data_6DPR
#
_model_server_result.job_id            JvRhukTQFEJTe1fOhPkSRA 
_model_server_result.datetime_utc      '2024-11-01 15:33:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dpr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":507}' 
#
_entry.id    6DPR 
#
_exptl.entry_id    6DPR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DPR 
_cell.length_a            85.534 
_cell.length_b            97.234 
_cell.length_c            128.289 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DPR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,L 1 1 
B,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 297 A CYS 308 1_555 B SG CYS 297 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc1 A NE2 HIS 335 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6DPR 
_atom_sites.fract_transf_matrix[1][1]    0.011691 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010284 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007795 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 1 HEM HEM . 
D 3 H7P A 1 502 1 H7P BMS . 
E 4 EDO A 1 503 1 EDO EDO . 
F 4 EDO A 1 504 2 EDO EDO . 
G 4 EDO A 1 505 4 EDO EDO . 
H 4 EDO A 1 506 5 EDO EDO . 
I 4 EDO A 1 507 6 EDO EDO . 
J 3 H7P B 1 501 2 H7P BMS . 
K 4 EDO B 1 502 3 EDO EDO . 
L 5 HOH A 1 601 69 HOH HOH . 
L 5 HOH A 2 602 55 HOH HOH . 
L 5 HOH A 3 603 65 HOH HOH . 
L 5 HOH A 4 604 71 HOH HOH . 
L 5 HOH A 5 605 68 HOH HOH . 
L 5 HOH A 6 606 81 HOH HOH . 
L 5 HOH A 7 607 84 HOH HOH . 
L 5 HOH A 8 608 16 HOH HOH . 
L 5 HOH A 9 609 26 HOH HOH . 
L 5 HOH A 10 610 80 HOH HOH . 
L 5 HOH A 11 611 17 HOH HOH . 
L 5 HOH A 12 612 12 HOH HOH . 
L 5 HOH A 13 613 59 HOH HOH . 
L 5 HOH A 14 614 9 HOH HOH . 
L 5 HOH A 15 615 82 HOH HOH . 
L 5 HOH A 16 616 31 HOH HOH . 
L 5 HOH A 17 617 76 HOH HOH . 
L 5 HOH A 18 618 67 HOH HOH . 
L 5 HOH A 19 619 48 HOH HOH . 
L 5 HOH A 20 620 66 HOH HOH . 
L 5 HOH A 21 621 13 HOH HOH . 
L 5 HOH A 22 622 85 HOH HOH . 
L 5 HOH A 23 623 33 HOH HOH . 
L 5 HOH A 24 624 1 HOH HOH . 
L 5 HOH A 25 625 8 HOH HOH . 
L 5 HOH A 26 626 64 HOH HOH . 
L 5 HOH A 27 627 37 HOH HOH . 
L 5 HOH A 28 628 83 HOH HOH . 
L 5 HOH A 29 629 23 HOH HOH . 
L 5 HOH A 30 630 32 HOH HOH . 
L 5 HOH A 31 631 38 HOH HOH . 
L 5 HOH A 32 632 54 HOH HOH . 
L 5 HOH A 33 633 53 HOH HOH . 
L 5 HOH A 34 634 24 HOH HOH . 
L 5 HOH A 35 635 49 HOH HOH . 
L 5 HOH A 36 636 19 HOH HOH . 
L 5 HOH A 37 637 21 HOH HOH . 
L 5 HOH A 38 638 70 HOH HOH . 
M 5 HOH B 1 601 79 HOH HOH . 
M 5 HOH B 2 602 73 HOH HOH . 
M 5 HOH B 3 603 77 HOH HOH . 
M 5 HOH B 4 604 43 HOH HOH . 
M 5 HOH B 5 605 60 HOH HOH . 
M 5 HOH B 6 606 75 HOH HOH . 
M 5 HOH B 7 607 72 HOH HOH . 
M 5 HOH B 8 608 42 HOH HOH . 
M 5 HOH B 9 609 14 HOH HOH . 
M 5 HOH B 10 610 34 HOH HOH . 
M 5 HOH B 11 611 74 HOH HOH . 
M 5 HOH B 12 612 78 HOH HOH . 
M 5 HOH B 13 613 3 HOH HOH . 
M 5 HOH B 14 614 2 HOH HOH . 
M 5 HOH B 15 615 15 HOH HOH . 
M 5 HOH B 16 616 39 HOH HOH . 
M 5 HOH B 17 617 44 HOH HOH . 
M 5 HOH B 18 618 25 HOH HOH . 
M 5 HOH B 19 619 51 HOH HOH . 
M 5 HOH B 20 620 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 4 77.939 4.181 134.629 1 88.3 ? C1 EDO 507 A 1 
HETATM 2 O O1 EDO . . . I 4 78.168 2.989 133.869 1 87.31 ? O1 EDO 507 A 1 
HETATM 3 C C2 EDO . . . I 4 79.206 4.544 135.396 1 89.73 ? C2 EDO 507 A 1 
HETATM 4 O O2 EDO . . . I 4 79.224 5.946 135.685 1 88.47 ? O2 EDO 507 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#