBC HBC HEM sing 254 n n CBC HBCA HEM sing 255 n n C1D C2D HEM sing 256 n n C1D ND HEM doub 257 n n C2D C3D HEM doub 258 n n C2D CMD HEM sing 259 n n C3D C4D HEM sing 260 n n C3D CAD HEM sing 261 n n C4D ND HEM sing 262 n n CMD HMD HEM sing 263 n n CMD HMDA HEM sing 264 n n CMD HMDB HEM sing 265 n n CAD CBD HEM sing 266 n n CAD HAD HEM sing 267 n n CAD HADA HEM sing 268 n n CBD CGD HEM sing 269 n n CBD HBD HEM sing 270 n n CBD HBDA HEM sing 271 n n CGD O1D HEM doub 272 n n CGD O2D HEM sing 273 n n O2A H2A HEM sing 274 n n O2D H2D HEM sing 275 n n FE NA HEM sing 276 n n FE NB HEM sing 277 n n FE NC HEM sing 278 n n FE ND HEM sing 279 n n # _atom_sites.entry_id 6DPQ _atom_sites.fract_transf_matrix[1][1] 0.011682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 2 HEM HEM . D 3 GOL A 1 502 3 GOL GOL . E 3 GOL A 1 503 4 GOL GOL . F 3 GOL A 1 504 6 GOL GOL . G 4 H7P B 1 501 1 H7P BMS . H 3 GOL B 1 502 1 GOL GOL . I 3 GOL B 1 503 2 GOL GOL . J 3 GOL B 1 504 5 GOL GOL . K 5 HOH A 1 601 40 HOH HOH . K 5 HOH A 2 602 104 HOH HOH . K 5 HOH A 3 603 113 HOH HOH . K 5 HOH A 4 604 60 HOH HOH . K 5 HOH A 5 605 37 HOH HOH . K 5 HOH A 6 606 117 HOH HOH . K 5 HOH A 7 607 116 HOH HOH . K 5 HOH A 8 608 59 HOH HOH . K 5 HOH A 9 609 126 HOH HOH . K 5 HOH A 10 610 144 HOH HOH . K 5 HOH A 11 611 142 HOH HOH . K 5 HOH A 12 612 143 HOH HOH . K 5 HOH A 13 613 22 HOH HOH . K 5 HOH A 14 614 32 HOH HOH . K 5 HOH A 15 615 35 HOH HOH . K 5 HOH A 16 616 137 HOH HOH . K 5 HOH A 17 617 77 HOH HOH . K 5 HOH A 18 618 93 HOH HOH . K 5 HOH A 19 619 27 HOH HOH . K 5 HOH A 20 620 24 HOH HOH . K 5 HOH A 21 621 139 HOH HOH . K 5 HOH A 22 622 23 HOH HOH . K 5 HOH A 23 623 138 HOH HOH . K 5 HOH A 24 624 115 HOH HOH . K 5 HOH A 25 625 114 HOH HOH . K 5 HOH A 26 626 46 HOH HOH . K 5 HOH A 27 627 89 HOH HOH . K 5 HOH A 28 628 45 HOH HOH . K 5 HOH A 29 629 51 HOH HOH . K 5 HOH A 30 630 62 HOH HOH . K 5 HOH A 31 631 63 HOH HOH . K 5 HOH A 32 632 31 HOH HOH . K 5 HOH A 33 633 111 HOH HOH . K 5 HOH A 34 634 140 HOH HOH . K 5 HOH A 35 635 61 HOH HOH . K 5 HOH A 36 636 38 HOH HOH . K 5 HOH A 37 637 90 HOH HOH . K 5 HOH A 38 638 102 HOH HOH . K 5 HOH A 39 639 57 HOH HOH . K 5 HOH A 40 640 28 HOH HOH . K 5 HOH A 41 641 36 HOH HOH . K 5 HOH A 42 642 91 HOH HOH . K 5 HOH A 43 643 53 HOH HOH . K 5 HOH A 44 644 67 HOH HOH . K 5 HOH A 45 645 30 HOH HOH . K 5 HOH A 46 646 25 HOH HOH . K 5 HOH A 47 647 145 HOH HOH . K 5 HOH A 48 648 71 HOH HOH . K 5 HOH A 49 649 141 HOH HOH . K 5 HOH A 50 650 64 HOH HOH . K 5 HOH A 51 651 50 HOH HOH . K 5 HOH A 52 652 52 HOH HOH . L 5 HOH B 1 601 149 HOH HOH . L 5 HOH B 2 602 118 HOH HOH . L 5 HOH B 3 603 127 HOH HOH . L 5 HOH B 4 604 147 HOH HOH . L 5 HOH B 5 605 68 HOH HOH . L 5 HOH B 6 606 72 HOH HOH . L 5 HOH B 7 607 136 HOH HOH . L 5 HOH B 8 608 121 HOH HOH . L 5 HOH B 9 609 18 HOH HOH . L 5 HOH B 10 610 3 HOH HOH . L 5 HOH B 11 611 94 HOH HOH . L 5 HOH B 12 612 83 HOH HOH . L 5 HOH B 13 613 49 HOH HOH . L 5 HOH B 14 614 122 HOH HOH . L 5 HOH B 15 615 125 HOH HOH . L 5 HOH B 16 616 119 HOH HOH . L 5 HOH B 17 617 21 HOH HOH . L 5 HOH B 18 618 73 HOH HOH . L 5 HOH B 19 619 98 HOH HOH . L 5 HOH B 20 620 5 HOH HOH . L 5 HOH B 21 621 101 HOH HOH . L 5 HOH B 22 622 123 HOH HOH . L 5 HOH B 23 623 85 HOH HOH . L 5 HOH B 24 624 128 HOH HOH . L 5 HOH B 25 625 148 HOH HOH . L 5 HOH B 26 626 131 HOH HOH . L 5 HOH B 27 627 120 HOH HOH . L 5 HOH B 28 628 41 HOH HOH . L 5 HOH B 29 629 26 HOH HOH . L 5 HOH B 30 630 79 HOH HOH . L 5 HOH B 31 631 12 HOH HOH . L 5 HOH B 32 632 66 HOH HOH . L 5 HOH B 33 633 69 HOH HOH . L 5 HOH B 34 634 124 HOH HOH . L 5 HOH B 35 635 10 HOH HOH . L 5 HOH B 36 636 106 HOH HOH . L 5 HOH B 37 637 44 HOH HOH . L 5 HOH B 38 638 130 HOH HOH . L 5 HOH B 39 639 103 HOH HOH . L 5 HOH B 40 640 19 HOH HOH . L 5 HOH B 41 641 92 HOH HOH . L 5 HOH B 42 642 42 HOH HOH . L 5 HOH B 43 643 11 HOH HOH . L 5 HOH B 44 644 133 HOH HOH . L 5 HOH B 45 645 97 HOH HOH . L 5 HOH B 46 646 108 HOH HOH . L 5 HOH B 47 647 9 HOH HOH . L 5 HOH B 48 648 129 HOH HOH . L 5 HOH B 49 649 70 HOH HOH . L 5 HOH B 50 650 107 HOH HOH . L 5 HOH B 51 651 86 HOH HOH . L 5 HOH B 52 652 56 HOH HOH . L 5 HOH B 53 653 20 HOH HOH . L 5 HOH B 54 654 109 HOH HOH . L 5 HOH B 55 655 81 HOH HOH . L 5 HOH B 56 656 1 HOH HOH . L 5 HOH B 57 657 14 HOH HOH . L 5 HOH B 58 658 48 HOH HOH . L 5 HOH B 59 659 105 HOH HOH . L 5 HOH B 60 660 95 HOH HOH . L 5 HOH B 61 661 134 HOH HOH . L 5 HOH B 62 662 87 HOH HOH . L 5 HOH B 63 663 146 HOH HOH . L 5 HOH B 64 664 110 HOH HOH . L 5 HOH B 65 665 99 HOH HOH . L 5 HOH B 66 666 132 HOH HOH . L 5 HOH B 67 667 96 HOH HOH . L 5 HOH B 68 668 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 65.528 51.326 21.159 1 105.9 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . C 2 63.707 55.723 22.049 1 103.14 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . C 2 62.569 56.192 17.325 1 100.76 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . C 2 64.67 51.926 16.43 1 96.89 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . C 2 65.072 52.46 21.788 1 102.08 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . C 2 65.098 52.653 23.182 1 105.31 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . C 2 64.588 53.885 23.439 1 100.64 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . C 2 64.276 54.478 22.202 1 99.72 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . C 2 64.403 54.523 24.792 1 100.37 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . C 2 65.57 51.643 24.194 1 108.46 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . C 2 64.565 50.489 24.259 1 110.8 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . C 2 63.348 50.921 25.035 1 118.78 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . C 2 62.205 50.791 24.539 1 119.09 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . C 2 63.479 51.411 26.178 1 122.3 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . C 2 63.249 56.193 20.813 1 105.4 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . C 2 62.619 57.459 20.698 1 108.78 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . C 2 62.294 57.625 19.384 1 105.3 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . C 2 62.742 56.39 18.696 1 100.64 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . C 2 62.389 58.435 21.826 1 110.56 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . C 2 61.604 58.767 18.752 1 104.25 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . C 2 61.15 59.791 19.471 1 100.52 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . C 2 63.031 55.062 16.664 1 102.41 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . C 2 62.801 54.751 15.312 1 99.15 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . C 2 63.422 53.534 15.059 1 96.8 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . C 2 64.004 53.108 16.28 1 96.65 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . C 2 62.055 55.615 14.327 1 97.06 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . C 2 63.421 52.732 13.818 1 90.38 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . C 2 62.506 52.924 12.874 1 92.04 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . C 2 65.06 51.448 17.674 1 95.92 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . C 2 65.729 50.15 17.801 1 93.05 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . C 2 65.986 49.984 19.104 1 93.72 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . C 2 65.447 51.173 19.782 1 103.03 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . C 2 66.082 49.191 16.693 1 94.82 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . C 2 66.668 48.788 19.721 1 94.52 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . C 2 68.15 49.092 19.981 1 98.96 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . C 2 68.993 48.878 18.743 1 97.79 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . C 2 69.844 49.734 18.408 1 83.27 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . C 2 68.889 47.821 18.08 1 99.63 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . C 2 64.538 53.581 21.202 1 97.64 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . C 2 63.298 55.584 19.617 1 101 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . C 2 63.721 54.034 17.245 1 98.79 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . C 2 64.904 52.014 18.881 1 101.6 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . C 2 64.14 53.683 19.261 1 95.31 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #