data_6DQN # _model_server_result.job_id dK5TJiVKU51v9Xm0PExZpA _model_server_result.datetime_utc '2024-12-22 06:13:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3002}' # _entry.id 6DQN # _exptl.entry_id 6DQN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 420.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DQN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc2 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc3 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc5 B SG CYS 2538 B CYS 2538 1_555 G ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc6 B SG CYS 2541 B CYS 2541 1_555 G ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc7 B NE2 HIS 2558 B HIS 2558 1_555 G ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc8 B ND1 HIS 2563 B HIS 2563 1_555 G ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc9 C SG CYS 2538 C CYS 2538 1_555 I ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc10 C SG CYS 2541 C CYS 2541 1_555 I ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc11 C NE2 HIS 2558 C HIS 2558 1_555 I ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc12 C ND1 HIS 2563 C HIS 2563 1_555 I ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc13 D SG CYS 2538 D CYS 2538 1_555 K ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc14 D SG CYS 2541 D CYS 2541 1_555 K ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc15 D NE2 HIS 2558 D HIS 2558 1_555 K ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc16 D ND1 HIS 2563 D HIS 2563 1_555 K ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I3P sing 150 n n C1 C6 I3P sing 151 n n C1 O1 I3P sing 152 n n C1 H1 I3P sing 153 n n C2 C3 I3P sing 154 n n C2 O2 I3P sing 155 n n C2 H2 I3P sing 156 n n C3 C4 I3P sing 157 n n C3 O3 I3P sing 158 n n C3 H3 I3P sing 159 n n C4 C5 I3P sing 160 n n C4 O4 I3P sing 161 n n C4 H4 I3P sing 162 n n C5 C6 I3P sing 163 n n C5 O5 I3P sing 164 n n C5 H5 I3P sing 165 n n C6 O6 I3P sing 166 n n C6 H6 I3P sing 167 n n O1 P1 I3P sing 168 n n O2 HO2 I3P sing 169 n n O3 HO3 I3P sing 170 n n O4 P4 I3P sing 171 n n O5 P5 I3P sing 172 n n O6 HO6 I3P sing 173 n n P1 O11 I3P doub 174 n n P1 O12 I3P sing 175 n n P1 O13 I3P sing 176 n n O12 HO12 I3P sing 177 n n O13 HO13 I3P sing 178 n n P4 O41 I3P doub 179 n n P4 O42 I3P sing 180 n n P4 O43 I3P sing 181 n n O42 HO42 I3P sing 182 n n O43 HO43 I3P sing 183 n n P5 O51 I3P doub 184 n n P5 O52 I3P sing 185 n n P5 O53 I3P sing 186 n n O52 HO52 I3P sing 187 n n O53 HO53 I3P sing 188 n n # _atom_sites.entry_id 6DQN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 3001 3001 ZN ZN . F 3 I3P A 1 3002 3002 I3P I3P . G 2 ZN B 1 3001 3001 ZN ZN . H 3 I3P B 1 3002 3002 I3P I3P . I 2 ZN C 1 3001 3001 ZN ZN . J 3 I3P C 1 3002 3002 I3P I3P . K 2 ZN D 1 3001 3001 ZN ZN . L 3 I3P D 1 3002 3002 I3P I3P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . F 3 243.937 260.415 166.896 1 98.24 ? C1 I3P 3002 A 1 HETATM 2 C C2 I3P . . . F 3 244.399 259.392 165.855 1 98.24 ? C2 I3P 3002 A 1 HETATM 3 C C3 I3P . . . F 3 244.029 259.816 164.431 1 98.24 ? C3 I3P 3002 A 1 HETATM 4 C C4 I3P . . . F 3 242.509 259.882 164.249 1 98.24 ? C4 I3P 3002 A 1 HETATM 5 C C5 I3P . . . F 3 241.787 260.434 165.486 1 98.24 ? C5 I3P 3002 A 1 HETATM 6 C C6 I3P . . . F 3 242.704 261.21 166.442 1 98.24 ? C6 I3P 3002 A 1 HETATM 7 O O1 I3P . . . F 3 244.988 261.318 167.13 1 98.24 ? O1 I3P 3002 A 1 HETATM 8 O O2 I3P . . . F 3 245.797 259.256 165.944 1 98.24 ? O2 I3P 3002 A 1 HETATM 9 O O3 I3P . . . F 3 244.59 261.078 164.161 1 98.24 ? O3 I3P 3002 A 1 HETATM 10 O O4 I3P . . . F 3 242.034 258.583 163.992 1 98.24 ? O4 I3P 3002 A 1 HETATM 11 O O5 I3P . . . F 3 240.781 261.312 165.046 1 98.24 ? O5 I3P 3002 A 1 HETATM 12 O O6 I3P . . . F 3 241.963 261.559 167.585 1 98.24 ? O6 I3P 3002 A 1 HETATM 13 P P1 I3P . . . F 3 245.062 262.071 168.593 1 98.24 ? P1 I3P 3002 A 1 HETATM 14 O O11 I3P . . . F 3 246.193 263.07 168.587 1 98.24 ? O11 I3P 3002 A 1 HETATM 15 O O12 I3P . . . F 3 243.759 262.786 168.857 1 98.24 ? O12 I3P 3002 A 1 HETATM 16 O O13 I3P . . . F 3 245.3 261.045 169.675 1 98.24 ? O13 I3P 3002 A 1 HETATM 17 P P4 I3P . . . F 3 241.952 258.063 162.43 1 98.24 ? P4 I3P 3002 A 1 HETATM 18 O O41 I3P . . . F 3 242.982 258.788 161.6 1 98.24 ? O41 I3P 3002 A 1 HETATM 19 O O42 I3P . . . F 3 240.577 258.338 161.872 1 98.24 ? O42 I3P 3002 A 1 HETATM 20 O O43 I3P . . . F 3 242.223 256.579 162.382 1 98.24 ? O43 I3P 3002 A 1 HETATM 21 P P5 I3P . . . F 3 239.29 260.707 164.697 1 98.24 ? P5 I3P 3002 A 1 HETATM 22 O O51 I3P . . . F 3 238.649 261.542 163.616 1 98.24 ? O51 I3P 3002 A 1 HETATM 23 O O52 I3P . . . F 3 239.418 259.281 164.22 1 98.24 ? O52 I3P 3002 A 1 HETATM 24 O O53 I3P . . . F 3 238.43 260.743 165.936 1 98.24 ? O53 I3P 3002 A 1 HETATM 25 H H1 I3P . . . F 3 243.725 259.95 167.72 1 98.24 ? H1 I3P 3002 A 1 HETATM 26 H H2 I3P . . . F 3 243.981 258.538 166.047 1 98.24 ? H2 I3P 3002 A 1 HETATM 27 H H3 I3P . . . F 3 244.39 259.167 163.808 1 98.24 ? H3 I3P 3002 A 1 HETATM 28 H H4 I3P . . . F 3 242.309 260.451 163.49 1 98.24 ? H4 I3P 3002 A 1 HETATM 29 H H5 I3P . . . F 3 241.381 259.697 165.968 1 98.24 ? H5 I3P 3002 A 1 HETATM 30 H H6 I3P . . . F 3 243.002 262.019 165.998 1 98.24 ? H6 I3P 3002 A 1 HETATM 31 H HO2 I3P . . . F 3 245.994 258.44 166.075 1 98.24 ? HO2 I3P 3002 A 1 HETATM 32 H HO3 I3P . . . F 3 245.103 261.021 163.486 1 98.24 ? HO3 I3P 3002 A 1 HETATM 33 H HO6 I3P . . . F 3 241.575 260.868 167.893 1 98.24 ? HO6 I3P 3002 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 200 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #