data_6DQ5 # _model_server_result.job_id CbMSOgUKO0CCy-AdbSSkHA _model_server_result.datetime_utc '2024-11-18 08:46:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6DQ5 # _exptl.entry_id 6DQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.13 _cell.angle_gamma 90 _cell.entry_id 6DQ5 _cell.length_a 116.749 _cell.length_b 62.134 _cell.length_c 46.601 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc3 B N28 H6G . A H6G 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 B N29 H6G . A H6G 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc5 C MN MN . A MN 602 1_555 D O HOH . A HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc6 C MN MN . A MN 602 1_555 D O HOH . A HOH 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DQ5 _atom_sites.fract_transf_matrix[1][1] 0.008565 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000319 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H6G A 1 601 1 H6G LIG . C 3 MN A 1 602 1 MN MN . D 4 HOH A 1 701 103 HOH HOH . D 4 HOH A 2 702 80 HOH HOH . D 4 HOH A 3 703 49 HOH HOH . D 4 HOH A 4 704 7 HOH HOH . D 4 HOH A 5 705 22 HOH HOH . D 4 HOH A 6 706 10 HOH HOH . D 4 HOH A 7 707 69 HOH HOH . D 4 HOH A 8 708 52 HOH HOH . D 4 HOH A 9 709 111 HOH HOH . D 4 HOH A 10 710 21 HOH HOH . D 4 HOH A 11 711 25 HOH HOH . D 4 HOH A 12 712 35 HOH HOH . D 4 HOH A 13 713 110 HOH HOH . D 4 HOH A 14 714 53 HOH HOH . D 4 HOH A 15 715 93 HOH HOH . D 4 HOH A 16 716 16 HOH HOH . D 4 HOH A 17 717 48 HOH HOH . D 4 HOH A 18 718 2 HOH HOH . D 4 HOH A 19 719 38 HOH HOH . D 4 HOH A 20 720 18 HOH HOH . D 4 HOH A 21 721 20 HOH HOH . D 4 HOH A 22 722 89 HOH HOH . D 4 HOH A 23 723 27 HOH HOH . D 4 HOH A 24 724 57 HOH HOH . D 4 HOH A 25 725 99 HOH HOH . D 4 HOH A 26 726 15 HOH HOH . D 4 HOH A 27 727 33 HOH HOH . D 4 HOH A 28 728 41 HOH HOH . D 4 HOH A 29 729 9 HOH HOH . D 4 HOH A 30 730 105 HOH HOH . D 4 HOH A 31 731 75 HOH HOH . D 4 HOH A 32 732 26 HOH HOH . D 4 HOH A 33 733 8 HOH HOH . D 4 HOH A 34 734 98 HOH HOH . D 4 HOH A 35 735 14 HOH HOH . D 4 HOH A 36 736 46 HOH HOH . D 4 HOH A 37 737 4 HOH HOH . D 4 HOH A 38 738 117 HOH HOH . D 4 HOH A 39 739 31 HOH HOH . D 4 HOH A 40 740 30 HOH HOH . D 4 HOH A 41 741 23 HOH HOH . D 4 HOH A 42 742 3 HOH HOH . D 4 HOH A 43 743 39 HOH HOH . D 4 HOH A 44 744 32 HOH HOH . D 4 HOH A 45 745 12 HOH HOH . D 4 HOH A 46 746 104 HOH HOH . D 4 HOH A 47 747 63 HOH HOH . D 4 HOH A 48 748 70 HOH HOH . D 4 HOH A 49 749 24 HOH HOH . D 4 HOH A 50 750 6 HOH HOH . D 4 HOH A 51 751 107 HOH HOH . D 4 HOH A 52 752 29 HOH HOH . D 4 HOH A 53 753 114 HOH HOH . D 4 HOH A 54 754 40 HOH HOH . D 4 HOH A 55 755 36 HOH HOH . D 4 HOH A 56 756 61 HOH HOH . D 4 HOH A 57 757 1 HOH HOH . D 4 HOH A 58 758 77 HOH HOH . D 4 HOH A 59 759 5 HOH HOH . D 4 HOH A 60 760 118 HOH HOH . D 4 HOH A 61 761 37 HOH HOH . D 4 HOH A 62 762 17 HOH HOH . D 4 HOH A 63 763 112 HOH HOH . D 4 HOH A 64 764 28 HOH HOH . D 4 HOH A 65 765 62 HOH HOH . D 4 HOH A 66 766 67 HOH HOH . D 4 HOH A 67 767 97 HOH HOH . D 4 HOH A 68 768 109 HOH HOH . D 4 HOH A 69 769 59 HOH HOH . D 4 HOH A 70 770 116 HOH HOH . D 4 HOH A 71 771 56 HOH HOH . D 4 HOH A 72 772 102 HOH HOH . D 4 HOH A 73 773 13 HOH HOH . D 4 HOH A 74 774 44 HOH HOH . D 4 HOH A 75 775 11 HOH HOH . D 4 HOH A 76 776 100 HOH HOH . D 4 HOH A 77 777 42 HOH HOH . D 4 HOH A 78 778 86 HOH HOH . D 4 HOH A 79 779 108 HOH HOH . D 4 HOH A 80 780 71 HOH HOH . D 4 HOH A 81 781 50 HOH HOH . D 4 HOH A 82 782 47 HOH HOH . D 4 HOH A 83 783 106 HOH HOH . D 4 HOH A 84 784 19 HOH HOH . D 4 HOH A 85 785 51 HOH HOH . D 4 HOH A 86 786 87 HOH HOH . D 4 HOH A 87 787 95 HOH HOH . D 4 HOH A 88 788 45 HOH HOH . D 4 HOH A 89 789 120 HOH HOH . D 4 HOH A 90 790 79 HOH HOH . D 4 HOH A 91 791 74 HOH HOH . D 4 HOH A 92 792 60 HOH HOH . D 4 HOH A 93 793 115 HOH HOH . D 4 HOH A 94 794 76 HOH HOH . D 4 HOH A 95 795 101 HOH HOH . D 4 HOH A 96 796 34 HOH HOH . D 4 HOH A 97 797 122 HOH HOH . D 4 HOH A 98 798 82 HOH HOH . D 4 HOH A 99 799 113 HOH HOH . D 4 HOH A 100 800 43 HOH HOH . D 4 HOH A 101 801 119 HOH HOH . D 4 HOH A 102 802 121 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -23.958 _atom_site.Cartn_y 18.803 _atom_site.Cartn_z 1.01 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #