data_6DRJ # _model_server_result.job_id 8et-ql2FVMWu7pNoyC5_bA _model_server_result.datetime_utc '2024-12-02 05:29:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6drj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2002}' # _entry.id 6DRJ # _exptl.entry_id 6DRJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DRJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1011 A CYS 1012 1_555 A SG CYS 1023 A CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 B SG CYS 1011 B CYS 1012 1_555 B SG CYS 1023 B CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 C SG CYS 1011 C CYS 1012 1_555 C SG CYS 1023 C CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 D SG CYS 1011 D CYS 1012 1_555 D SG CYS 1023 D CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A OE1 GLU 856 A GLU 857 1_555 F CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc2 A OE2 GLU 856 A GLU 857 1_555 F CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc3 A OE1 GLN 859 A GLN 860 1_555 F CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc4 A OD1 ASN 882 A ASN 883 1_555 F CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc5 A OE2 GLU 1087 A GLU 1088 1_555 F CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? metalc ? metalc6 B OE1 GLU 856 B GLU 857 1_555 H CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc7 B OE2 GLU 856 B GLU 857 1_555 H CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc8 B OE1 GLN 859 B GLN 860 1_555 H CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc9 B OD1 ASN 882 B ASN 883 1_555 H CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc10 B OE2 GLU 1087 B GLU 1088 1_555 H CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc11 C OE1 GLU 856 C GLU 857 1_555 J CA CA . C CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc12 C OE2 GLU 856 C GLU 857 1_555 J CA CA . C CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc13 C OE1 GLN 859 C GLN 860 1_555 J CA CA . C CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc14 C OD1 ASN 882 C ASN 883 1_555 J CA CA . C CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc15 C OE2 GLU 1087 C GLU 1088 1_555 J CA CA . C CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? metalc ? metalc16 D OE1 GLU 856 D GLU 857 1_555 L CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc17 D OE2 GLU 856 D GLU 857 1_555 L CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc18 D OE1 GLN 859 D GLN 860 1_555 L CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc19 D OD1 ASN 882 D ASN 883 1_555 L CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc20 D OE2 GLU 1087 D GLU 1088 1_555 L CA CA . D CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DRJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 APR A 1 2001 2001 APR APR . F 3 CA A 1 2002 2002 CA CA . G 2 APR B 1 2001 2001 APR APR . H 3 CA B 1 2002 2002 CA CA . I 2 APR C 1 2001 2001 APR APR . J 3 CA C 1 2002 2002 CA CA . K 2 APR D 1 2001 2001 APR APR . L 3 CA D 1 2002 2002 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 158.103 _atom_site.Cartn_y 119.745 _atom_site.Cartn_z 190.971 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 105.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 2002 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 107 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #