data_6DQ6
#
_model_server_result.job_id            luFKtsEvCeHzRS_EesDnrA 
_model_server_result.datetime_utc      '2024-11-28 17:26:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dq6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    6DQ6 
#
_exptl.entry_id    6DQ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.38 
_cell.angle_gamma         90 
_cell.entry_id            6DQ6 
_cell.length_a            117.319 
_cell.length_b            62.441 
_cell.length_c            46.754 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DQ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc3 B N29 H6J . A H6J 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc4 B N30 H6J . A H6J 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc5 C MN MN . A MN 602 1_555 F O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc6 C MN MN . A MN 602 1_555 F O HOH . A HOH 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     6DQ6 
_atom_sites.fract_transf_matrix[1][1]    0.008524 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000355 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016015 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021407 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 H6J A 1 601 1 H6J LIG . 
C 3 MN A 1 602 1 MN MN . 
D 4 GOL A 1 603 501 GOL GOL . 
E 5 DMS A 1 604 601 DMS DMS . 
F 6 HOH A 1 701 303 HOH HOH . 
F 6 HOH A 2 702 288 HOH HOH . 
F 6 HOH A 3 703 179 HOH HOH . 
F 6 HOH A 4 704 161 HOH HOH . 
F 6 HOH A 5 705 140 HOH HOH . 
F 6 HOH A 6 706 80 HOH HOH . 
F 6 HOH A 7 707 305 HOH HOH . 
F 6 HOH A 8 708 174 HOH HOH . 
F 6 HOH A 9 709 81 HOH HOH . 
F 6 HOH A 10 710 28 HOH HOH . 
F 6 HOH A 11 711 3 HOH HOH . 
F 6 HOH A 12 712 189 HOH HOH . 
F 6 HOH A 13 713 75 HOH HOH . 
F 6 HOH A 14 714 109 HOH HOH . 
F 6 HOH A 15 715 299 HOH HOH . 
F 6 HOH A 16 716 297 HOH HOH . 
F 6 HOH A 17 717 99 HOH HOH . 
F 6 HOH A 18 718 168 HOH HOH . 
F 6 HOH A 19 719 214 HOH HOH . 
F 6 HOH A 20 720 227 HOH HOH . 
F 6 HOH A 21 721 309 HOH HOH . 
F 6 HOH A 22 722 222 HOH HOH . 
F 6 HOH A 23 723 101 HOH HOH . 
F 6 HOH A 24 724 197 HOH HOH . 
F 6 HOH A 25 725 43 HOH HOH . 
F 6 HOH A 26 726 304 HOH HOH . 
F 6 HOH A 27 727 232 HOH HOH . 
F 6 HOH A 28 728 16 HOH HOH . 
F 6 HOH A 29 729 60 HOH HOH . 
F 6 HOH A 30 730 67 HOH HOH . 
F 6 HOH A 31 731 123 HOH HOH . 
F 6 HOH A 32 732 24 HOH HOH . 
F 6 HOH A 33 733 154 HOH HOH . 
F 6 HOH A 34 734 125 HOH HOH . 
F 6 HOH A 35 735 196 HOH HOH . 
F 6 HOH A 36 736 33 HOH HOH . 
F 6 HOH A 37 737 26 HOH HOH . 
F 6 HOH A 38 738 77 HOH HOH . 
F 6 HOH A 39 739 298 HOH HOH . 
F 6 HOH A 40 740 21 HOH HOH . 
F 6 HOH A 41 741 104 HOH HOH . 
F 6 HOH A 42 742 27 HOH HOH . 
F 6 HOH A 43 743 83 HOH HOH . 
F 6 HOH A 44 744 55 HOH HOH . 
F 6 HOH A 45 745 264 HOH HOH . 
F 6 HOH A 46 746 7 HOH HOH . 
F 6 HOH A 47 747 12 HOH HOH . 
F 6 HOH A 48 748 1 HOH HOH . 
F 6 HOH A 49 749 50 HOH HOH . 
F 6 HOH A 50 750 36 HOH HOH . 
F 6 HOH A 51 751 17 HOH HOH . 
F 6 HOH A 52 752 211 HOH HOH . 
F 6 HOH A 53 753 97 HOH HOH . 
F 6 HOH A 54 754 2 HOH HOH . 
F 6 HOH A 55 755 188 HOH HOH . 
F 6 HOH A 56 756 10 HOH HOH . 
F 6 HOH A 57 757 61 HOH HOH . 
F 6 HOH A 58 758 19 HOH HOH . 
F 6 HOH A 59 759 219 HOH HOH . 
F 6 HOH A 60 760 9 HOH HOH . 
F 6 HOH A 61 761 4 HOH HOH . 
F 6 HOH A 62 762 68 HOH HOH . 
F 6 HOH A 63 763 103 HOH HOH . 
F 6 HOH A 64 764 71 HOH HOH . 
F 6 HOH A 65 765 143 HOH HOH . 
F 6 HOH A 66 766 22 HOH HOH . 
F 6 HOH A 67 767 31 HOH HOH . 
F 6 HOH A 68 768 38 HOH HOH . 
F 6 HOH A 69 769 132 HOH HOH . 
F 6 HOH A 70 770 113 HOH HOH . 
F 6 HOH A 71 771 91 HOH HOH . 
F 6 HOH A 72 772 63 HOH HOH . 
F 6 HOH A 73 773 49 HOH HOH . 
F 6 HOH A 74 774 126 HOH HOH . 
F 6 HOH A 75 775 23 HOH HOH . 
F 6 HOH A 76 776 93 HOH HOH . 
F 6 HOH A 77 777 44 HOH HOH . 
F 6 HOH A 78 778 40 HOH HOH . 
F 6 HOH A 79 779 200 HOH HOH . 
F 6 HOH A 80 780 8 HOH HOH . 
F 6 HOH A 81 781 15 HOH HOH . 
F 6 HOH A 82 782 25 HOH HOH . 
F 6 HOH A 83 783 190 HOH HOH . 
F 6 HOH A 84 784 121 HOH HOH . 
F 6 HOH A 85 785 52 HOH HOH . 
F 6 HOH A 86 786 14 HOH HOH . 
F 6 HOH A 87 787 5 HOH HOH . 
F 6 HOH A 88 788 156 HOH HOH . 
F 6 HOH A 89 789 89 HOH HOH . 
F 6 HOH A 90 790 62 HOH HOH . 
F 6 HOH A 91 791 45 HOH HOH . 
F 6 HOH A 92 792 135 HOH HOH . 
F 6 HOH A 93 793 302 HOH HOH . 
F 6 HOH A 94 794 18 HOH HOH . 
F 6 HOH A 95 795 46 HOH HOH . 
F 6 HOH A 96 796 69 HOH HOH . 
F 6 HOH A 97 797 48 HOH HOH . 
F 6 HOH A 98 798 241 HOH HOH . 
F 6 HOH A 99 799 35 HOH HOH . 
F 6 HOH A 100 800 6 HOH HOH . 
F 6 HOH A 101 801 29 HOH HOH . 
F 6 HOH A 102 802 88 HOH HOH . 
F 6 HOH A 103 803 59 HOH HOH . 
F 6 HOH A 104 804 127 HOH HOH . 
F 6 HOH A 105 805 37 HOH HOH . 
F 6 HOH A 106 806 119 HOH HOH . 
F 6 HOH A 107 807 157 HOH HOH . 
F 6 HOH A 108 808 146 HOH HOH . 
F 6 HOH A 109 809 100 HOH HOH . 
F 6 HOH A 110 810 234 HOH HOH . 
F 6 HOH A 111 811 64 HOH HOH . 
F 6 HOH A 112 812 181 HOH HOH . 
F 6 HOH A 113 813 41 HOH HOH . 
F 6 HOH A 114 814 301 HOH HOH . 
F 6 HOH A 115 815 185 HOH HOH . 
F 6 HOH A 116 816 205 HOH HOH . 
F 6 HOH A 117 817 30 HOH HOH . 
F 6 HOH A 118 818 73 HOH HOH . 
F 6 HOH A 119 819 51 HOH HOH . 
F 6 HOH A 120 820 79 HOH HOH . 
F 6 HOH A 121 821 87 HOH HOH . 
F 6 HOH A 122 822 13 HOH HOH . 
F 6 HOH A 123 823 39 HOH HOH . 
F 6 HOH A 124 824 129 HOH HOH . 
F 6 HOH A 125 825 158 HOH HOH . 
F 6 HOH A 126 826 176 HOH HOH . 
F 6 HOH A 127 827 287 HOH HOH . 
F 6 HOH A 128 828 136 HOH HOH . 
F 6 HOH A 129 829 57 HOH HOH . 
F 6 HOH A 130 830 32 HOH HOH . 
F 6 HOH A 131 831 108 HOH HOH . 
F 6 HOH A 132 832 96 HOH HOH . 
F 6 HOH A 133 833 296 HOH HOH . 
F 6 HOH A 134 834 166 HOH HOH . 
F 6 HOH A 135 835 237 HOH HOH . 
F 6 HOH A 136 836 107 HOH HOH . 
F 6 HOH A 137 837 72 HOH HOH . 
F 6 HOH A 138 838 56 HOH HOH . 
F 6 HOH A 139 839 94 HOH HOH . 
F 6 HOH A 140 840 78 HOH HOH . 
F 6 HOH A 141 841 42 HOH HOH . 
F 6 HOH A 142 842 74 HOH HOH . 
F 6 HOH A 143 843 283 HOH HOH . 
F 6 HOH A 144 844 178 HOH HOH . 
F 6 HOH A 145 845 144 HOH HOH . 
F 6 HOH A 146 846 85 HOH HOH . 
F 6 HOH A 147 847 95 HOH HOH . 
F 6 HOH A 148 848 162 HOH HOH . 
F 6 HOH A 149 849 84 HOH HOH . 
F 6 HOH A 150 850 102 HOH HOH . 
F 6 HOH A 151 851 11 HOH HOH . 
F 6 HOH A 152 852 58 HOH HOH . 
F 6 HOH A 153 853 138 HOH HOH . 
F 6 HOH A 154 854 92 HOH HOH . 
F 6 HOH A 155 855 180 HOH HOH . 
F 6 HOH A 156 856 114 HOH HOH . 
F 6 HOH A 157 857 54 HOH HOH . 
F 6 HOH A 158 858 110 HOH HOH . 
F 6 HOH A 159 859 118 HOH HOH . 
F 6 HOH A 160 860 172 HOH HOH . 
F 6 HOH A 161 861 187 HOH HOH . 
F 6 HOH A 162 862 250 HOH HOH . 
F 6 HOH A 163 863 112 HOH HOH . 
F 6 HOH A 164 864 300 HOH HOH . 
F 6 HOH A 165 865 169 HOH HOH . 
F 6 HOH A 166 866 165 HOH HOH . 
F 6 HOH A 167 867 86 HOH HOH . 
F 6 HOH A 168 868 293 HOH HOH . 
F 6 HOH A 169 869 70 HOH HOH . 
F 6 HOH A 170 870 203 HOH HOH . 
F 6 HOH A 171 871 149 HOH HOH . 
F 6 HOH A 172 872 20 HOH HOH . 
F 6 HOH A 173 873 124 HOH HOH . 
F 6 HOH A 174 874 279 HOH HOH . 
F 6 HOH A 175 875 133 HOH HOH . 
F 6 HOH A 176 876 151 HOH HOH . 
F 6 HOH A 177 877 269 HOH HOH . 
F 6 HOH A 178 878 128 HOH HOH . 
F 6 HOH A 179 879 290 HOH HOH . 
F 6 HOH A 180 880 134 HOH HOH . 
F 6 HOH A 181 881 150 HOH HOH . 
F 6 HOH A 182 882 233 HOH HOH . 
F 6 HOH A 183 883 202 HOH HOH . 
F 6 HOH A 184 884 142 HOH HOH . 
F 6 HOH A 185 885 295 HOH HOH . 
F 6 HOH A 186 886 286 HOH HOH . 
F 6 HOH A 187 887 263 HOH HOH . 
F 6 HOH A 188 888 249 HOH HOH . 
F 6 HOH A 189 889 306 HOH HOH . 
F 6 HOH A 190 890 139 HOH HOH . 
F 6 HOH A 191 891 242 HOH HOH . 
F 6 HOH A 192 892 307 HOH HOH . 
F 6 HOH A 193 893 210 HOH HOH . 
F 6 HOH A 194 894 170 HOH HOH . 
F 6 HOH A 195 895 308 HOH HOH . 
F 6 HOH A 196 896 261 HOH HOH . 
F 6 HOH A 197 897 47 HOH HOH . 
F 6 HOH A 198 898 204 HOH HOH . 
F 6 HOH A 199 899 216 HOH HOH . 
F 6 HOH A 200 900 245 HOH HOH . 
F 6 HOH A 201 901 258 HOH HOH . 
F 6 HOH A 202 902 145 HOH HOH . 
F 6 HOH A 203 903 120 HOH HOH . 
F 6 HOH A 204 904 265 HOH HOH . 
F 6 HOH A 205 905 82 HOH HOH . 
F 6 HOH A 206 906 105 HOH HOH . 
F 6 HOH A 207 907 115 HOH HOH . 
F 6 HOH A 208 908 292 HOH HOH . 
F 6 HOH A 209 909 208 HOH HOH . 
F 6 HOH A 210 910 183 HOH HOH . 
F 6 HOH A 211 911 199 HOH HOH . 
F 6 HOH A 212 912 223 HOH HOH . 
F 6 HOH A 213 913 137 HOH HOH . 
F 6 HOH A 214 914 260 HOH HOH . 
F 6 HOH A 215 915 117 HOH HOH . 
F 6 HOH A 216 916 155 HOH HOH . 
F 6 HOH A 217 917 153 HOH HOH . 
F 6 HOH A 218 918 148 HOH HOH . 
F 6 HOH A 219 919 122 HOH HOH . 
F 6 HOH A 220 920 173 HOH HOH . 
F 6 HOH A 221 921 225 HOH HOH . 
F 6 HOH A 222 922 201 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -26.692 18.125 -8.923 1 28.44 ? C1 GOL 603 A 1 
HETATM 2 O O1 GOL . . . D 4 -27.093 19.072 -7.988 1 52.39 ? O1 GOL 603 A 1 
HETATM 3 C C2 GOL . . . D 4 -26.517 18.869 -10.264 1 29.93 ? C2 GOL 603 A 1 
HETATM 4 O O2 GOL . . . D 4 -25.371 19.651 -10.278 1 26.52 ? O2 GOL 603 A 1 
HETATM 5 C C3 GOL . . . D 4 -26.474 17.749 -11.322 1 29.43 ? C3 GOL 603 A 1 
HETATM 6 O O3 GOL . . . D 4 -26.334 18.367 -12.562 1 27.07 ? O3 GOL 603 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           486 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#