data_6DQ9 # _model_server_result.job_id uznr6Zw4tIhxncD1powyhg _model_server_result.datetime_utc '2024-11-25 01:49:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6DQ9 # _exptl.entry_id 6DQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.13 _cell.angle_gamma 90 _cell.entry_id 6DQ9 _cell.length_a 117.517 _cell.length_b 62.001 _cell.length_c 46.725 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 223 A CYS 481 1_555 B C17 H74 . A H74 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc2 A OE1 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc4 B N31 H74 . A H74 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc5 C MN MN . A MN 602 1_555 I O HOH . A HOH 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc6 C MN MN . A MN 602 1_555 I O HOH . A HOH 830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 147 n n C1 C2 GOL sing 148 n n C1 H11 GOL sing 149 n n C1 H12 GOL sing 150 n n O1 HO1 GOL sing 151 n n C2 O2 GOL sing 152 n n C2 C3 GOL sing 153 n n C2 H2 GOL sing 154 n n O2 HO2 GOL sing 155 n n C3 O3 GOL sing 156 n n C3 H31 GOL sing 157 n n C3 H32 GOL sing 158 n n O3 HO3 GOL sing 159 n n # _atom_sites.entry_id 6DQ9 _atom_sites.fract_transf_matrix[1][1] 0.008509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H74 A 1 601 1 H74 N69 . C 3 MN A 1 602 1 MN MN . D 4 GOL A 1 603 502 GOL GOL . E 5 DMS A 1 604 601 DMS DMS . F 5 DMS A 1 605 602 DMS DMS . G 6 EDO A 1 606 701 EDO EDO . H 6 EDO A 1 607 702 EDO EDO . I 7 HOH A 1 701 263 HOH HOH . I 7 HOH A 2 702 138 HOH HOH . I 7 HOH A 3 703 173 HOH HOH . I 7 HOH A 4 704 265 HOH HOH . I 7 HOH A 5 705 75 HOH HOH . I 7 HOH A 6 706 117 HOH HOH . I 7 HOH A 7 707 49 HOH HOH . I 7 HOH A 8 708 264 HOH HOH . I 7 HOH A 9 709 127 HOH HOH . I 7 HOH A 10 710 85 HOH HOH . I 7 HOH A 11 711 254 HOH HOH . I 7 HOH A 12 712 4 HOH HOH . I 7 HOH A 13 713 164 HOH HOH . I 7 HOH A 14 714 113 HOH HOH . I 7 HOH A 15 715 32 HOH HOH . I 7 HOH A 16 716 110 HOH HOH . I 7 HOH A 17 717 51 HOH HOH . I 7 HOH A 18 718 90 HOH HOH . I 7 HOH A 19 719 16 HOH HOH . I 7 HOH A 20 720 211 HOH HOH . I 7 HOH A 21 721 8 HOH HOH . I 7 HOH A 22 722 142 HOH HOH . I 7 HOH A 23 723 235 HOH HOH . I 7 HOH A 24 724 192 HOH HOH . I 7 HOH A 25 725 12 HOH HOH . I 7 HOH A 26 726 115 HOH HOH . I 7 HOH A 27 727 253 HOH HOH . I 7 HOH A 28 728 98 HOH HOH . I 7 HOH A 29 729 68 HOH HOH . I 7 HOH A 30 730 39 HOH HOH . I 7 HOH A 31 731 82 HOH HOH . I 7 HOH A 32 732 42 HOH HOH . I 7 HOH A 33 733 94 HOH HOH . I 7 HOH A 34 734 23 HOH HOH . I 7 HOH A 35 735 126 HOH HOH . I 7 HOH A 36 736 208 HOH HOH . I 7 HOH A 37 737 17 HOH HOH . I 7 HOH A 38 738 86 HOH HOH . I 7 HOH A 39 739 84 HOH HOH . I 7 HOH A 40 740 172 HOH HOH . I 7 HOH A 41 741 233 HOH HOH . I 7 HOH A 42 742 33 HOH HOH . I 7 HOH A 43 743 45 HOH HOH . I 7 HOH A 44 744 249 HOH HOH . I 7 HOH A 45 745 22 HOH HOH . I 7 HOH A 46 746 80 HOH HOH . I 7 HOH A 47 747 71 HOH HOH . I 7 HOH A 48 748 44 HOH HOH . I 7 HOH A 49 749 56 HOH HOH . I 7 HOH A 50 750 35 HOH HOH . I 7 HOH A 51 751 5 HOH HOH . I 7 HOH A 52 752 67 HOH HOH . I 7 HOH A 53 753 30 HOH HOH . I 7 HOH A 54 754 214 HOH HOH . I 7 HOH A 55 755 106 HOH HOH . I 7 HOH A 56 756 70 HOH HOH . I 7 HOH A 57 757 231 HOH HOH . I 7 HOH A 58 758 161 HOH HOH . I 7 HOH A 59 759 63 HOH HOH . I 7 HOH A 60 760 47 HOH HOH . I 7 HOH A 61 761 13 HOH HOH . I 7 HOH A 62 762 77 HOH HOH . I 7 HOH A 63 763 104 HOH HOH . I 7 HOH A 64 764 206 HOH HOH . I 7 HOH A 65 765 6 HOH HOH . I 7 HOH A 66 766 129 HOH HOH . I 7 HOH A 67 767 147 HOH HOH . I 7 HOH A 68 768 52 HOH HOH . I 7 HOH A 69 769 105 HOH HOH . I 7 HOH A 70 770 37 HOH HOH . I 7 HOH A 71 771 29 HOH HOH . I 7 HOH A 72 772 10 HOH HOH . I 7 HOH A 73 773 258 HOH HOH . I 7 HOH A 74 774 245 HOH HOH . I 7 HOH A 75 775 31 HOH HOH . I 7 HOH A 76 776 145 HOH HOH . I 7 HOH A 77 777 15 HOH HOH . I 7 HOH A 78 778 78 HOH HOH . I 7 HOH A 79 779 2 HOH HOH . I 7 HOH A 80 780 66 HOH HOH . I 7 HOH A 81 781 207 HOH HOH . I 7 HOH A 82 782 73 HOH HOH . I 7 HOH A 83 783 108 HOH HOH . I 7 HOH A 84 784 240 HOH HOH . I 7 HOH A 85 785 38 HOH HOH . I 7 HOH A 86 786 134 HOH HOH . I 7 HOH A 87 787 111 HOH HOH . I 7 HOH A 88 788 96 HOH HOH . I 7 HOH A 89 789 213 HOH HOH . I 7 HOH A 90 790 1 HOH HOH . I 7 HOH A 91 791 3 HOH HOH . I 7 HOH A 92 792 109 HOH HOH . I 7 HOH A 93 793 60 HOH HOH . I 7 HOH A 94 794 65 HOH HOH . I 7 HOH A 95 795 79 HOH HOH . I 7 HOH A 96 796 25 HOH HOH . I 7 HOH A 97 797 131 HOH HOH . I 7 HOH A 98 798 40 HOH HOH . I 7 HOH A 99 799 212 HOH HOH . I 7 HOH A 100 800 14 HOH HOH . I 7 HOH A 101 801 21 HOH HOH . I 7 HOH A 102 802 53 HOH HOH . I 7 HOH A 103 803 140 HOH HOH . I 7 HOH A 104 804 176 HOH HOH . I 7 HOH A 105 805 203 HOH HOH . I 7 HOH A 106 806 28 HOH HOH . I 7 HOH A 107 807 58 HOH HOH . I 7 HOH A 108 808 36 HOH HOH . I 7 HOH A 109 809 26 HOH HOH . I 7 HOH A 110 810 187 HOH HOH . I 7 HOH A 111 811 46 HOH HOH . I 7 HOH A 112 812 81 HOH HOH . I 7 HOH A 113 813 91 HOH HOH . I 7 HOH A 114 814 123 HOH HOH . I 7 HOH A 115 815 169 HOH HOH . I 7 HOH A 116 816 157 HOH HOH . I 7 HOH A 117 817 27 HOH HOH . I 7 HOH A 118 818 125 HOH HOH . I 7 HOH A 119 819 230 HOH HOH . I 7 HOH A 120 820 7 HOH HOH . I 7 HOH A 121 821 174 HOH HOH . I 7 HOH A 122 822 43 HOH HOH . I 7 HOH A 123 823 54 HOH HOH . I 7 HOH A 124 824 158 HOH HOH . I 7 HOH A 125 825 69 HOH HOH . I 7 HOH A 126 826 41 HOH HOH . I 7 HOH A 127 827 19 HOH HOH . I 7 HOH A 128 828 87 HOH HOH . I 7 HOH A 129 829 50 HOH HOH . I 7 HOH A 130 830 34 HOH HOH . I 7 HOH A 131 831 76 HOH HOH . I 7 HOH A 132 832 180 HOH HOH . I 7 HOH A 133 833 74 HOH HOH . I 7 HOH A 134 834 64 HOH HOH . I 7 HOH A 135 835 191 HOH HOH . I 7 HOH A 136 836 130 HOH HOH . I 7 HOH A 137 837 244 HOH HOH . I 7 HOH A 138 838 57 HOH HOH . I 7 HOH A 139 839 139 HOH HOH . I 7 HOH A 140 840 18 HOH HOH . I 7 HOH A 141 841 179 HOH HOH . I 7 HOH A 142 842 226 HOH HOH . I 7 HOH A 143 843 159 HOH HOH . I 7 HOH A 144 844 144 HOH HOH . I 7 HOH A 145 845 61 HOH HOH . I 7 HOH A 146 846 112 HOH HOH . I 7 HOH A 147 847 162 HOH HOH . I 7 HOH A 148 848 124 HOH HOH . I 7 HOH A 149 849 83 HOH HOH . I 7 HOH A 150 850 11 HOH HOH . I 7 HOH A 151 851 137 HOH HOH . I 7 HOH A 152 852 260 HOH HOH . I 7 HOH A 153 853 204 HOH HOH . I 7 HOH A 154 854 24 HOH HOH . I 7 HOH A 155 855 221 HOH HOH . I 7 HOH A 156 856 62 HOH HOH . I 7 HOH A 157 857 132 HOH HOH . I 7 HOH A 158 858 120 HOH HOH . I 7 HOH A 159 859 107 HOH HOH . I 7 HOH A 160 860 181 HOH HOH . I 7 HOH A 161 861 197 HOH HOH . I 7 HOH A 162 862 182 HOH HOH . I 7 HOH A 163 863 153 HOH HOH . I 7 HOH A 164 864 59 HOH HOH . I 7 HOH A 165 865 234 HOH HOH . I 7 HOH A 166 866 209 HOH HOH . I 7 HOH A 167 867 261 HOH HOH . I 7 HOH A 168 868 255 HOH HOH . I 7 HOH A 169 869 166 HOH HOH . I 7 HOH A 170 870 251 HOH HOH . I 7 HOH A 171 871 256 HOH HOH . I 7 HOH A 172 872 136 HOH HOH . I 7 HOH A 173 873 154 HOH HOH . I 7 HOH A 174 874 220 HOH HOH . I 7 HOH A 175 875 55 HOH HOH . I 7 HOH A 176 876 133 HOH HOH . I 7 HOH A 177 877 241 HOH HOH . I 7 HOH A 178 878 148 HOH HOH . I 7 HOH A 179 879 205 HOH HOH . I 7 HOH A 180 880 135 HOH HOH . I 7 HOH A 181 881 229 HOH HOH . I 7 HOH A 182 882 170 HOH HOH . I 7 HOH A 183 883 239 HOH HOH . I 7 HOH A 184 884 122 HOH HOH . I 7 HOH A 185 885 171 HOH HOH . I 7 HOH A 186 886 227 HOH HOH . I 7 HOH A 187 887 128 HOH HOH . I 7 HOH A 188 888 232 HOH HOH . I 7 HOH A 189 889 266 HOH HOH . I 7 HOH A 190 890 262 HOH HOH . I 7 HOH A 191 891 95 HOH HOH . I 7 HOH A 192 892 168 HOH HOH . I 7 HOH A 193 893 219 HOH HOH . I 7 HOH A 194 894 97 HOH HOH . I 7 HOH A 195 895 259 HOH HOH . I 7 HOH A 196 896 237 HOH HOH . I 7 HOH A 197 897 88 HOH HOH . I 7 HOH A 198 898 215 HOH HOH . I 7 HOH A 199 899 103 HOH HOH . I 7 HOH A 200 900 236 HOH HOH . I 7 HOH A 201 901 141 HOH HOH . I 7 HOH A 202 902 225 HOH HOH . I 7 HOH A 203 903 89 HOH HOH . I 7 HOH A 204 904 99 HOH HOH . I 7 HOH A 205 905 92 HOH HOH . I 7 HOH A 206 906 193 HOH HOH . I 7 HOH A 207 907 186 HOH HOH . I 7 HOH A 208 908 196 HOH HOH . I 7 HOH A 209 909 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -26.843 17.35 -8.798 1 30.93 ? C1 GOL 603 A 1 HETATM 2 O O1 GOL . . . D 4 -27.264 18.359 -7.931 1 59.66 ? O1 GOL 603 A 1 HETATM 3 C C2 GOL . . . D 4 -26.572 18.016 -10.17 1 77.56 ? C2 GOL 603 A 1 HETATM 4 O O2 GOL . . . D 4 -25.405 18.766 -10.17 1 31.97 ? O2 GOL 603 A 1 HETATM 5 C C3 GOL . . . D 4 -26.507 16.847 -11.175 1 36.64 ? C3 GOL 603 A 1 HETATM 6 O O3 GOL . . . D 4 -26.199 17.408 -12.41 1 34.73 ? O3 GOL 603 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #