data_6DRJ
#
_model_server_result.job_id            z9Kzy3c2wlqrPwWM9eFAeA 
_model_server_result.datetime_utc      '2024-12-02 05:43:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6drj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":2001}' 
#
_entry.id    6DRJ 
#
_exptl.entry_id    6DRJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DRJ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DRJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 1011 A CYS 1012 1_555 A SG CYS 1023 A CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf2 B SG CYS 1011 B CYS 1012 1_555 B SG CYS 1023 B CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 C SG CYS 1011 C CYS 1012 1_555 C SG CYS 1023 C CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf4 D SG CYS 1011 D CYS 1012 1_555 D SG CYS 1023 D CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc1 A OE1 GLU 856 A GLU 857 1_555 F CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc2 A OE2 GLU 856 A GLU 857 1_555 F CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc3 A OE1 GLN 859 A GLN 860 1_555 F CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc4 A OD1 ASN 882 A ASN 883 1_555 F CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc5 A OE2 GLU 1087 A GLU 1088 1_555 F CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? 
metalc ? metalc6 B OE1 GLU 856 B GLU 857 1_555 H CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc7 B OE2 GLU 856 B GLU 857 1_555 H CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc8 B OE1 GLN 859 B GLN 860 1_555 H CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc9 B OD1 ASN 882 B ASN 883 1_555 H CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? 
metalc ? metalc10 B OE2 GLU 1087 B GLU 1088 1_555 H CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? 
metalc ? metalc11 C OE1 GLU 856 C GLU 857 1_555 J CA CA . C CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc12 C OE2 GLU 856 C GLU 857 1_555 J CA CA . C CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc13 C OE1 GLN 859 C GLN 860 1_555 J CA CA . C CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc14 C OD1 ASN 882 C ASN 883 1_555 J CA CA . C CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc15 C OE2 GLU 1087 C GLU 1088 1_555 J CA CA . C CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? 
metalc ? metalc16 D OE1 GLU 856 D GLU 857 1_555 L CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc17 D OE2 GLU 856 D GLU 857 1_555 L CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc18 D OE1 GLN 859 D GLN 860 1_555 L CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc19 D OD1 ASN 882 D ASN 883 1_555 L CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc20 D OE2 GLU 1087 D GLU 1088 1_555 L CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     6DRJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 APR A 1 2001 2001 APR APR . 
F 3 CA A 1 2002 2002 CA CA . 
G 2 APR B 1 2001 2001 APR APR . 
H 3 CA B 1 2002 2002 CA CA . 
I 2 APR C 1 2001 2001 APR APR . 
J 3 CA C 1 2002 2002 CA CA . 
K 2 APR D 1 2001 2001 APR APR . 
L 3 CA D 1 2002 2002 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . I 2 210.733 148.443 124.258 1 87.18 ? N1 APR 2001 C 1 
HETATM 2 C C2 APR . . . I 2 211.167 149.7 124.475 1 87.18 ? C2 APR 2001 C 1 
HETATM 3 N N3 APR . . . I 2 211.152 150.665 123.538 1 87.18 ? N3 APR 2001 C 1 
HETATM 4 C C4 APR . . . I 2 210.687 150.417 122.29 1 87.18 ? C4 APR 2001 C 1 
HETATM 5 C C5 APR . . . I 2 210.194 149.067 121.977 1 87.18 ? C5 APR 2001 C 1 
HETATM 6 C C6 APR . . . I 2 210.242 148.057 123.061 1 87.18 ? C6 APR 2001 C 1 
HETATM 7 N N6 APR . . . I 2 209.81 146.789 122.856 1 87.18 ? N6 APR 2001 C 1 
HETATM 8 N N7 APR . . . I 2 209.796 149.092 120.691 1 87.18 ? N7 APR 2001 C 1 
HETATM 9 C C8 APR . . . I 2 210.014 150.348 120.222 1 87.18 ? C8 APR 2001 C 1 
HETATM 10 N N9 APR . . . I 2 210.543 151.137 121.175 1 87.18 ? N9 APR 2001 C 1 
HETATM 11 C C1' APR . . . I 2 210.909 152.567 121.012 1 87.18 ? C1' APR 2001 C 1 
HETATM 12 C C2' APR . . . I 2 211.536 152.782 119.642 1 87.18 ? C2' APR 2001 C 1 
HETATM 13 O O2' APR . . . I 2 212.895 153.21 119.794 1 87.18 ? O2' APR 2001 C 1 
HETATM 14 C C3' APR . . . I 2 210.667 153.814 118.936 1 87.18 ? C3' APR 2001 C 1 
HETATM 15 O O3' APR . . . I 2 211.391 154.999 118.579 1 87.18 ? O3' APR 2001 C 1 
HETATM 16 O O4' APR . . . I 2 209.734 153.378 121.089 1 87.18 ? O4' APR 2001 C 1 
HETATM 17 C C4' APR . . . I 2 209.554 154.168 119.911 1 87.18 ? C4' APR 2001 C 1 
HETATM 18 C C5' APR . . . I 2 208.181 153.892 119.311 1 87.18 ? C5' APR 2001 C 1 
HETATM 19 O O5' APR . . . I 2 207.222 153.78 120.36 1 87.18 ? O5' APR 2001 C 1 
HETATM 20 P PA APR . . . I 2 205.698 153.373 120.038 1 87.18 ? PA APR 2001 C 1 
HETATM 21 O O1A APR . . . I 2 204.801 154.094 121.015 1 87.18 ? O1A APR 2001 C 1 
HETATM 22 O O2A APR . . . I 2 205.473 153.525 118.553 1 87.18 ? O2A APR 2001 C 1 
HETATM 23 O O3A APR . . . I 2 205.674 151.803 120.395 1 87.18 ? O3A APR 2001 C 1 
HETATM 24 P PB APR . . . I 2 205.662 150.698 119.223 1 87.18 ? PB APR 2001 C 1 
HETATM 25 O O1B APR . . . I 2 206.76 151.035 118.244 1 87.18 ? O1B APR 2001 C 1 
HETATM 26 O O2B APR . . . I 2 204.241 150.542 118.735 1 87.18 ? O2B APR 2001 C 1 
HETATM 27 O O5D APR . . . I 2 206.077 149.352 120.002 1 87.18 ? O5D APR 2001 C 1 
HETATM 28 C C5D APR . . . I 2 205.212 148.784 120.984 1 87.18 ? C5D APR 2001 C 1 
HETATM 29 O O4D APR . . . I 2 205.07 147.077 122.689 1 87.18 ? O4D APR 2001 C 1 
HETATM 30 O O1D APR . . . I 2 203.552 145.371 122.189 1 87.18 ? O1D APR 2001 C 1 
HETATM 31 C C1D APR . . . I 2 204.923 145.673 122.464 1 87.18 ? C1D APR 2001 C 1 
HETATM 32 O O2D APR . . . I 2 206.744 144.308 121.651 1 87.18 ? O2D APR 2001 C 1 
HETATM 33 C C2D APR . . . I 2 205.781 145.298 121.265 1 87.18 ? C2D APR 2001 C 1 
HETATM 34 O O3D APR . . . I 2 207.858 146.535 120.793 1 87.18 ? O3D APR 2001 C 1 
HETATM 35 C C3D APR . . . I 2 206.425 146.591 120.784 1 87.18 ? C3D APR 2001 C 1 
HETATM 36 C C4D APR . . . I 2 205.948 147.681 121.733 1 87.18 ? C4D APR 2001 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    64 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           36 
#