data_6DPR
#
_model_server_result.job_id            FFQsvnJjQARo6X0MZvIV9g 
_model_server_result.datetime_utc      '2024-11-01 15:35:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dpr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6DPR 
#
_exptl.entry_id    6DPR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DPR 
_cell.length_a            85.534 
_cell.length_b            97.234 
_cell.length_c            128.289 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DPR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,L 1 1 
B,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 297 A CYS 308 1_555 B SG CYS 297 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc1 A NE2 HIS 335 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 194 n n 
CHA C4D HEM doub 195 n n 
CHA HHA HEM sing 196 n n 
CHB C4A HEM sing 197 n n 
CHB C1B HEM doub 198 n n 
CHB HHB HEM sing 199 n n 
CHC C4B HEM sing 200 n n 
CHC C1C HEM doub 201 n n 
CHC HHC HEM sing 202 n n 
CHD C4C HEM doub 203 n n 
CHD C1D HEM sing 204 n n 
CHD HHD HEM sing 205 n n 
C1A C2A HEM doub 206 n y 
C1A NA HEM sing 207 n y 
C2A C3A HEM sing 208 n y 
C2A CAA HEM sing 209 n n 
C3A C4A HEM doub 210 n y 
C3A CMA HEM sing 211 n n 
C4A NA HEM sing 212 n y 
CMA HMA HEM sing 213 n n 
CMA HMAA HEM sing 214 n n 
CMA HMAB HEM sing 215 n n 
CAA CBA HEM sing 216 n n 
CAA HAA HEM sing 217 n n 
CAA HAAA HEM sing 218 n n 
CBA CGA HEM sing 219 n n 
CBA HBA HEM sing 220 n n 
CBA HBAA HEM sing 221 n n 
CGA O1A HEM doub 222 n n 
CGA O2A HEM sing 223 n n 
C1B C2B HEM sing 224 n n 
C1B NB HEM sing 225 n n 
C2B C3B HEM doub 226 n n 
C2B CMB HEM sing 227 n n 
C3B C4B HEM sing 228 n n 
C3B CAB HEM sing 229 n n 
C4B NB HEM doub 230 n n 
CMB HMB HEM sing 231 n n 
CMB HMBA HEM sing 232 n n 
CMB HMBB HEM sing 233 n n 
CAB CBB HEM doub 234 n n 
CAB HAB HEM sing 235 n n 
CBB HBB HEM sing 236 n n 
CBB HBBA HEM sing 237 n n 
C1C C2C HEM sing 238 n y 
C1C NC HEM sing 239 n y 
C2C C3C HEM doub 240 n y 
C2C CMC HEM sing 241 n n 
C3C C4C HEM sing 242 n y 
C3C CAC HEM sing 243 n n 
C4C NC HEM sing 244 n y 
CMC HMC HEM sing 245 n n 
CMC HMCA HEM sing 246 n n 
CMC HMCB HEM sing 247 n n 
CAC CBC HEM doub 248 n n 
CAC HAC HEM sing 249 n n 
CBC HBC HEM sing 250 n n 
CBC HBCA HEM sing 251 n n 
C1D C2D HEM sing 252 n n 
C1D ND HEM doub 253 n n 
C2D C3D HEM doub 254 n n 
C2D CMD HEM sing 255 n n 
C3D C4D HEM sing 256 n n 
C3D CAD HEM sing 257 n n 
C4D ND HEM sing 258 n n 
CMD HMD HEM sing 259 n n 
CMD HMDA HEM sing 260 n n 
CMD HMDB HEM sing 261 n n 
CAD CBD HEM sing 262 n n 
CAD HAD HEM sing 263 n n 
CAD HADA HEM sing 264 n n 
CBD CGD HEM sing 265 n n 
CBD HBD HEM sing 266 n n 
CBD HBDA HEM sing 267 n n 
CGD O1D HEM doub 268 n n 
CGD O2D HEM sing 269 n n 
O2A H2A HEM sing 270 n n 
O2D H2D HEM sing 271 n n 
FE NA HEM sing 272 n n 
FE NB HEM sing 273 n n 
FE NC HEM sing 274 n n 
FE ND HEM sing 275 n n 
#
_atom_sites.entry_id                     6DPR 
_atom_sites.fract_transf_matrix[1][1]    0.011691 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010284 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007795 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 1 HEM HEM . 
D 3 H7P A 1 502 1 H7P BMS . 
E 4 EDO A 1 503 1 EDO EDO . 
F 4 EDO A 1 504 2 EDO EDO . 
G 4 EDO A 1 505 4 EDO EDO . 
H 4 EDO A 1 506 5 EDO EDO . 
I 4 EDO A 1 507 6 EDO EDO . 
J 3 H7P B 1 501 2 H7P BMS . 
K 4 EDO B 1 502 3 EDO EDO . 
L 5 HOH A 1 601 69 HOH HOH . 
L 5 HOH A 2 602 55 HOH HOH . 
L 5 HOH A 3 603 65 HOH HOH . 
L 5 HOH A 4 604 71 HOH HOH . 
L 5 HOH A 5 605 68 HOH HOH . 
L 5 HOH A 6 606 81 HOH HOH . 
L 5 HOH A 7 607 84 HOH HOH . 
L 5 HOH A 8 608 16 HOH HOH . 
L 5 HOH A 9 609 26 HOH HOH . 
L 5 HOH A 10 610 80 HOH HOH . 
L 5 HOH A 11 611 17 HOH HOH . 
L 5 HOH A 12 612 12 HOH HOH . 
L 5 HOH A 13 613 59 HOH HOH . 
L 5 HOH A 14 614 9 HOH HOH . 
L 5 HOH A 15 615 82 HOH HOH . 
L 5 HOH A 16 616 31 HOH HOH . 
L 5 HOH A 17 617 76 HOH HOH . 
L 5 HOH A 18 618 67 HOH HOH . 
L 5 HOH A 19 619 48 HOH HOH . 
L 5 HOH A 20 620 66 HOH HOH . 
L 5 HOH A 21 621 13 HOH HOH . 
L 5 HOH A 22 622 85 HOH HOH . 
L 5 HOH A 23 623 33 HOH HOH . 
L 5 HOH A 24 624 1 HOH HOH . 
L 5 HOH A 25 625 8 HOH HOH . 
L 5 HOH A 26 626 64 HOH HOH . 
L 5 HOH A 27 627 37 HOH HOH . 
L 5 HOH A 28 628 83 HOH HOH . 
L 5 HOH A 29 629 23 HOH HOH . 
L 5 HOH A 30 630 32 HOH HOH . 
L 5 HOH A 31 631 38 HOH HOH . 
L 5 HOH A 32 632 54 HOH HOH . 
L 5 HOH A 33 633 53 HOH HOH . 
L 5 HOH A 34 634 24 HOH HOH . 
L 5 HOH A 35 635 49 HOH HOH . 
L 5 HOH A 36 636 19 HOH HOH . 
L 5 HOH A 37 637 21 HOH HOH . 
L 5 HOH A 38 638 70 HOH HOH . 
M 5 HOH B 1 601 79 HOH HOH . 
M 5 HOH B 2 602 73 HOH HOH . 
M 5 HOH B 3 603 77 HOH HOH . 
M 5 HOH B 4 604 43 HOH HOH . 
M 5 HOH B 5 605 60 HOH HOH . 
M 5 HOH B 6 606 75 HOH HOH . 
M 5 HOH B 7 607 72 HOH HOH . 
M 5 HOH B 8 608 42 HOH HOH . 
M 5 HOH B 9 609 14 HOH HOH . 
M 5 HOH B 10 610 34 HOH HOH . 
M 5 HOH B 11 611 74 HOH HOH . 
M 5 HOH B 12 612 78 HOH HOH . 
M 5 HOH B 13 613 3 HOH HOH . 
M 5 HOH B 14 614 2 HOH HOH . 
M 5 HOH B 15 615 15 HOH HOH . 
M 5 HOH B 16 616 39 HOH HOH . 
M 5 HOH B 17 617 44 HOH HOH . 
M 5 HOH B 18 618 25 HOH HOH . 
M 5 HOH B 19 619 51 HOH HOH . 
M 5 HOH B 20 620 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 105.603 -3.071 149.097 1 84.5 ? CHA HEM 501 A 1 
HETATM 2 C CHB HEM . . . C 2 107.402 -7.527 149.713 1 72.37 ? CHB HEM 501 A 1 
HETATM 3 C CHC HEM . . . C 2 108.706 -7.617 145.011 1 89.79 ? CHC HEM 501 A 1 
HETATM 4 C CHD HEM . . . C 2 106.319 -3.481 144.322 1 90.8 ? CHD HEM 501 A 1 
HETATM 5 C C1A HEM . . . C 2 106.036 -4.251 149.654 1 76.15 ? C1A HEM 501 A 1 
HETATM 6 C C2A HEM . . . C 2 105.854 -4.588 151.005 1 75.57 ? C2A HEM 501 A 1 
HETATM 7 C C3A HEM . . . C 2 106.349 -5.838 151.183 1 71.27 ? C3A HEM 501 A 1 
HETATM 8 C C4A HEM . . . C 2 106.832 -6.293 149.943 1 70.02 ? C4A HEM 501 A 1 
HETATM 9 C CMA HEM . . . C 2 106.372 -6.606 152.475 1 77.45 ? CMA HEM 501 A 1 
HETATM 10 C CAA HEM . . . C 2 105.26 -3.697 152.068 1 79.31 ? CAA HEM 501 A 1 
HETATM 11 C CBA HEM . . . C 2 106.289 -2.652 152.517 1 79.87 ? CBA HEM 501 A 1 
HETATM 12 C CGA HEM . . . C 2 107.637 -3.294 152.737 1 85.39 ? CGA HEM 501 A 1 
HETATM 13 O O1A HEM . . . C 2 108.377 -3.561 151.762 1 84.24 ? O1A HEM 501 A 1 
HETATM 14 O O2A HEM . . . C 2 108.027 -3.55 153.898 1 80.97 ? O2A HEM 501 A 1 
HETATM 15 C C1B HEM . . . C 2 107.908 -7.902 148.463 1 78.06 ? C1B HEM 501 A 1 
HETATM 16 C C2B HEM . . . C 2 108.575 -9.141 148.263 1 84.46 ? C2B HEM 501 A 1 
HETATM 17 C C3B HEM . . . C 2 108.961 -9.188 146.953 1 89.49 ? C3B HEM 501 A 1 
HETATM 18 C C4B HEM . . . C 2 108.502 -7.916 146.357 1 84.75 ? C4B HEM 501 A 1 
HETATM 19 C CMB HEM . . . C 2 108.792 -10.199 149.315 1 85.94 ? CMB HEM 501 A 1 
HETATM 20 C CAB HEM . . . C 2 109.711 -10.239 146.23 1 96.48 ? CAB HEM 501 A 1 
HETATM 21 C CBB HEM . . . C 2 110.21 -11.305 146.853 1 100.62 ? CBB HEM 501 A 1 
HETATM 22 C C1C HEM . . . C 2 108.169 -6.493 144.405 1 87.28 ? C1C HEM 501 A 1 
HETATM 23 C C2C HEM . . . C 2 108.411 -6.078 143.084 1 81.58 ? C2C HEM 501 A 1 
HETATM 24 C C3C HEM . . . C 2 107.716 -4.894 142.896 1 78.18 ? C3C HEM 501 A 1 
HETATM 25 C C4C HEM . . . C 2 107.06 -4.607 144.116 1 84.81 ? C4C HEM 501 A 1 
HETATM 26 C CMC HEM . . . C 2 109.251 -6.809 142.069 1 82.65 ? CMC HEM 501 A 1 
HETATM 27 C CAC HEM . . . C 2 107.629 -4.044 141.694 1 77.91 ? CAC HEM 501 A 1 
HETATM 28 C CBC HEM . . . C 2 108.312 -4.319 140.592 1 85.2 ? CBC HEM 501 A 1 
HETATM 29 C C1D HEM . . . C 2 105.951 -3.066 145.595 1 90.4 ? C1D HEM 501 A 1 
HETATM 30 C C2D HEM . . . C 2 105.249 -1.795 145.78 1 81.53 ? C2D HEM 501 A 1 
HETATM 31 C C3D HEM . . . C 2 105.028 -1.676 147.095 1 77.89 ? C3D HEM 501 A 1 
HETATM 32 C C4D HEM . . . C 2 105.635 -2.863 147.724 1 88.38 ? C4D HEM 501 A 1 
HETATM 33 C CMD HEM . . . C 2 104.846 -0.819 144.705 1 87.83 ? CMD HEM 501 A 1 
HETATM 34 C CAD HEM . . . C 2 104.304 -0.53 147.753 1 76.52 ? CAD HEM 501 A 1 
HETATM 35 C CBD HEM . . . C 2 102.86 -0.935 148.081 1 78.63 ? CBD HEM 501 A 1 
HETATM 36 C CGD HEM . . . C 2 101.971 -0.949 146.856 1 82.41 ? CGD HEM 501 A 1 
HETATM 37 O O1D HEM . . . C 2 102.107 -0.086 145.956 1 82.29 ? O1D HEM 501 A 1 
HETATM 38 O O2D HEM . . . C 2 101.035 -1.784 146.776 1 73.73 ? O2D HEM 501 A 1 
HETATM 39 N NA HEM . . . C 2 106.641 -5.306 149.018 1 73.39 ? NA HEM 501 A 1 
HETATM 40 N NB HEM . . . C 2 107.892 -7.206 147.319 1 80.32 ? NB HEM 501 A 1 
HETATM 41 N NC HEM . . . C 2 107.384 -5.569 145.032 1 84.87 ? NC HEM 501 A 1 
HETATM 42 N ND HEM . . . C 2 106.167 -3.663 146.779 1 91.28 ? ND HEM 501 A 1 
HETATM 43 FE FE HEM . . . C 2 106.998 -5.319 147.072 1 77.61 ? FE HEM 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           43 
#