data_6DR0 # _model_server_result.job_id fncH7rhM6AFIQB5zCaQKYA _model_server_result.datetime_utc '2024-10-19 03:51:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dr0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2702}' # _entry.id 6DR0 # _exptl.entry_id 6DR0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 420.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DR0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DR0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc2 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc3 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 B SG CYS 2538 B CYS 2538 1_555 G ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc6 B SG CYS 2541 B CYS 2541 1_555 G ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc7 B NE2 HIS 2558 B HIS 2558 1_555 G ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc8 B ND1 HIS 2563 B HIS 2563 1_555 G ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc9 C SG CYS 2538 C CYS 2538 1_555 I ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc10 C SG CYS 2541 C CYS 2541 1_555 I ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc11 C NE2 HIS 2558 C HIS 2558 1_555 I ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc12 C ND1 HIS 2563 C HIS 2563 1_555 I ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc13 D SG CYS 2538 D CYS 2538 1_555 K ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc14 D SG CYS 2541 D CYS 2541 1_555 K ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc15 D NE2 HIS 2558 D HIS 2558 1_555 K ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc16 D ND1 HIS 2563 D HIS 2563 1_555 K ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DR0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 2701 3000 ZN ZN . F 3 I3P A 1 2702 3002 I3P I3P . G 2 ZN B 1 2701 3000 ZN ZN . H 3 I3P B 1 2702 3002 I3P I3P . I 2 ZN C 1 2701 3000 ZN ZN . J 3 I3P C 1 2702 3002 I3P I3P . K 2 ZN D 1 2701 3000 ZN ZN . L 3 I3P D 1 2702 3002 I3P I3P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . F 3 257.319 168.677 167.145 1 141.27 ? C1 I3P 2702 A 1 HETATM 2 C C2 I3P . . . F 3 256.251 167.824 166.449 1 141.27 ? C2 I3P 2702 A 1 HETATM 3 C C3 I3P . . . F 3 256.396 167.835 164.923 1 141.27 ? C3 I3P 2702 A 1 HETATM 4 C C4 I3P . . . F 3 256.23 169.244 164.344 1 141.27 ? C4 I3P 2702 A 1 HETATM 5 C C5 I3P . . . F 3 256.72 170.333 165.302 1 141.27 ? C5 I3P 2702 A 1 HETATM 6 C C6 I3P . . . F 3 257.806 169.834 166.261 1 141.27 ? C6 I3P 2702 A 1 HETATM 7 O O1 I3P . . . F 3 258.414 167.857 167.465 1 141.27 ? O1 I3P 2702 A 1 HETATM 8 O O2 I3P . . . F 3 256.364 166.496 166.901 1 141.27 ? O2 I3P 2702 A 1 HETATM 9 O O3 I3P . . . F 3 257.669 167.344 164.58 1 141.27 ? O3 I3P 2702 A 1 HETATM 10 O O4 I3P . . . F 3 254.869 169.469 164.079 1 141.27 ? O4 I3P 2702 A 1 HETATM 11 O O5 I3P . . . F 3 257.247 171.386 164.538 1 141.27 ? O5 I3P 2702 A 1 HETATM 12 O O6 I3P . . . F 3 258.2 170.901 167.088 1 141.27 ? O6 I3P 2702 A 1 HETATM 13 P P1 I3P . . . F 3 258.523 167.254 168.994 1 141.27 ? P1 I3P 2702 A 1 HETATM 14 O O11 I3P . . . F 3 259.804 166.465 169.131 1 141.27 ? O11 I3P 2702 A 1 HETATM 15 O O12 I3P . . . F 3 258.519 168.39 169.988 1 141.27 ? O12 I3P 2702 A 1 HETATM 16 O O13 I3P . . . F 3 257.345 166.347 169.259 1 141.27 ? O13 I3P 2702 A 1 HETATM 17 P P4 I3P . . . F 3 254.448 169.931 162.556 1 141.27 ? P4 I3P 2702 A 1 HETATM 18 O O41 I3P . . . F 3 254.463 168.728 161.645 1 141.27 ? O41 I3P 2702 A 1 HETATM 19 O O42 I3P . . . F 3 255.436 170.957 162.055 1 141.27 ? O42 I3P 2702 A 1 HETATM 20 O O43 I3P . . . F 3 253.063 170.532 162.578 1 141.27 ? O43 I3P 2702 A 1 HETATM 21 P P5 I3P . . . F 3 256.93 172.921 165.032 1 141.27 ? P5 I3P 2702 A 1 HETATM 22 O O51 I3P . . . F 3 257.804 173.887 164.27 1 141.27 ? O51 I3P 2702 A 1 HETATM 23 O O52 I3P . . . F 3 255.478 173.24 164.77 1 141.27 ? O52 I3P 2702 A 1 HETATM 24 O O53 I3P . . . F 3 257.213 173.032 166.511 1 141.27 ? O53 I3P 2702 A 1 HETATM 25 H H1 I3P . . . F 3 256.945 169.043 167.962 1 141.27 ? H1 I3P 2702 A 1 HETATM 26 H H2 I3P . . . F 3 255.375 168.168 166.683 1 141.27 ? H2 I3P 2702 A 1 HETATM 27 H H3 I3P . . . F 3 255.717 167.257 164.54 1 141.27 ? H3 I3P 2702 A 1 HETATM 28 H H4 I3P . . . F 3 256.732 169.305 163.516 1 141.27 ? H4 I3P 2702 A 1 HETATM 29 H H5 I3P . . . F 3 255.967 170.658 165.82 1 141.27 ? H5 I3P 2702 A 1 HETATM 30 H H6 I3P . . . F 3 258.569 169.533 165.743 1 141.27 ? H6 I3P 2702 A 1 HETATM 31 H HO2 I3P . . . F 3 255.591 166.147 166.95 1 141.27 ? HO2 I3P 2702 A 1 HETATM 32 H HO3 I3P . . . F 3 257.602 166.828 163.908 1 141.27 ? HO3 I3P 2702 A 1 HETATM 33 H HO6 I3P . . . F 3 259.046 170.895 167.175 1 141.27 ? HO6 I3P 2702 A 1 # _model_server_stats.io_time_ms 247 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 212 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #