data_6DQB # _model_server_result.job_id miJCBrY_HyOfhKxSaiBTzQ _model_server_result.datetime_utc '2024-11-18 10:45:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 6DQB # _exptl.entry_id 6DQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.24 _cell.angle_gamma 90 _cell.entry_id 6DQB _cell.length_a 117.007 _cell.length_b 62.325 _cell.length_c 46.751 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 223 A CYS 481 1_555 C C18 HZV . A HZV 602 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.765 ? covale ? covale2 A SG CYS 223 A CYS 481 1_555 D C18 HZM . A HZM 603 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.766 ? metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 E MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc2 A OE1 GLU 227 A GLU 485 1_555 E MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 E MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 B N35 H77 . A H77 601 1_555 E MN MN . A MN 604 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 C N35 HZV . A HZV 602 1_555 E MN MN . A MN 604 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc6 D N35 HZM . A HZM 603 1_555 E MN MN . A MN 604 1_555 ? C ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 E MN MN . A MN 604 1_555 J O HOH . A HOH 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 E MN MN . A MN 604 1_555 J O HOH . A HOH 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 6DQB _atom_sites.fract_transf_matrix[1][1] 0.008546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000334 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H77 A 1 601 601 H77 H77 . C 3 HZV A 1 602 602 HZV H77 . D 4 HZM A 1 603 603 HZM H77 . E 5 MN A 1 604 604 MN MN . F 6 GOL A 1 605 605 GOL GOL . G 6 GOL A 1 606 606 GOL GOL . H 7 DMS A 1 607 607 DMS DMS . I 7 DMS A 1 608 608 DMS DMS . J 8 HOH A 1 701 703 HOH HOH . J 8 HOH A 2 702 704 HOH HOH . J 8 HOH A 3 703 702 HOH HOH . J 8 HOH A 4 704 701 HOH HOH . J 8 HOH A 5 705 705 HOH HOH . J 8 HOH A 6 706 709 HOH HOH . J 8 HOH A 7 707 707 HOH HOH . J 8 HOH A 8 708 706 HOH HOH . J 8 HOH A 9 709 708 HOH HOH . J 8 HOH A 10 710 711 HOH HOH . J 8 HOH A 11 711 712 HOH HOH . J 8 HOH A 12 712 714 HOH HOH . J 8 HOH A 13 713 716 HOH HOH . J 8 HOH A 14 714 715 HOH HOH . J 8 HOH A 15 715 721 HOH HOH . J 8 HOH A 16 716 713 HOH HOH . J 8 HOH A 17 717 710 HOH HOH . J 8 HOH A 18 718 717 HOH HOH . J 8 HOH A 19 719 726 HOH HOH . J 8 HOH A 20 720 718 HOH HOH . J 8 HOH A 21 721 727 HOH HOH . J 8 HOH A 22 722 722 HOH HOH . J 8 HOH A 23 723 725 HOH HOH . J 8 HOH A 24 724 723 HOH HOH . J 8 HOH A 25 725 720 HOH HOH . J 8 HOH A 26 726 728 HOH HOH . J 8 HOH A 27 727 734 HOH HOH . J 8 HOH A 28 728 724 HOH HOH . J 8 HOH A 29 729 733 HOH HOH . J 8 HOH A 30 730 719 HOH HOH . J 8 HOH A 31 731 729 HOH HOH . J 8 HOH A 32 732 731 HOH HOH . J 8 HOH A 33 733 740 HOH HOH . J 8 HOH A 34 734 736 HOH HOH . J 8 HOH A 35 735 732 HOH HOH . J 8 HOH A 36 736 730 HOH HOH . J 8 HOH A 37 737 747 HOH HOH . J 8 HOH A 38 738 738 HOH HOH . J 8 HOH A 39 739 739 HOH HOH . J 8 HOH A 40 740 759 HOH HOH . J 8 HOH A 41 741 745 HOH HOH . J 8 HOH A 42 742 744 HOH HOH . J 8 HOH A 43 743 737 HOH HOH . J 8 HOH A 44 744 748 HOH HOH . J 8 HOH A 45 745 756 HOH HOH . J 8 HOH A 46 746 749 HOH HOH . J 8 HOH A 47 747 784 HOH HOH . J 8 HOH A 48 748 746 HOH HOH . J 8 HOH A 49 749 772 HOH HOH . J 8 HOH A 50 750 755 HOH HOH . J 8 HOH A 51 751 743 HOH HOH . J 8 HOH A 52 752 762 HOH HOH . J 8 HOH A 53 753 750 HOH HOH . J 8 HOH A 54 754 764 HOH HOH . J 8 HOH A 55 755 735 HOH HOH . J 8 HOH A 56 756 769 HOH HOH . J 8 HOH A 57 757 773 HOH HOH . J 8 HOH A 58 758 754 HOH HOH . J 8 HOH A 59 759 758 HOH HOH . J 8 HOH A 60 760 767 HOH HOH . J 8 HOH A 61 761 770 HOH HOH . J 8 HOH A 62 762 771 HOH HOH . J 8 HOH A 63 763 757 HOH HOH . J 8 HOH A 64 764 753 HOH HOH . J 8 HOH A 65 765 752 HOH HOH . J 8 HOH A 66 766 742 HOH HOH . J 8 HOH A 67 767 751 HOH HOH . J 8 HOH A 68 768 768 HOH HOH . J 8 HOH A 69 769 766 HOH HOH . J 8 HOH A 70 770 763 HOH HOH . J 8 HOH A 71 771 765 HOH HOH . J 8 HOH A 72 772 761 HOH HOH . J 8 HOH A 73 773 774 HOH HOH . J 8 HOH A 74 774 785 HOH HOH . J 8 HOH A 75 775 741 HOH HOH . J 8 HOH A 76 776 779 HOH HOH . J 8 HOH A 77 777 775 HOH HOH . J 8 HOH A 78 778 781 HOH HOH . J 8 HOH A 79 779 790 HOH HOH . J 8 HOH A 80 780 776 HOH HOH . J 8 HOH A 81 781 760 HOH HOH . J 8 HOH A 82 782 777 HOH HOH . J 8 HOH A 83 783 782 HOH HOH . J 8 HOH A 84 784 786 HOH HOH . J 8 HOH A 85 785 778 HOH HOH . J 8 HOH A 86 786 783 HOH HOH . J 8 HOH A 87 787 780 HOH HOH . J 8 HOH A 88 788 800 HOH HOH . J 8 HOH A 89 789 795 HOH HOH . J 8 HOH A 90 790 788 HOH HOH . J 8 HOH A 91 791 809 HOH HOH . J 8 HOH A 92 792 805 HOH HOH . J 8 HOH A 93 793 787 HOH HOH . J 8 HOH A 94 794 792 HOH HOH . J 8 HOH A 95 795 794 HOH HOH . J 8 HOH A 96 796 796 HOH HOH . J 8 HOH A 97 797 793 HOH HOH . J 8 HOH A 98 798 791 HOH HOH . J 8 HOH A 99 799 789 HOH HOH . J 8 HOH A 100 800 797 HOH HOH . J 8 HOH A 101 801 808 HOH HOH . J 8 HOH A 102 802 802 HOH HOH . J 8 HOH A 103 803 804 HOH HOH . J 8 HOH A 104 804 801 HOH HOH . J 8 HOH A 105 805 799 HOH HOH . J 8 HOH A 106 806 806 HOH HOH . J 8 HOH A 107 807 803 HOH HOH . J 8 HOH A 108 808 816 HOH HOH . J 8 HOH A 109 809 815 HOH HOH . J 8 HOH A 110 810 810 HOH HOH . J 8 HOH A 111 811 798 HOH HOH . J 8 HOH A 112 812 814 HOH HOH . J 8 HOH A 113 813 807 HOH HOH . J 8 HOH A 114 814 813 HOH HOH . J 8 HOH A 115 815 812 HOH HOH . J 8 HOH A 116 816 811 HOH HOH . J 8 HOH A 117 817 818 HOH HOH . J 8 HOH A 118 818 817 HOH HOH . J 8 HOH A 119 819 822 HOH HOH . J 8 HOH A 120 820 820 HOH HOH . J 8 HOH A 121 821 821 HOH HOH . J 8 HOH A 122 822 819 HOH HOH . J 8 HOH A 123 823 823 HOH HOH . J 8 HOH A 124 824 824 HOH HOH . J 8 HOH A 125 825 825 HOH HOH . J 8 HOH A 126 826 826 HOH HOH . J 8 HOH A 127 827 828 HOH HOH . J 8 HOH A 128 828 827 HOH HOH . J 8 HOH A 129 829 829 HOH HOH . J 8 HOH A 130 830 831 HOH HOH . J 8 HOH A 131 831 832 HOH HOH . J 8 HOH A 132 832 833 HOH HOH . J 8 HOH A 133 833 834 HOH HOH . J 8 HOH A 134 834 838 HOH HOH . J 8 HOH A 135 835 830 HOH HOH . J 8 HOH A 136 836 835 HOH HOH . J 8 HOH A 137 837 839 HOH HOH . J 8 HOH A 138 838 840 HOH HOH . J 8 HOH A 139 839 836 HOH HOH . J 8 HOH A 140 840 837 HOH HOH . J 8 HOH A 141 841 841 HOH HOH . J 8 HOH A 142 842 842 HOH HOH . J 8 HOH A 143 843 843 HOH HOH . J 8 HOH A 144 844 844 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 -25.495 5.609 27.18 1 78.79 ? C1 GOL 606 A 1 HETATM 2 O O1 GOL . . . G 6 -25.367 6.811 26.47 1 78.12 ? O1 GOL 606 A 1 HETATM 3 C C2 GOL . . . G 6 -25.692 5.966 28.684 1 78.55 ? C2 GOL 606 A 1 HETATM 4 O O2 GOL . . . G 6 -27.007 6.306 28.982 1 75.92 ? O2 GOL 606 A 1 HETATM 5 C C3 GOL . . . G 6 -25.227 4.709 29.46 1 79.58 ? C3 GOL 606 A 1 HETATM 6 O O3 GOL . . . G 6 -25.512 4.938 30.809 1 77.82 ? O3 GOL 606 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #