data_6DR8 # _model_server_result.job_id 2pN6gva45FjetLDjKko2hQ _model_server_result.datetime_utc '2024-11-23 23:48:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":410}' # _entry.id 6DR8 # _exptl.entry_id 6DR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DR8 _cell.length_a 43.767 _cell.length_b 69.151 _cell.length_c 77.523 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 73 A HIS 116 1_555 G ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A ND1 HIS 75 A HIS 118 1_555 G ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc3 A OD2 ASP 77 A ASP 120 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc4 A NE2 HIS 78 A HIS 121 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc5 A NE2 HIS 149 A HIS 192 1_555 G ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc6 A NE2 HIS 211 A HIS 254 1_555 F ZN ZN . A ZN 405 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc7 C O1 PO4 . A PO4 402 1_555 F ZN ZN . A ZN 405 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc8 C O1 PO4 . A PO4 402 1_555 F ZN ZN . A ZN 405 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc9 C O3 PO4 . A PO4 402 1_555 F ZN ZN . A ZN 405 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc10 C O3 PO4 . A PO4 402 1_555 F ZN ZN . A ZN 405 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc11 C O2 PO4 . A PO4 402 1_555 G ZN ZN . A ZN 406 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc12 C O2 PO4 . A PO4 402 1_555 G ZN ZN . A ZN 406 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.965 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 238 n n C1 C2 PGE sing 239 n n C1 H1 PGE sing 240 n n C1 H12 PGE sing 241 n n O1 HO1 PGE sing 242 n n C2 O2 PGE sing 243 n n C2 H2 PGE sing 244 n n C2 H22 PGE sing 245 n n O2 C3 PGE sing 246 n n C3 C4 PGE sing 247 n n C3 H3 PGE sing 248 n n C3 H32 PGE sing 249 n n C4 O3 PGE sing 250 n n C4 H4 PGE sing 251 n n C4 H42 PGE sing 252 n n O4 C6 PGE sing 253 n n O4 HO4 PGE sing 254 n n C6 C5 PGE sing 255 n n C6 H6 PGE sing 256 n n C6 H62 PGE sing 257 n n C5 O3 PGE sing 258 n n C5 H5 PGE sing 259 n n C5 H52 PGE sing 260 n n # _atom_sites.entry_id 6DR8 _atom_sites.fract_transf_matrix[1][1] 0.022848 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 401 7 PO4 PO4 . C 2 PO4 A 1 402 9 PO4 PO4 . D 2 PO4 A 1 403 10 PO4 PO4 . E 2 PO4 A 1 404 11 PO4 PO4 . F 3 ZN A 1 405 6 ZN ZN . G 3 ZN A 1 406 7 ZN ZN . H 4 1KA A 1 407 1 1KA 1KA . I 4 1KA A 1 408 2 1KA 1KA . J 5 PGE A 1 409 3 PGE PGE . K 5 PGE A 1 410 4 PGE PGE . L 5 PGE A 1 411 6 PGE PGE . M 6 HOH A 1 501 172 HOH HOH . M 6 HOH A 2 502 122 HOH HOH . M 6 HOH A 3 503 195 HOH HOH . M 6 HOH A 4 504 59 HOH HOH . M 6 HOH A 5 505 123 HOH HOH . M 6 HOH A 6 506 43 HOH HOH . M 6 HOH A 7 507 102 HOH HOH . M 6 HOH A 8 508 179 HOH HOH . M 6 HOH A 9 509 115 HOH HOH . M 6 HOH A 10 510 71 HOH HOH . M 6 HOH A 11 511 17 HOH HOH . M 6 HOH A 12 512 53 HOH HOH . M 6 HOH A 13 513 141 HOH HOH . M 6 HOH A 14 514 117 HOH HOH . M 6 HOH A 15 515 152 HOH HOH . M 6 HOH A 16 516 56 HOH HOH . M 6 HOH A 17 517 194 HOH HOH . M 6 HOH A 18 518 131 HOH HOH . M 6 HOH A 19 519 182 HOH HOH . M 6 HOH A 20 520 132 HOH HOH . M 6 HOH A 21 521 49 HOH HOH . M 6 HOH A 22 522 7 HOH HOH . M 6 HOH A 23 523 103 HOH HOH . M 6 HOH A 24 524 60 HOH HOH . M 6 HOH A 25 525 4 HOH HOH . M 6 HOH A 26 526 14 HOH HOH . M 6 HOH A 27 527 39 HOH HOH . M 6 HOH A 28 528 12 HOH HOH . M 6 HOH A 29 529 156 HOH HOH . M 6 HOH A 30 530 2 HOH HOH . M 6 HOH A 31 531 8 HOH HOH . M 6 HOH A 32 532 13 HOH HOH . M 6 HOH A 33 533 88 HOH HOH . M 6 HOH A 34 534 120 HOH HOH . M 6 HOH A 35 535 52 HOH HOH . M 6 HOH A 36 536 78 HOH HOH . M 6 HOH A 37 537 46 HOH HOH . M 6 HOH A 38 538 72 HOH HOH . M 6 HOH A 39 539 114 HOH HOH . M 6 HOH A 40 540 55 HOH HOH . M 6 HOH A 41 541 85 HOH HOH . M 6 HOH A 42 542 27 HOH HOH . M 6 HOH A 43 543 101 HOH HOH . M 6 HOH A 44 544 196 HOH HOH . M 6 HOH A 45 545 178 HOH HOH . M 6 HOH A 46 546 29 HOH HOH . M 6 HOH A 47 547 9 HOH HOH . M 6 HOH A 48 548 40 HOH HOH . M 6 HOH A 49 549 108 HOH HOH . M 6 HOH A 50 550 5 HOH HOH . M 6 HOH A 51 551 158 HOH HOH . M 6 HOH A 52 552 124 HOH HOH . M 6 HOH A 53 553 24 HOH HOH . M 6 HOH A 54 554 15 HOH HOH . M 6 HOH A 55 555 18 HOH HOH . M 6 HOH A 56 556 125 HOH HOH . M 6 HOH A 57 557 76 HOH HOH . M 6 HOH A 58 558 91 HOH HOH . M 6 HOH A 59 559 165 HOH HOH . M 6 HOH A 60 560 50 HOH HOH . M 6 HOH A 61 561 153 HOH HOH . M 6 HOH A 62 562 134 HOH HOH . M 6 HOH A 63 563 37 HOH HOH . M 6 HOH A 64 564 69 HOH HOH . M 6 HOH A 65 565 94 HOH HOH . M 6 HOH A 66 566 140 HOH HOH . M 6 HOH A 67 567 83 HOH HOH . M 6 HOH A 68 568 48 HOH HOH . M 6 HOH A 69 569 23 HOH HOH . M 6 HOH A 70 570 77 HOH HOH . M 6 HOH A 71 571 16 HOH HOH . M 6 HOH A 72 572 79 HOH HOH . M 6 HOH A 73 573 20 HOH HOH . M 6 HOH A 74 574 10 HOH HOH . M 6 HOH A 75 575 97 HOH HOH . M 6 HOH A 76 576 3 HOH HOH . M 6 HOH A 77 577 95 HOH HOH . M 6 HOH A 78 578 67 HOH HOH . M 6 HOH A 79 579 30 HOH HOH . M 6 HOH A 80 580 166 HOH HOH . M 6 HOH A 81 581 31 HOH HOH . M 6 HOH A 82 582 6 HOH HOH . M 6 HOH A 83 583 116 HOH HOH . M 6 HOH A 84 584 139 HOH HOH . M 6 HOH A 85 585 96 HOH HOH . M 6 HOH A 86 586 57 HOH HOH . M 6 HOH A 87 587 181 HOH HOH . M 6 HOH A 88 588 189 HOH HOH . M 6 HOH A 89 589 44 HOH HOH . M 6 HOH A 90 590 1 HOH HOH . M 6 HOH A 91 591 34 HOH HOH . M 6 HOH A 92 592 80 HOH HOH . M 6 HOH A 93 593 11 HOH HOH . M 6 HOH A 94 594 81 HOH HOH . M 6 HOH A 95 595 73 HOH HOH . M 6 HOH A 96 596 107 HOH HOH . M 6 HOH A 97 597 68 HOH HOH . M 6 HOH A 98 598 163 HOH HOH . M 6 HOH A 99 599 70 HOH HOH . M 6 HOH A 100 600 25 HOH HOH . M 6 HOH A 101 601 42 HOH HOH . M 6 HOH A 102 602 47 HOH HOH . M 6 HOH A 103 603 110 HOH HOH . M 6 HOH A 104 604 41 HOH HOH . M 6 HOH A 105 605 33 HOH HOH . M 6 HOH A 106 606 190 HOH HOH . M 6 HOH A 107 607 22 HOH HOH . M 6 HOH A 108 608 99 HOH HOH . M 6 HOH A 109 609 187 HOH HOH . M 6 HOH A 110 610 35 HOH HOH . M 6 HOH A 111 611 26 HOH HOH . M 6 HOH A 112 612 183 HOH HOH . M 6 HOH A 113 613 86 HOH HOH . M 6 HOH A 114 614 19 HOH HOH . M 6 HOH A 115 615 51 HOH HOH . M 6 HOH A 116 616 160 HOH HOH . M 6 HOH A 117 617 126 HOH HOH . M 6 HOH A 118 618 21 HOH HOH . M 6 HOH A 119 619 38 HOH HOH . M 6 HOH A 120 620 66 HOH HOH . M 6 HOH A 121 621 112 HOH HOH . M 6 HOH A 122 622 65 HOH HOH . M 6 HOH A 123 623 32 HOH HOH . M 6 HOH A 124 624 36 HOH HOH . M 6 HOH A 125 625 75 HOH HOH . M 6 HOH A 126 626 74 HOH HOH . M 6 HOH A 127 627 113 HOH HOH . M 6 HOH A 128 628 58 HOH HOH . M 6 HOH A 129 629 63 HOH HOH . M 6 HOH A 130 630 155 HOH HOH . M 6 HOH A 131 631 169 HOH HOH . M 6 HOH A 132 632 185 HOH HOH . M 6 HOH A 133 633 90 HOH HOH . M 6 HOH A 134 634 129 HOH HOH . M 6 HOH A 135 635 28 HOH HOH . M 6 HOH A 136 636 170 HOH HOH . M 6 HOH A 137 637 184 HOH HOH . M 6 HOH A 138 638 54 HOH HOH . M 6 HOH A 139 639 98 HOH HOH . M 6 HOH A 140 640 119 HOH HOH . M 6 HOH A 141 641 62 HOH HOH . M 6 HOH A 142 642 192 HOH HOH . M 6 HOH A 143 643 87 HOH HOH . M 6 HOH A 144 644 82 HOH HOH . M 6 HOH A 145 645 154 HOH HOH . M 6 HOH A 146 646 146 HOH HOH . M 6 HOH A 147 647 175 HOH HOH . M 6 HOH A 148 648 171 HOH HOH . M 6 HOH A 149 649 84 HOH HOH . M 6 HOH A 150 650 137 HOH HOH . M 6 HOH A 151 651 45 HOH HOH . M 6 HOH A 152 652 149 HOH HOH . M 6 HOH A 153 653 104 HOH HOH . M 6 HOH A 154 654 64 HOH HOH . M 6 HOH A 155 655 150 HOH HOH . M 6 HOH A 156 656 147 HOH HOH . M 6 HOH A 157 657 135 HOH HOH . M 6 HOH A 158 658 161 HOH HOH . M 6 HOH A 159 659 93 HOH HOH . M 6 HOH A 160 660 186 HOH HOH . M 6 HOH A 161 661 100 HOH HOH . M 6 HOH A 162 662 168 HOH HOH . M 6 HOH A 163 663 127 HOH HOH . M 6 HOH A 164 664 151 HOH HOH . M 6 HOH A 165 665 128 HOH HOH . M 6 HOH A 166 666 61 HOH HOH . M 6 HOH A 167 667 157 HOH HOH . M 6 HOH A 168 668 180 HOH HOH . M 6 HOH A 169 669 191 HOH HOH . M 6 HOH A 170 670 89 HOH HOH . M 6 HOH A 171 671 92 HOH HOH . M 6 HOH A 172 672 143 HOH HOH . M 6 HOH A 173 673 121 HOH HOH . M 6 HOH A 174 674 188 HOH HOH . M 6 HOH A 175 675 111 HOH HOH . M 6 HOH A 176 676 174 HOH HOH . M 6 HOH A 177 677 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . K 5 -8.615 0.143 2.183 1 47.84 ? C1 PGE 410 A 1 HETATM 2 O O1 PGE . . . K 5 -9.929 0.261 1.717 1 31.89 ? O1 PGE 410 A 1 HETATM 3 C C2 PGE . . . K 5 -8.6 -0.882 3.313 1 44.77 ? C2 PGE 410 A 1 HETATM 4 O O2 PGE . . . K 5 -7.286 -1.251 3.615 1 43.13 ? O2 PGE 410 A 1 HETATM 5 C C3 PGE . . . K 5 -7.132 -1.89 4.85 1 39.26 ? C3 PGE 410 A 1 HETATM 6 C C4 PGE . . . K 5 -6.771 -3.353 4.628 1 49.2 ? C4 PGE 410 A 1 HETATM 7 O O4 PGE . . . K 5 -8.765 -7.621 4.307 1 74.45 ? O4 PGE 410 A 1 HETATM 8 C C6 PGE . . . K 5 -9.003 -6.241 4.322 1 49.7 ? C6 PGE 410 A 1 HETATM 9 C C5 PGE . . . K 5 -7.684 -5.501 4.514 1 47.06 ? C5 PGE 410 A 1 HETATM 10 O O3 PGE . . . K 5 -7.934 -4.125 4.551 1 49.05 ? O3 PGE 410 A 1 HETATM 11 H H1 PGE . . . K 5 -8.031 -0.152 1.467 1 57.41 ? H1 PGE 410 A 1 HETATM 12 H H12 PGE . . . K 5 -8.304 0.999 2.517 1 57.41 ? H12 PGE 410 A 1 HETATM 13 H HO1 PGE . . . K 5 -10.077 1.066 1.488 1 38.27 ? HO1 PGE 410 A 1 HETATM 14 H H2 PGE . . . K 5 -9.021 -0.508 4.103 1 53.72 ? H2 PGE 410 A 1 HETATM 15 H H22 PGE . . . K 5 -9.094 -1.67 3.039 1 53.72 ? H22 PGE 410 A 1 HETATM 16 H H3 PGE . . . K 5 -6.41 -1.46 5.334 1 47.11 ? H3 PGE 410 A 1 HETATM 17 H H32 PGE . . . K 5 -7.95 -1.82 5.367 1 47.11 ? H32 PGE 410 A 1 HETATM 18 H H4 PGE . . . K 5 -6.264 -3.445 3.806 1 59.04 ? H4 PGE 410 A 1 HETATM 19 H H42 PGE . . . K 5 -6.229 -3.671 5.367 1 59.04 ? H42 PGE 410 A 1 HETATM 20 H HO4 PGE . . . K 5 -9.431 -8.02 3.96 1 89.34 ? HO4 PGE 410 A 1 HETATM 21 H H6 PGE . . . K 5 -9.604 -6.024 5.052 1 59.64 ? H6 PGE 410 A 1 HETATM 22 H H62 PGE . . . K 5 -9.405 -5.972 3.482 1 59.64 ? H62 PGE 410 A 1 HETATM 23 H H5 PGE . . . K 5 -7.274 -5.778 5.349 1 56.47 ? H5 PGE 410 A 1 HETATM 24 H H52 PGE . . . K 5 -7.088 -5.703 3.777 1 56.47 ? H52 PGE 410 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 24 #