data_6DQN
#
_model_server_result.job_id            FhAM9X4qftiy_MGzN2cVgg 
_model_server_result.datetime_utc      '2024-10-19 03:46:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dqn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":3002}' 
#
_entry.id    6DQN 
#
_exptl.entry_id    6DQN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              420.096 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DQN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DQN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc2 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc3 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc4 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc5 B SG CYS 2538 B CYS 2538 1_555 G ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc6 B SG CYS 2541 B CYS 2541 1_555 G ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc7 B NE2 HIS 2558 B HIS 2558 1_555 G ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc8 B ND1 HIS 2563 B HIS 2563 1_555 G ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc9 C SG CYS 2538 C CYS 2538 1_555 I ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc10 C SG CYS 2541 C CYS 2541 1_555 I ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc11 C NE2 HIS 2558 C HIS 2558 1_555 I ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc12 C ND1 HIS 2563 C HIS 2563 1_555 I ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc13 D SG CYS 2538 D CYS 2538 1_555 K ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc14 D SG CYS 2541 D CYS 2541 1_555 K ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc15 D NE2 HIS 2558 D HIS 2558 1_555 K ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc16 D ND1 HIS 2563 D HIS 2563 1_555 K ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
#
_chem_comp.formula           'C6 H15 O15 P3' 
_chem_comp.formula_weight    420.096 
_chem_comp.id                I3P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6DQN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 3001 3001 ZN ZN . 
F 3 I3P A 1 3002 3002 I3P I3P . 
G 2 ZN B 1 3001 3001 ZN ZN . 
H 3 I3P B 1 3002 3002 I3P I3P . 
I 2 ZN C 1 3001 3001 ZN ZN . 
J 3 I3P C 1 3002 3002 I3P I3P . 
K 2 ZN D 1 3001 3001 ZN ZN . 
L 3 I3P D 1 3002 3002 I3P I3P . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 I3P . . . J 3 173.88 157.4 166.91 1 98.17 ? C1 I3P 3002 C 1 
HETATM 2 C C2 I3P . . . J 3 173.419 158.424 165.87 1 98.17 ? C2 I3P 3002 C 1 
HETATM 3 C C3 I3P . . . J 3 173.789 158 164.446 1 98.17 ? C3 I3P 3002 C 1 
HETATM 4 C C4 I3P . . . J 3 175.31 157.934 164.264 1 98.17 ? C4 I3P 3002 C 1 
HETATM 5 C C5 I3P . . . J 3 176.031 157.381 165.501 1 98.17 ? C5 I3P 3002 C 1 
HETATM 6 C C6 I3P . . . J 3 175.113 156.605 166.456 1 98.17 ? C6 I3P 3002 C 1 
HETATM 7 O O1 I3P . . . J 3 172.828 156.497 167.143 1 98.17 ? O1 I3P 3002 C 1 
HETATM 8 O O2 I3P . . . J 3 172.021 158.56 165.958 1 98.17 ? O2 I3P 3002 C 1 
HETATM 9 O O3 I3P . . . J 3 173.228 156.739 164.174 1 98.17 ? O3 I3P 3002 C 1 
HETATM 10 O O4 I3P . . . J 3 175.785 159.233 164.008 1 98.17 ? O4 I3P 3002 C 1 
HETATM 11 O O5 I3P . . . J 3 177.036 156.502 165.061 1 98.17 ? O5 I3P 3002 C 1 
HETATM 12 O O6 I3P . . . J 3 175.853 156.254 167.599 1 98.17 ? O6 I3P 3002 C 1 
HETATM 13 P P1 I3P . . . J 3 172.753 155.743 168.606 1 98.17 ? P1 I3P 3002 C 1 
HETATM 14 O O11 I3P . . . J 3 171.622 154.745 168.598 1 98.17 ? O11 I3P 3002 C 1 
HETATM 15 O O12 I3P . . . J 3 174.056 155.028 168.87 1 98.17 ? O12 I3P 3002 C 1 
HETATM 16 O O13 I3P . . . J 3 172.515 156.769 169.688 1 98.17 ? O13 I3P 3002 C 1 
HETATM 17 P P4 I3P . . . J 3 175.868 159.754 162.447 1 98.17 ? P4 I3P 3002 C 1 
HETATM 18 O O41 I3P . . . J 3 174.838 159.03 161.616 1 98.17 ? O41 I3P 3002 C 1 
HETATM 19 O O42 I3P . . . J 3 177.244 159.478 161.889 1 98.17 ? O42 I3P 3002 C 1 
HETATM 20 O O43 I3P . . . J 3 175.598 161.238 162.399 1 98.17 ? O43 I3P 3002 C 1 
HETATM 21 P P5 I3P . . . J 3 178.528 157.107 164.713 1 98.17 ? P5 I3P 3002 C 1 
HETATM 22 O O51 I3P . . . J 3 179.169 156.272 163.632 1 98.17 ? O51 I3P 3002 C 1 
HETATM 23 O O52 I3P . . . J 3 178.401 158.533 164.237 1 98.17 ? O52 I3P 3002 C 1 
HETATM 24 O O53 I3P . . . J 3 179.387 157.07 165.953 1 98.17 ? O53 I3P 3002 C 1 
HETATM 25 H H1 I3P . . . J 3 174.092 157.864 167.735 1 98.17 ? H1 I3P 3002 C 1 
HETATM 26 H H2 I3P . . . J 3 173.837 159.278 166.063 1 98.17 ? H2 I3P 3002 C 1 
HETATM 27 H H3 I3P . . . J 3 173.428 158.65 163.823 1 98.17 ? H3 I3P 3002 C 1 
HETATM 28 H H4 I3P . . . J 3 175.51 157.365 163.504 1 98.17 ? H4 I3P 3002 C 1 
HETATM 29 H H5 I3P . . . J 3 176.438 158.117 165.984 1 98.17 ? H5 I3P 3002 C 1 
HETATM 30 H H6 I3P . . . J 3 174.815 155.796 166.011 1 98.17 ? H6 I3P 3002 C 1 
HETATM 31 H HO2 I3P . . . J 3 171.824 159.376 166.09 1 98.17 ? HO2 I3P 3002 C 1 
HETATM 32 H HO3 I3P . . . J 3 172.715 156.797 163.499 1 98.17 ? HO3 I3P 3002 C 1 
HETATM 33 H HO6 I3P . . . J 3 176.217 155.495 167.479 1 98.17 ? HO6 I3P 3002 C 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    175 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           33 
#