data_6DRC
#
_model_server_result.job_id            YlT1PHdMSfKNKAFStSJglw 
_model_server_result.datetime_utc      '2024-10-19 03:56:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6drc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":3002}' 
#
_entry.id    6DRC 
#
_exptl.entry_id    6DRC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              420.096 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DRC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DRC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
? 3 N N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc1 A O ARG 743 A ARG 743 1_555 H CA CA . A CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc2 A O GLU 1122 A GLU 1122 1_555 H CA CA . A CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc3 A OE2 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc4 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc5 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc6 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc7 A O THR 2581 A THR 2581 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc8 B O ARG 743 B ARG 743 1_555 L CA CA . B CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc9 B O GLU 1122 B GLU 1122 1_555 L CA CA . B CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc10 B OE2 GLU 1946 B GLU 1946 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc11 B SG CYS 2541 B CYS 2541 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc12 B NE2 HIS 2558 B HIS 2558 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc13 B ND1 HIS 2563 B HIS 2563 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc14 B O THR 2581 B THR 2581 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc15 C O ARG 743 C ARG 743 1_555 P CA CA . C CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc16 C O GLU 1122 C GLU 1122 1_555 P CA CA . C CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? 
metalc ? metalc17 C OE2 GLU 1946 C GLU 1946 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc18 C SG CYS 2541 C CYS 2541 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc19 C NE2 HIS 2558 C HIS 2558 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc20 C ND1 HIS 2563 C HIS 2563 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc21 C O THR 2581 C THR 2581 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc22 D O ARG 743 D ARG 743 1_555 T CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc23 D O GLU 1122 D GLU 1122 1_555 T CA CA . D CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? 
metalc ? metalc24 D OE2 GLU 1946 D GLU 1946 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc25 D SG CYS 2541 D CYS 2541 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc26 D NE2 HIS 2558 D HIS 2558 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc27 D ND1 HIS 2563 D HIS 2563 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc28 D O THR 2581 D THR 2581 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
#
_chem_comp.formula           'C6 H15 O15 P3' 
_chem_comp.formula_weight    420.096 
_chem_comp.id                I3P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 I3P sing 150 n n 
C1 C6 I3P sing 151 n n 
C1 O1 I3P sing 152 n n 
C1 H1 I3P sing 153 n n 
C2 C3 I3P sing 154 n n 
C2 O2 I3P sing 155 n n 
C2 H2 I3P sing 156 n n 
C3 C4 I3P sing 157 n n 
C3 O3 I3P sing 158 n n 
C3 H3 I3P sing 159 n n 
C4 C5 I3P sing 160 n n 
C4 O4 I3P sing 161 n n 
C4 H4 I3P sing 162 n n 
C5 C6 I3P sing 163 n n 
C5 O5 I3P sing 164 n n 
C5 H5 I3P sing 165 n n 
C6 O6 I3P sing 166 n n 
C6 H6 I3P sing 167 n n 
O1 P1 I3P sing 168 n n 
O2 HO2 I3P sing 169 n n 
O3 HO3 I3P sing 170 n n 
O4 P4 I3P sing 171 n n 
O5 P5 I3P sing 172 n n 
O6 HO6 I3P sing 173 n n 
P1 O11 I3P doub 174 n n 
P1 O12 I3P sing 175 n n 
P1 O13 I3P sing 176 n n 
O12 HO12 I3P sing 177 n n 
O13 HO13 I3P sing 178 n n 
P4 O41 I3P doub 179 n n 
P4 O42 I3P sing 180 n n 
P4 O43 I3P sing 181 n n 
O42 HO42 I3P sing 182 n n 
O43 HO43 I3P sing 183 n n 
P5 O51 I3P doub 184 n n 
P5 O52 I3P sing 185 n n 
P5 O53 I3P sing 186 n n 
O52 HO52 I3P sing 187 n n 
O53 HO53 I3P sing 188 n n 
#
_atom_sites.entry_id                     6DRC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 3001 3001 ZN ZN . 
F 3 I3P A 1 3002 3002 I3P I3P . 
G 4 CA A 1 3003 3003 CA CA . 
H 4 CA A 1 3004 3004 CA CA . 
I 2 ZN B 1 3001 3001 ZN ZN . 
J 3 I3P B 1 3002 3002 I3P I3P . 
K 4 CA B 1 3003 3003 CA CA . 
L 4 CA B 1 3004 3004 CA CA . 
M 2 ZN C 1 3001 3001 ZN ZN . 
N 3 I3P C 1 3002 3002 I3P I3P . 
O 4 CA C 1 3003 3003 CA CA . 
P 4 CA C 1 3004 3004 CA CA . 
Q 2 ZN D 1 3001 3001 ZN ZN . 
R 3 I3P D 1 3002 3002 I3P I3P . 
S 4 CA D 1 3003 3003 CA CA . 
T 4 CA D 1 3004 3004 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 I3P . . . J 3 229.028 281.866 172.515 1 329.97 ? C1 I3P 3002 B 1 
HETATM 2 C C2 I3P . . . J 3 230.191 280.893 172.272 1 329.97 ? C2 I3P 3002 B 1 
HETATM 3 C C3 I3P . . . J 3 230.45 280.634 170.783 1 329.97 ? C3 I3P 3002 B 1 
HETATM 4 C C4 I3P . . . J 3 229.224 280.045 170.069 1 329.97 ? C4 I3P 3002 B 1 
HETATM 5 C C5 I3P . . . J 3 227.898 280.596 170.61 1 329.97 ? C5 I3P 3002 B 1 
HETATM 6 C C6 I3P . . . J 3 228.059 281.942 171.325 1 329.97 ? C6 I3P 3002 B 1 
HETATM 7 O O1 I3P . . . J 3 229.553 283.149 172.75 1 329.97 ? O1 I3P 3002 B 1 
HETATM 8 O O2 I3P . . . J 3 231.358 281.435 172.843 1 329.97 ? O2 I3P 3002 B 1 
HETATM 9 O O3 I3P . . . J 3 230.808 281.844 170.16 1 329.97 ? O3 I3P 3002 B 1 
HETATM 10 O O4 I3P . . . J 3 229.229 278.649 170.239 1 329.97 ? O4 I3P 3002 B 1 
HETATM 11 O O5 I3P . . . J 3 227.015 280.769 169.528 1 329.97 ? O5 I3P 3002 B 1 
HETATM 12 O O6 I3P . . . J 3 226.801 282.356 171.799 1 329.97 ? O6 I3P 3002 B 1 
HETATM 13 P P1 I3P . . . J 3 229.459 283.768 174.274 1 329.97 ? P1 I3P 3002 B 1 
HETATM 14 O O11 I3P . . . J 3 229.825 285.233 174.245 1 329.97 ? O11 I3P 3002 B 1 
HETATM 15 O O12 I3P . . . J 3 228.05 283.612 174.794 1 329.97 ? O12 I3P 3002 B 1 
HETATM 16 O O13 I3P . . . J 3 230.414 283.028 175.179 1 329.97 ? O13 I3P 3002 B 1 
HETATM 17 P P4 I3P . . . J 3 228.825 277.696 168.957 1 329.97 ? P4 I3P 3002 B 1 
HETATM 18 O O41 I3P . . . J 3 229.932 277.728 167.931 1 329.97 ? O41 I3P 3002 B 1 
HETATM 19 O O42 I3P . . . J 3 227.547 278.205 168.335 1 329.97 ? O42 I3P 3002 B 1 
HETATM 20 O O43 I3P . . . J 3 228.621 276.277 169.431 1 329.97 ? O43 I3P 3002 B 1 
HETATM 21 P P5 I3P . . . J 3 225.415 280.449 169.758 1 329.97 ? P5 I3P 3002 B 1 
HETATM 22 O O51 I3P . . . J 3 224.589 281.381 168.905 1 329.97 ? O51 I3P 3002 B 1 
HETATM 23 O O52 I3P . . . J 3 225.126 279.02 169.367 1 329.97 ? O52 I3P 3002 B 1 
HETATM 24 O O53 I3P . . . J 3 225.063 280.653 171.212 1 329.97 ? O53 I3P 3002 B 1 
HETATM 25 H H1 I3P . . . J 3 228.537 281.575 173.299 1 329.97 ? H1 I3P 3002 B 1 
HETATM 26 H H2 I3P . . . J 3 229.987 280.049 172.705 1 329.97 ? H2 I3P 3002 B 1 
HETATM 27 H H3 I3P . . . J 3 231.187 280.008 170.702 1 329.97 ? H3 I3P 3002 B 1 
HETATM 28 H H4 I3P . . . J 3 229.284 280.251 169.123 1 329.97 ? H4 I3P 3002 B 1 
HETATM 29 H H5 I3P . . . J 3 227.523 279.952 171.231 1 329.97 ? H5 I3P 3002 B 1 
HETATM 30 H H6 I3P . . . J 3 228.391 282.597 170.691 1 329.97 ? H6 I3P 3002 B 1 
HETATM 31 H HO2 I3P . . . J 3 231.873 280.805 173.088 1 329.97 ? HO2 I3P 3002 B 1 
HETATM 32 H HO3 I3P . . . J 3 231.543 281.741 169.746 1 329.97 ? HO3 I3P 3002 B 1 
HETATM 33 H HO6 I3P . . . J 3 226.706 283.189 171.66 1 329.97 ? HO6 I3P 3002 B 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    166 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           33 
#