data_6DQ5
#
_model_server_result.job_id            h0h9ujfl1z-mSTl7qEH4pg 
_model_server_result.datetime_utc      '2024-11-18 08:44:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dq5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    6DQ5 
#
_exptl.entry_id    6DQ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              396.443 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[6-(4-acryloyl-1,4-diazepan-1-yl)-2-(pyridin-2-yl)pyrimidin-4-yl]-beta-alanine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.13 
_cell.angle_gamma         90 
_cell.entry_id            6DQ5 
_cell.length_a            116.749 
_cell.length_b            62.134 
_cell.length_c            46.601 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DQ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc3 B N28 H6G . A H6G 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc4 B N29 H6G . A H6G 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc5 C MN MN . A MN 602 1_555 D O HOH . A HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc6 C MN MN . A MN 602 1_555 D O HOH . A HOH 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
#
_chem_comp.formula           'C20 H24 N6 O3' 
_chem_comp.formula_weight    396.443 
_chem_comp.id                H6G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[6-(4-acryloyl-1,4-diazepan-1-yl)-2-(pyridin-2-yl)pyrimidin-4-yl]-beta-alanine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C26 C27 H6G doub 129 n y 
C26 C25 H6G sing 130 n y 
C27 N28 H6G sing 131 n y 
C25 C24 H6G doub 132 n y 
N28 C23 H6G doub 133 n y 
C24 C23 H6G sing 134 n y 
C23 C22 H6G sing 135 n n 
C17 C16 H6G doub 136 n n 
C22 N29 H6G doub 137 n y 
C22 N21 H6G sing 138 n y 
C16 C15 H6G sing 139 n n 
N29 C07 H6G sing 140 n y 
N21 C09 H6G doub 141 n y 
C19 C20 H6G sing 142 n n 
C19 N14 H6G sing 143 n n 
C07 N06 H6G sing 144 n n 
C07 C08 H6G doub 145 n y 
C15 N14 H6G sing 146 n n 
C15 O18 H6G doub 147 n n 
C09 C08 H6G sing 148 n y 
C09 N10 H6G sing 149 n n 
C20 N10 H6G sing 150 n n 
N06 C05 H6G sing 151 n n 
N14 C13 H6G sing 152 n n 
N10 C11 H6G sing 153 n n 
C05 C04 H6G sing 154 n n 
C13 C12 H6G sing 155 n n 
C11 C12 H6G sing 156 n n 
C04 C02 H6G sing 157 n n 
C02 O01 H6G doub 158 n n 
C02 O03 H6G sing 159 n n 
C13 H1 H6G sing 160 n n 
C13 H2 H6G sing 161 n n 
C17 H3 H6G sing 162 n n 
C17 H4 H6G sing 163 n n 
C20 H5 H6G sing 164 n n 
C20 H6 H6G sing 165 n n 
C24 H7 H6G sing 166 n n 
C26 H8 H6G sing 167 n n 
C04 H9 H6G sing 168 n n 
C04 H10 H6G sing 169 n n 
C05 H11 H6G sing 170 n n 
C05 H12 H6G sing 171 n n 
C08 H13 H6G sing 172 n n 
C11 H14 H6G sing 173 n n 
C11 H15 H6G sing 174 n n 
C12 H16 H6G sing 175 n n 
C12 H17 H6G sing 176 n n 
C16 H18 H6G sing 177 n n 
C19 H19 H6G sing 178 n n 
C19 H20 H6G sing 179 n n 
C25 H21 H6G sing 180 n n 
C27 H22 H6G sing 181 n n 
N06 H23 H6G sing 182 n n 
O03 H24 H6G sing 183 n n 
#
_atom_sites.entry_id                     6DQ5 
_atom_sites.fract_transf_matrix[1][1]    0.008565 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000319 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016094 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021474 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 H6G A 1 601 1 H6G LIG . 
C 3 MN A 1 602 1 MN MN . 
D 4 HOH A 1 701 103 HOH HOH . 
D 4 HOH A 2 702 80 HOH HOH . 
D 4 HOH A 3 703 49 HOH HOH . 
D 4 HOH A 4 704 7 HOH HOH . 
D 4 HOH A 5 705 22 HOH HOH . 
D 4 HOH A 6 706 10 HOH HOH . 
D 4 HOH A 7 707 69 HOH HOH . 
D 4 HOH A 8 708 52 HOH HOH . 
D 4 HOH A 9 709 111 HOH HOH . 
D 4 HOH A 10 710 21 HOH HOH . 
D 4 HOH A 11 711 25 HOH HOH . 
D 4 HOH A 12 712 35 HOH HOH . 
D 4 HOH A 13 713 110 HOH HOH . 
D 4 HOH A 14 714 53 HOH HOH . 
D 4 HOH A 15 715 93 HOH HOH . 
D 4 HOH A 16 716 16 HOH HOH . 
D 4 HOH A 17 717 48 HOH HOH . 
D 4 HOH A 18 718 2 HOH HOH . 
D 4 HOH A 19 719 38 HOH HOH . 
D 4 HOH A 20 720 18 HOH HOH . 
D 4 HOH A 21 721 20 HOH HOH . 
D 4 HOH A 22 722 89 HOH HOH . 
D 4 HOH A 23 723 27 HOH HOH . 
D 4 HOH A 24 724 57 HOH HOH . 
D 4 HOH A 25 725 99 HOH HOH . 
D 4 HOH A 26 726 15 HOH HOH . 
D 4 HOH A 27 727 33 HOH HOH . 
D 4 HOH A 28 728 41 HOH HOH . 
D 4 HOH A 29 729 9 HOH HOH . 
D 4 HOH A 30 730 105 HOH HOH . 
D 4 HOH A 31 731 75 HOH HOH . 
D 4 HOH A 32 732 26 HOH HOH . 
D 4 HOH A 33 733 8 HOH HOH . 
D 4 HOH A 34 734 98 HOH HOH . 
D 4 HOH A 35 735 14 HOH HOH . 
D 4 HOH A 36 736 46 HOH HOH . 
D 4 HOH A 37 737 4 HOH HOH . 
D 4 HOH A 38 738 117 HOH HOH . 
D 4 HOH A 39 739 31 HOH HOH . 
D 4 HOH A 40 740 30 HOH HOH . 
D 4 HOH A 41 741 23 HOH HOH . 
D 4 HOH A 42 742 3 HOH HOH . 
D 4 HOH A 43 743 39 HOH HOH . 
D 4 HOH A 44 744 32 HOH HOH . 
D 4 HOH A 45 745 12 HOH HOH . 
D 4 HOH A 46 746 104 HOH HOH . 
D 4 HOH A 47 747 63 HOH HOH . 
D 4 HOH A 48 748 70 HOH HOH . 
D 4 HOH A 49 749 24 HOH HOH . 
D 4 HOH A 50 750 6 HOH HOH . 
D 4 HOH A 51 751 107 HOH HOH . 
D 4 HOH A 52 752 29 HOH HOH . 
D 4 HOH A 53 753 114 HOH HOH . 
D 4 HOH A 54 754 40 HOH HOH . 
D 4 HOH A 55 755 36 HOH HOH . 
D 4 HOH A 56 756 61 HOH HOH . 
D 4 HOH A 57 757 1 HOH HOH . 
D 4 HOH A 58 758 77 HOH HOH . 
D 4 HOH A 59 759 5 HOH HOH . 
D 4 HOH A 60 760 118 HOH HOH . 
D 4 HOH A 61 761 37 HOH HOH . 
D 4 HOH A 62 762 17 HOH HOH . 
D 4 HOH A 63 763 112 HOH HOH . 
D 4 HOH A 64 764 28 HOH HOH . 
D 4 HOH A 65 765 62 HOH HOH . 
D 4 HOH A 66 766 67 HOH HOH . 
D 4 HOH A 67 767 97 HOH HOH . 
D 4 HOH A 68 768 109 HOH HOH . 
D 4 HOH A 69 769 59 HOH HOH . 
D 4 HOH A 70 770 116 HOH HOH . 
D 4 HOH A 71 771 56 HOH HOH . 
D 4 HOH A 72 772 102 HOH HOH . 
D 4 HOH A 73 773 13 HOH HOH . 
D 4 HOH A 74 774 44 HOH HOH . 
D 4 HOH A 75 775 11 HOH HOH . 
D 4 HOH A 76 776 100 HOH HOH . 
D 4 HOH A 77 777 42 HOH HOH . 
D 4 HOH A 78 778 86 HOH HOH . 
D 4 HOH A 79 779 108 HOH HOH . 
D 4 HOH A 80 780 71 HOH HOH . 
D 4 HOH A 81 781 50 HOH HOH . 
D 4 HOH A 82 782 47 HOH HOH . 
D 4 HOH A 83 783 106 HOH HOH . 
D 4 HOH A 84 784 19 HOH HOH . 
D 4 HOH A 85 785 51 HOH HOH . 
D 4 HOH A 86 786 87 HOH HOH . 
D 4 HOH A 87 787 95 HOH HOH . 
D 4 HOH A 88 788 45 HOH HOH . 
D 4 HOH A 89 789 120 HOH HOH . 
D 4 HOH A 90 790 79 HOH HOH . 
D 4 HOH A 91 791 74 HOH HOH . 
D 4 HOH A 92 792 60 HOH HOH . 
D 4 HOH A 93 793 115 HOH HOH . 
D 4 HOH A 94 794 76 HOH HOH . 
D 4 HOH A 95 795 101 HOH HOH . 
D 4 HOH A 96 796 34 HOH HOH . 
D 4 HOH A 97 797 122 HOH HOH . 
D 4 HOH A 98 798 82 HOH HOH . 
D 4 HOH A 99 799 113 HOH HOH . 
D 4 HOH A 100 800 43 HOH HOH . 
D 4 HOH A 101 801 119 HOH HOH . 
D 4 HOH A 102 802 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 H6G . . . B 2 -28.428 23.726 5.902 1 16.72 ? C13 H6G 601 A 1 
HETATM 2 C C15 H6G . . . B 2 -29.155 22.354 3.927 1 21.92 ? C15 H6G 601 A 1 
HETATM 3 C C17 H6G . . . B 2 -28.881 20.874 1.984 1 23.26 ? C17 H6G 601 A 1 
HETATM 4 C C20 H6G . . . B 2 -26.299 24.718 4.218 1 18.38 ? C20 H6G 601 A 1 
HETATM 5 C C22 H6G . . . B 2 -24.897 21.54 2.034 1 16.65 ? C22 H6G 601 A 1 
HETATM 6 C C24 H6G . . . B 2 -25.631 22.734 -0.063 1 24.07 ? C24 H6G 601 A 1 
HETATM 7 C C26 H6G . . . B 2 -25.037 21.89 -2.197 1 22.96 ? C26 H6G 601 A 1 
HETATM 8 C C02 H6G . . . B 2 -22.552 19.067 7.913 1 17.24 ? C02 H6G 601 A 1 
HETATM 9 C C04 H6G . . . B 2 -22.571 18.889 6.397 1 13.51 ? C04 H6G 601 A 1 
HETATM 10 C C05 H6G . . . B 2 -23.997 18.809 5.861 1 11.37 ? C05 H6G 601 A 1 
HETATM 11 C C07 H6G . . . B 2 -24.443 20.256 3.864 1 16.52 ? C07 H6G 601 A 1 
HETATM 12 C C08 H6G . . . B 2 -24.795 21.313 4.696 1 17.15 ? C08 H6G 601 A 1 
HETATM 13 C C09 H6G . . . B 2 -25.216 22.496 4.098 1 16.19 ? C09 H6G 601 A 1 
HETATM 14 C C11 H6G . . . B 2 -25.923 23.355 6.302 1 16.88 ? C11 H6G 601 A 1 
HETATM 15 C C12 H6G . . . B 2 -27.353 22.902 6.599 1 14.81 ? C12 H6G 601 A 1 
HETATM 16 C C16 H6G . . . B 2 -29.144 22.085 2.426 1 24.23 ? C16 H6G 601 A 1 
HETATM 17 C C19 H6G . . . B 2 -27.661 24.36 3.619 1 19.18 ? C19 H6G 601 A 1 
HETATM 18 C C23 H6G . . . B 2 -24.953 21.673 0.515 1 20.52 ? C23 H6G 601 A 1 
HETATM 19 C C25 H6G . . . B 2 -25.683 22.859 -1.444 1 23.01 ? C25 H6G 601 A 1 
HETATM 20 C C27 H6G . . . B 2 -24.376 20.852 -1.562 1 22.63 ? C27 H6G 601 A 1 
HETATM 21 N N06 H6G . . . B 2 -23.995 18.996 4.425 1 15.29 ? N06 H6G 601 A 1 
HETATM 22 N N10 H6G . . . B 2 -25.595 23.645 4.911 1 16.85 ? N10 H6G 601 A 1 
HETATM 23 N N14 H6G . . . B 2 -28.423 23.478 4.476 1 20.7 ? N14 H6G 601 A 1 
HETATM 24 N N21 H6G . . . B 2 -25.242 22.571 2.778 1 15.65 ? N21 H6G 601 A 1 
HETATM 25 N N28 H6G . . . B 2 -24.354 20.777 -0.246 1 22.26 ? N28 H6G 601 A 1 
HETATM 26 N N29 H6G . . . B 2 -24.498 20.398 2.554 1 17.91 ? N29 H6G 601 A 1 
HETATM 27 O O01 H6G . . . B 2 -23.445 19.755 8.474 1 20.86 ? O01 H6G 601 A 1 
HETATM 28 O O03 H6G . . . B 2 -21.645 18.527 8.596 1 17.38 -1 O03 H6G 601 A 1 
HETATM 29 O O18 H6G . . . B 2 -29.767 21.643 4.65 1 19.66 ? O18 H6G 601 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#