data_6DRG # _model_server_result.job_id JlRiOD_EYCEnB7fVuapQFw _model_server_result.datetime_utc '2024-11-02 20:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6drg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6DRG # _exptl.entry_id 6DRG _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 502.752 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(4-{2-[(4-cyclohexylbutyl)(cyclohexylcarbamoyl)amino]ethyl}phenyl)sulfanyl]-2-methylpropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H46 N2 O3 S' _chem_comp.formula_weight 502.752 _chem_comp.id 2VN _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(4-{2-[(4-cyclohexylbutyl)(cyclohexylcarbamoyl)amino]ethyl}phenyl)sulfanyl]-2-methylpropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 2VN sing 1 n n C10 C11 2VN sing 2 n n C14 C15 2VN sing 3 n n C14 C13 2VN sing 4 n n N1 C2 2VN sing 5 n n N1 C7 2VN sing 6 n n C9 N2 2VN sing 7 n n O3 C27 2VN doub 8 n n C3 C2 2VN sing 9 n n C3 C4 2VN sing 10 n n C11 C12 2VN sing 11 n n C15 C16 2VN sing 12 n n C2 C1 2VN sing 13 n n O2 C27 2VN sing 14 n n C27 C26 2VN sing 15 n n C13 C12 2VN sing 16 n n C13 C18 2VN sing 17 n n C7 O1 2VN doub 18 n n C7 N2 2VN sing 19 n n C29 C26 2VN sing 20 n n C28 C26 2VN sing 21 n n N2 C8 2VN sing 22 n n C26 S1 2VN sing 23 n n C4 C55 2VN sing 24 n n C16 C17 2VN sing 25 n n C18 C17 2VN sing 26 n n C1 C6 2VN sing 27 n n C8 C19 2VN sing 28 n n C55 C6 2VN sing 29 n n S1 C23 2VN sing 30 n n C22 C23 2VN doub 31 n y C22 C21 2VN sing 32 n y C23 C24 2VN sing 33 n y C21 C20 2VN doub 34 n y C24 C25 2VN doub 35 n y C20 C25 2VN sing 36 n y C20 C19 2VN sing 37 n n C1 H2 2VN sing 38 n n C1 H1 2VN sing 39 n n C10 H18 2VN sing 40 n n C10 H17 2VN sing 41 n n C11 H20 2VN sing 42 n n C11 H19 2VN sing 43 n n C12 H22 2VN sing 44 n n C12 H21 2VN sing 45 n n C13 H23 2VN sing 46 n n C14 H24 2VN sing 47 n n C14 H25 2VN sing 48 n n C15 H26 2VN sing 49 n n C15 H27 2VN sing 50 n n C16 H28 2VN sing 51 n n C16 H29 2VN sing 52 n n C17 H31 2VN sing 53 n n C17 H30 2VN sing 54 n n C18 H32 2VN sing 55 n n C18 H33 2VN sing 56 n n C19 H35 2VN sing 57 n n C19 H34 2VN sing 58 n n C2 H3 2VN sing 59 n n C21 HK6 2VN sing 60 n n C22 HL7 2VN sing 61 n n C24 HL8 2VN sing 62 n n C25 HK9 2VN sing 63 n n C28 HJ2 2VN sing 64 n n C28 HJ1 2VN sing 65 n n C28 HJ0 2VN sing 66 n n C29 HJ4 2VN sing 67 n n C29 HJ5 2VN sing 68 n n C29 HJ3 2VN sing 69 n n C3 H4 2VN sing 70 n n C3 H5 2VN sing 71 n n C4 H7 2VN sing 72 n n C4 H6 2VN sing 73 n n C55 H9 2VN sing 74 n n C55 H8 2VN sing 75 n n C6 H11 2VN sing 76 n n C6 H10 2VN sing 77 n n C8 H14 2VN sing 78 n n C8 H13 2VN sing 79 n n C9 H16 2VN sing 80 n n C9 H15 2VN sing 81 n n N1 H12 2VN sing 82 n n O2 H36 2VN sing 83 n n # _atom_sites.entry_id 6DRG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 2VN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 176 _pdbx_nonpoly_scheme.pdb_mon_id 2VN _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 2VN . . . B 2 1.641 -6.684 0.388 1 12.53 ? C26 2VN 201 A 1 HETATM 2 C C1 2VN . . . B 2 0.801 4.879 2.477 1 73.12 ? C1 2VN 201 A 1 HETATM 3 C C10 2VN . . . B 2 1.72 4.059 -2.017 1 53.53 ? C10 2VN 201 A 1 HETATM 4 C C11 2VN . . . B 2 3.099 3.37 -2.065 1 22.03 ? C11 2VN 201 A 1 HETATM 5 C C12 2VN . . . B 2 4.135 4.089 -1.187 1 41.11 ? C12 2VN 201 A 1 HETATM 6 C C13 2VN . . . B 2 4.052 3.677 0.301 1 74.32 ? C13 2VN 201 A 1 HETATM 7 C C14 2VN . . . B 2 4.519 4.794 1.263 1 35.41 ? C14 2VN 201 A 1 HETATM 8 C C15 2VN . . . B 2 4.375 4.413 2.762 1 72.52 ? C15 2VN 201 A 1 HETATM 9 C C16 2VN . . . B 2 4.306 2.891 3.02 1 44.23 ? C16 2VN 201 A 1 HETATM 10 C C17 2VN . . . B 2 5.222 2.142 2.041 1 45.23 ? C17 2VN 201 A 1 HETATM 11 C C18 2VN . . . B 2 4.808 2.345 0.57 1 10.25 ? C18 2VN 201 A 1 HETATM 12 C C19 2VN . . . B 2 1.795 0.199 -0.509 1 74.01 ? C19 2VN 201 A 1 HETATM 13 C C2 2VN . . . B 2 -0.537 4.563 1.76 1 14.23 ? C2 2VN 201 A 1 HETATM 14 C C20 2VN . . . B 2 1.569 -1.202 0.018 1 42.14 ? C20 2VN 201 A 1 HETATM 15 C C21 2VN . . . B 2 2.576 -2.149 -0.146 1 23.4 ? C21 2VN 201 A 1 HETATM 16 C C22 2VN . . . B 2 2.391 -3.437 0.333 1 12.54 ? C22 2VN 201 A 1 HETATM 17 C C23 2VN . . . B 2 1.206 -3.777 0.976 1 33.43 ? C23 2VN 201 A 1 HETATM 18 C C24 2VN . . . B 2 0.207 -2.828 1.169 1 20.25 ? C24 2VN 201 A 1 HETATM 19 C C25 2VN . . . B 2 0.39 -1.535 0.696 1 23.33 ? C25 2VN 201 A 1 HETATM 20 C C27 2VN . . . B 2 1.489 -6.229 -1.092 1 13.2 ? C27 2VN 201 A 1 HETATM 21 C C28 2VN . . . B 2 0.796 -7.956 0.539 1 12.1 ? C28 2VN 201 A 1 HETATM 22 C C29 2VN . . . B 2 3.12 -7.005 0.718 1 1.22 ? C29 2VN 201 A 1 HETATM 23 C C3 2VN . . . B 2 -1.545 3.906 2.737 1 64.31 ? C3 2VN 201 A 1 HETATM 24 C C4 2VN . . . B 2 -1.876 4.801 3.944 1 14.22 ? C4 2VN 201 A 1 HETATM 25 C C55 2VN . . . B 2 -0.67 5.636 4.432 1 50.3 ? C55 2VN 201 A 1 HETATM 26 C C6 2VN . . . B 2 0.69 5.051 4.008 1 51.23 ? C6 2VN 201 A 1 HETATM 27 C C7 2VN . . . B 2 -0.052 2.586 0.302 1 11.14 ? C7 2VN 201 A 1 HETATM 28 C C8 2VN . . . B 2 0.585 0.798 -1.263 1 51.5 ? C8 2VN 201 A 1 HETATM 29 C C9 2VN . . . B 2 0.497 3.128 -2.095 1 15.23 ? C9 2VN 201 A 1 HETATM 30 N N2 2VN . . . B 2 0.346 2.216 -0.949 1 32.33 ? N2 2VN 201 A 1 HETATM 31 N N1 2VN . . . B 2 -0.357 3.89 0.47 1 22.24 ? N1 2VN 201 A 1 HETATM 32 O O2 2VN . . . B 2 0.554 -5.456 -1.402 1 12.21 ? O2 2VN 201 A 1 HETATM 33 O O1 2VN . . . B 2 -0.129 1.779 1.23 1 52.24 ? O1 2VN 201 A 1 HETATM 34 O O3 2VN . . . B 2 2.277 -6.717 -1.931 1 2.51 -1 O3 2VN 201 A 1 HETATM 35 S S1 2VN . . . B 2 0.921 -5.43 1.529 1 23.21 ? S1 2VN 201 A 1 HETATM 36 H H2 2VN . . . B 2 1.516 4.08 2.288 1 0 ? H2 2VN 201 A 1 HETATM 37 H H1 2VN . . . B 2 1.238 5.777 2.034 1 0 ? H1 2VN 201 A 1 HETATM 38 H H18 2VN . . . B 2 1.684 4.745 -2.856 1 0 ? H18 2VN 201 A 1 HETATM 39 H H17 2VN . . . B 2 1.634 4.688 -1.131 1 0 ? H17 2VN 201 A 1 HETATM 40 H H20 2VN . . . B 2 3.035 2.325 -1.776 1 0 ? H20 2VN 201 A 1 HETATM 41 H H19 2VN . . . B 2 3.451 3.357 -3.096 1 0 ? H19 2VN 201 A 1 HETATM 42 H H22 2VN . . . B 2 5.142 3.912 -1.568 1 0 ? H22 2VN 201 A 1 HETATM 43 H H21 2VN . . . B 2 3.976 5.16 -1.294 1 0 ? H21 2VN 201 A 1 HETATM 44 H H23 2VN . . . B 2 3.001 3.511 0.542 1 0 ? H23 2VN 201 A 1 HETATM 45 H H24 2VN . . . B 2 3.978 5.721 1.068 1 0 ? H24 2VN 201 A 1 HETATM 46 H H25 2VN . . . B 2 5.567 5.005 1.045 1 0 ? H25 2VN 201 A 1 HETATM 47 H H26 2VN . . . B 2 3.496 4.888 3.192 1 0 ? H26 2VN 201 A 1 HETATM 48 H H27 2VN . . . B 2 5.217 4.831 3.313 1 0 ? H27 2VN 201 A 1 HETATM 49 H H28 2VN . . . B 2 3.283 2.533 2.894 1 0 ? H28 2VN 201 A 1 HETATM 50 H H29 2VN . . . B 2 4.576 2.671 4.053 1 0 ? H29 2VN 201 A 1 HETATM 51 H H31 2VN . . . B 2 6.225 2.54 2.17 1 0 ? H31 2VN 201 A 1 HETATM 52 H H30 2VN . . . B 2 5.289 1.08 2.269 1 0 ? H30 2VN 201 A 1 HETATM 53 H H32 2VN . . . B 2 5.707 2.278 -0.044 1 0 ? H32 2VN 201 A 1 HETATM 54 H H33 2VN . . . B 2 4.185 1.511 0.254 1 0 ? H33 2VN 201 A 1 HETATM 55 H H35 2VN . . . B 2 2.069 0.798 0.359 1 0 ? H35 2VN 201 A 1 HETATM 56 H H34 2VN . . . B 2 2.661 0.213 -1.171 1 0 ? H34 2VN 201 A 1 HETATM 57 H H3 2VN . . . B 2 -0.978 5.519 1.473 1 0 ? H3 2VN 201 A 1 HETATM 58 H HK6 2VN . . . B 2 3.499 -1.894 -0.645 1 0 ? HK6 2VN 201 A 1 HETATM 59 H HL7 2VN . . . B 2 3.162 -4.17 0.178 1 0 ? HL7 2VN 201 A 1 HETATM 60 H HL8 2VN . . . B 2 -0.713 -3.093 1.668 1 0 ? HL8 2VN 201 A 1 HETATM 61 H HK9 2VN . . . B 2 -0.388 -0.804 0.856 1 0 ? HK9 2VN 201 A 1 HETATM 62 H HJ2 2VN . . . B 2 1.157 -8.772 -0.09 1 0 ? HJ2 2VN 201 A 1 HETATM 63 H HJ1 2VN . . . B 2 -0.256 -7.789 0.297 1 0 ? HJ1 2VN 201 A 1 HETATM 64 H HJ0 2VN . . . B 2 0.834 -8.284 1.572 1 0 ? HJ0 2VN 201 A 1 HETATM 65 H HJ4 2VN . . . B 2 3.457 -7.915 0.223 1 0 ? HJ4 2VN 201 A 1 HETATM 66 H HJ5 2VN . . . B 2 3.806 -6.215 0.418 1 0 ? HJ5 2VN 201 A 1 HETATM 67 H HJ3 2VN . . . B 2 3.248 -7.152 1.789 1 0 ? HJ3 2VN 201 A 1 HETATM 68 H H4 2VN . . . B 2 -1.096 2.997 3.122 1 0 ? H4 2VN 201 A 1 HETATM 69 H H5 2VN . . . B 2 -2.451 3.581 2.233 1 0 ? H5 2VN 201 A 1 HETATM 70 H H7 2VN . . . B 2 -2.253 4.174 4.754 1 0 ? H7 2VN 201 A 1 HETATM 71 H H6 2VN . . . B 2 -2.696 5.467 3.679 1 0 ? H6 2VN 201 A 1 HETATM 72 H H9 2VN . . . B 2 -0.718 5.737 5.514 1 0 ? H9 2VN 201 A 1 HETATM 73 H H8 2VN . . . B 2 -0.743 6.645 4.026 1 0 ? H8 2VN 201 A 1 HETATM 74 H H11 2VN . . . B 2 0.821 4.082 4.491 1 0 ? H11 2VN 201 A 1 HETATM 75 H H10 2VN . . . B 2 1.509 5.675 4.361 1 0 ? H10 2VN 201 A 1 HETATM 76 H H14 2VN . . . B 2 -0.336 0.265 -1.025 1 0 ? H14 2VN 201 A 1 HETATM 77 H H13 2VN . . . B 2 0.727 0.644 -2.332 1 0 ? H13 2VN 201 A 1 HETATM 78 H H16 2VN . . . B 2 0.556 2.555 -3.016 1 0 ? H16 2VN 201 A 1 HETATM 79 H H15 2VN . . . B 2 -0.417 3.713 -2.193 1 0 ? H15 2VN 201 A 1 HETATM 80 H H12 2VN . . . B 2 -0.283 4.495 -0.335 1 0 ? H12 2VN 201 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 2639 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 80 #