data_6DQV
#
_model_server_result.job_id            LQCqRp_WOOxNCQhT5gqmFQ 
_model_server_result.datetime_utc      '2024-10-19 03:36:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dqv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":3002}' 
#
_entry.id    6DQV 
#
_exptl.entry_id    6DQV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              420.096 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DQV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DQV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc2 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc3 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc4 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc5 B SG CYS 2538 B CYS 2538 1_555 G ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? 
metalc ? metalc6 B SG CYS 2541 B CYS 2541 1_555 G ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc7 B NE2 HIS 2558 B HIS 2558 1_555 G ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc8 B ND1 HIS 2563 B HIS 2563 1_555 G ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc9 C SG CYS 2538 C CYS 2538 1_555 I ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc10 C SG CYS 2541 C CYS 2541 1_555 I ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc11 C NE2 HIS 2558 C HIS 2558 1_555 I ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc12 C ND1 HIS 2563 C HIS 2563 1_555 I ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc13 D SG CYS 2538 D CYS 2538 1_555 K ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc14 D SG CYS 2541 D CYS 2541 1_555 K ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc15 D NE2 HIS 2558 D HIS 2558 1_555 K ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc16 D ND1 HIS 2563 D HIS 2563 1_555 K ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
#
_chem_comp.formula           'C6 H15 O15 P3' 
_chem_comp.formula_weight    420.096 
_chem_comp.id                I3P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6DQV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 3001 3001 ZN ZN . 
F 3 I3P A 1 3002 3002 I3P I3P . 
G 2 ZN B 1 3001 3001 ZN ZN . 
H 3 I3P B 1 3002 3002 I3P I3P . 
I 2 ZN C 1 3001 3001 ZN ZN . 
J 3 I3P C 1 3002 3002 I3P I3P . 
K 2 ZN D 1 3001 3001 ZN ZN . 
L 3 I3P D 1 3002 3002 I3P I3P . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 I3P . . . L 3 168.842 161.32 168.148 1 134.73 ? C1 I3P 3002 D 1 
HETATM 2 C C2 I3P . . . L 3 168.099 162.545 167.606 1 134.73 ? C2 I3P 3002 D 1 
HETATM 3 C C3 I3P . . . L 3 168.142 162.618 166.078 1 134.73 ? C3 I3P 3002 D 1 
HETATM 4 C C4 I3P . . . L 3 169.573 162.731 165.538 1 134.73 ? C4 I3P 3002 D 1 
HETATM 5 C C5 I3P . . . L 3 170.612 162.107 166.477 1 134.73 ? C5 I3P 3002 D 1 
HETATM 6 C C6 I3P . . . L 3 170.046 160.929 167.278 1 134.73 ? C6 I3P 3002 D 1 
HETATM 7 O O1 I3P . . . L 3 167.946 160.237 168.192 1 134.73 ? O1 I3P 3002 D 1 
HETATM 8 O O2 I3P . . . L 3 166.753 162.474 168.012 1 134.73 ? O2 I3P 3002 D 1 
HETATM 9 O O3 I3P . . . L 3 167.55 161.456 165.554 1 134.73 ? O3 I3P 3002 D 1 
HETATM 10 O O4 I3P . . . L 3 169.884 164.089 165.367 1 134.73 ? O4 I3P 3002 D 1 
HETATM 11 O O5 I3P . . . L 3 171.689 161.645 165.699 1 134.73 ? O5 I3P 3002 D 1 
HETATM 12 O O6 I3P . . . L 3 171.06 160.428 168.114 1 134.73 ? O6 I3P 3002 D 1 
HETATM 13 P P1 I3P . . . L 3 167.232 159.865 169.63 1 134.73 ? P1 I3P 3002 D 1 
HETATM 14 O O11 I3P . . . L 3 166.38 158.63 169.46 1 134.73 ? O11 I3P 3002 D 1 
HETATM 15 O O12 I3P . . . L 3 168.295 159.607 170.669 1 134.73 ? O12 I3P 3002 D 1 
HETATM 16 O O13 I3P . . . L 3 166.364 161.019 170.07 1 134.73 ? O13 I3P 3002 D 1 
HETATM 17 P P4 I3P . . . L 3 169.507 164.796 163.929 1 134.73 ? P4 I3P 3002 D 1 
HETATM 18 O O41 I3P . . . L 3 170.063 163.963 162.8 1 134.73 ? O41 I3P 3002 D 1 
HETATM 19 O O42 I3P . . . L 3 168.007 164.901 163.789 1 134.73 ? O42 I3P 3002 D 1 
HETATM 20 O O43 I3P . . . L 3 170.12 166.174 163.878 1 134.73 ? O43 I3P 3002 D 1 
HETATM 21 P P5 I3P . . . L 3 173.221 161.783 166.291 1 134.73 ? P5 I3P 3002 D 1 
HETATM 22 O O51 I3P . . . L 3 173.84 163.067 165.794 1 134.73 ? O51 I3P 3002 D 1 
HETATM 23 O O52 I3P . . . L 3 174.049 160.614 165.818 1 134.73 ? O52 I3P 3002 D 1 
HETATM 24 O O53 I3P . . . L 3 173.18 161.795 167.8 1 134.73 ? O53 I3P 3002 D 1 
HETATM 25 H H1 I3P . . . L 3 169.152 161.513 169.046 1 134.73 ? H1 I3P 3002 D 1 
HETATM 26 H H2 I3P . . . L 3 168.503 163.347 167.97 1 134.73 ? H2 I3P 3002 D 1 
HETATM 27 H H3 I3P . . . L 3 167.637 163.392 165.789 1 134.73 ? H3 I3P 3002 D 1 
HETATM 28 H H4 I3P . . . L 3 169.619 162.283 164.68 1 134.73 ? H4 I3P 3002 D 1 
HETATM 29 H H5 I3P . . . L 3 170.927 162.786 167.093 1 134.73 ? H5 I3P 3002 D 1 
HETATM 30 H H6 I3P . . . L 3 169.771 160.237 166.658 1 134.73 ? H6 I3P 3002 D 1 
HETATM 31 H HO2 I3P . . . L 3 166.524 163.213 168.361 1 134.73 ? HO2 I3P 3002 D 1 
HETATM 32 H HO3 I3P . . . L 3 166.871 161.672 165.092 1 134.73 ? HO3 I3P 3002 D 1 
HETATM 33 H HO6 I3P . . . L 3 171.316 159.671 167.826 1 134.73 ? HO6 I3P 3002 D 1 
#
_model_server_stats.io_time_ms              161 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    439 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           33 
#