data_6DRS # _model_server_result.job_id fk_GYzkfkHZ1vxONJrWY7g _model_server_result.datetime_utc '2024-10-19 20:25:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6drs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 6DRS # _exptl.entry_id 6DRS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6DRS _cell.length_a 77.72 _cell.length_b 77.72 _cell.length_c 120.63 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 280 n n PA O2A NAP sing 281 n n PA O5B NAP sing 282 n n PA O3 NAP sing 283 n n O2A HOA2 NAP sing 284 n n O5B C5B NAP sing 285 n n C5B C4B NAP sing 286 n n C5B H51A NAP sing 287 n n C5B H52A NAP sing 288 n n C4B O4B NAP sing 289 n n C4B C3B NAP sing 290 n n C4B H4B NAP sing 291 n n O4B C1B NAP sing 292 n n C3B O3B NAP sing 293 n n C3B C2B NAP sing 294 n n C3B H3B NAP sing 295 n n O3B HO3A NAP sing 296 n n C2B O2B NAP sing 297 n n C2B C1B NAP sing 298 n n C2B H2B NAP sing 299 n n O2B P2B NAP sing 300 n n C1B N9A NAP sing 301 n n C1B H1B NAP sing 302 n n N9A C8A NAP sing 303 n y N9A C4A NAP sing 304 n y C8A N7A NAP doub 305 n y C8A H8A NAP sing 306 n n N7A C5A NAP sing 307 n y C5A C6A NAP sing 308 n y C5A C4A NAP doub 309 n y C6A N6A NAP sing 310 n n C6A N1A NAP doub 311 n y N6A H61A NAP sing 312 n n N6A H62A NAP sing 313 n n N1A C2A NAP sing 314 n y C2A N3A NAP doub 315 n y C2A H2A NAP sing 316 n n N3A C4A NAP sing 317 n y O3 PN NAP sing 318 n n PN O1N NAP doub 319 n n PN O2N NAP sing 320 n n PN O5D NAP sing 321 n n O5D C5D NAP sing 322 n n C5D C4D NAP sing 323 n n C5D H51N NAP sing 324 n n C5D H52N NAP sing 325 n n C4D O4D NAP sing 326 n n C4D C3D NAP sing 327 n n C4D H4D NAP sing 328 n n O4D C1D NAP sing 329 n n C3D O3D NAP sing 330 n n C3D C2D NAP sing 331 n n C3D H3D NAP sing 332 n n O3D HO3N NAP sing 333 n n C2D O2D NAP sing 334 n n C2D C1D NAP sing 335 n n C2D H2D NAP sing 336 n n O2D HO2N NAP sing 337 n n C1D N1N NAP sing 338 n n C1D H1D NAP sing 339 n n N1N C2N NAP sing 340 n y N1N C6N NAP doub 341 n y C2N C3N NAP doub 342 n y C2N H2N NAP sing 343 n n C3N C7N NAP sing 344 n n C3N C4N NAP sing 345 n y C7N O7N NAP doub 346 n n C7N N7N NAP sing 347 n n N7N H71N NAP sing 348 n n N7N H72N NAP sing 349 n n C4N C5N NAP doub 350 n y C4N H4N NAP sing 351 n n C5N C6N NAP sing 352 n y C5N H5N NAP sing 353 n n C6N H6N NAP sing 354 n n P2B O1X NAP doub 355 n n P2B O2X NAP sing 356 n n P2B O3X NAP sing 357 n n O2X HOP2 NAP sing 358 n n O3X HOP3 NAP sing 359 n n # _atom_sites.entry_id 6DRS _atom_sites.fract_transf_matrix[1][1] 0.012867 _atom_sites.fract_transf_matrix[1][2] 0.007429 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 2 SO4 A 1 302 2 SO4 SO4 . D 2 SO4 A 1 303 3 SO4 SO4 . E 2 SO4 A 1 304 4 SO4 SO4 . F 2 SO4 A 1 305 5 SO4 SO4 . G 3 H8A A 1 306 1 H8A RAC . H 4 NAP A 1 307 1 NAP NAP . I 5 HOH A 1 401 81 HOH HOH . I 5 HOH A 2 402 83 HOH HOH . I 5 HOH A 3 403 132 HOH HOH . I 5 HOH A 4 404 121 HOH HOH . I 5 HOH A 5 405 147 HOH HOH . I 5 HOH A 6 406 59 HOH HOH . I 5 HOH A 7 407 96 HOH HOH . I 5 HOH A 8 408 153 HOH HOH . I 5 HOH A 9 409 30 HOH HOH . I 5 HOH A 10 410 154 HOH HOH . I 5 HOH A 11 411 92 HOH HOH . I 5 HOH A 12 412 41 HOH HOH . I 5 HOH A 13 413 39 HOH HOH . I 5 HOH A 14 414 8 HOH HOH . I 5 HOH A 15 415 134 HOH HOH . I 5 HOH A 16 416 5 HOH HOH . I 5 HOH A 17 417 105 HOH HOH . I 5 HOH A 18 418 108 HOH HOH . I 5 HOH A 19 419 98 HOH HOH . I 5 HOH A 20 420 104 HOH HOH . I 5 HOH A 21 421 151 HOH HOH . I 5 HOH A 22 422 31 HOH HOH . I 5 HOH A 23 423 33 HOH HOH . I 5 HOH A 24 424 142 HOH HOH . I 5 HOH A 25 425 62 HOH HOH . I 5 HOH A 26 426 87 HOH HOH . I 5 HOH A 27 427 78 HOH HOH . I 5 HOH A 28 428 3 HOH HOH . I 5 HOH A 29 429 82 HOH HOH . I 5 HOH A 30 430 43 HOH HOH . I 5 HOH A 31 431 38 HOH HOH . I 5 HOH A 32 432 72 HOH HOH . I 5 HOH A 33 433 99 HOH HOH . I 5 HOH A 34 434 148 HOH HOH . I 5 HOH A 35 435 110 HOH HOH . I 5 HOH A 36 436 28 HOH HOH . I 5 HOH A 37 437 17 HOH HOH . I 5 HOH A 38 438 140 HOH HOH . I 5 HOH A 39 439 15 HOH HOH . I 5 HOH A 40 440 45 HOH HOH . I 5 HOH A 41 441 122 HOH HOH . I 5 HOH A 42 442 29 HOH HOH . I 5 HOH A 43 443 11 HOH HOH . I 5 HOH A 44 444 27 HOH HOH . I 5 HOH A 45 445 65 HOH HOH . I 5 HOH A 46 446 47 HOH HOH . I 5 HOH A 47 447 127 HOH HOH . I 5 HOH A 48 448 141 HOH HOH . I 5 HOH A 49 449 49 HOH HOH . I 5 HOH A 50 450 133 HOH HOH . I 5 HOH A 51 451 12 HOH HOH . I 5 HOH A 52 452 22 HOH HOH . I 5 HOH A 53 453 25 HOH HOH . I 5 HOH A 54 454 66 HOH HOH . I 5 HOH A 55 455 109 HOH HOH . I 5 HOH A 56 456 6 HOH HOH . I 5 HOH A 57 457 139 HOH HOH . I 5 HOH A 58 458 48 HOH HOH . I 5 HOH A 59 459 67 HOH HOH . I 5 HOH A 60 460 24 HOH HOH . I 5 HOH A 61 461 75 HOH HOH . I 5 HOH A 62 462 106 HOH HOH . I 5 HOH A 63 463 19 HOH HOH . I 5 HOH A 64 464 58 HOH HOH . I 5 HOH A 65 465 36 HOH HOH . I 5 HOH A 66 466 70 HOH HOH . I 5 HOH A 67 467 53 HOH HOH . I 5 HOH A 68 468 128 HOH HOH . I 5 HOH A 69 469 77 HOH HOH . I 5 HOH A 70 470 64 HOH HOH . I 5 HOH A 71 471 93 HOH HOH . I 5 HOH A 72 472 4 HOH HOH . I 5 HOH A 73 473 51 HOH HOH . I 5 HOH A 74 474 18 HOH HOH . I 5 HOH A 75 475 10 HOH HOH . I 5 HOH A 76 476 63 HOH HOH . I 5 HOH A 77 477 21 HOH HOH . I 5 HOH A 78 478 42 HOH HOH . I 5 HOH A 79 479 85 HOH HOH . I 5 HOH A 80 480 74 HOH HOH . I 5 HOH A 81 481 23 HOH HOH . I 5 HOH A 82 482 20 HOH HOH . I 5 HOH A 83 483 91 HOH HOH . I 5 HOH A 84 484 89 HOH HOH . I 5 HOH A 85 485 113 HOH HOH . I 5 HOH A 86 486 7 HOH HOH . I 5 HOH A 87 487 119 HOH HOH . I 5 HOH A 88 488 116 HOH HOH . I 5 HOH A 89 489 90 HOH HOH . I 5 HOH A 90 490 13 HOH HOH . I 5 HOH A 91 491 54 HOH HOH . I 5 HOH A 92 492 79 HOH HOH . I 5 HOH A 93 493 34 HOH HOH . I 5 HOH A 94 494 35 HOH HOH . I 5 HOH A 95 495 145 HOH HOH . I 5 HOH A 96 496 61 HOH HOH . I 5 HOH A 97 497 32 HOH HOH . I 5 HOH A 98 498 157 HOH HOH . I 5 HOH A 99 499 69 HOH HOH . I 5 HOH A 100 500 97 HOH HOH . I 5 HOH A 101 501 46 HOH HOH . I 5 HOH A 102 502 37 HOH HOH . I 5 HOH A 103 503 1 HOH HOH . I 5 HOH A 104 504 144 HOH HOH . I 5 HOH A 105 505 50 HOH HOH . I 5 HOH A 106 506 149 HOH HOH . I 5 HOH A 107 507 55 HOH HOH . I 5 HOH A 108 508 44 HOH HOH . I 5 HOH A 109 509 100 HOH HOH . I 5 HOH A 110 510 124 HOH HOH . I 5 HOH A 111 511 115 HOH HOH . I 5 HOH A 112 512 68 HOH HOH . I 5 HOH A 113 513 138 HOH HOH . I 5 HOH A 114 514 94 HOH HOH . I 5 HOH A 115 515 118 HOH HOH . I 5 HOH A 116 516 16 HOH HOH . I 5 HOH A 117 517 111 HOH HOH . I 5 HOH A 118 518 14 HOH HOH . I 5 HOH A 119 519 103 HOH HOH . I 5 HOH A 120 520 136 HOH HOH . I 5 HOH A 121 521 73 HOH HOH . I 5 HOH A 122 522 57 HOH HOH . I 5 HOH A 123 523 26 HOH HOH . I 5 HOH A 124 524 135 HOH HOH . I 5 HOH A 125 525 120 HOH HOH . I 5 HOH A 126 526 2 HOH HOH . I 5 HOH A 127 527 9 HOH HOH . I 5 HOH A 128 528 146 HOH HOH . I 5 HOH A 129 529 101 HOH HOH . I 5 HOH A 130 530 159 HOH HOH . I 5 HOH A 131 531 112 HOH HOH . I 5 HOH A 132 532 114 HOH HOH . I 5 HOH A 133 533 107 HOH HOH . I 5 HOH A 134 534 130 HOH HOH . I 5 HOH A 135 535 95 HOH HOH . I 5 HOH A 136 536 152 HOH HOH . I 5 HOH A 137 537 143 HOH HOH . I 5 HOH A 138 538 155 HOH HOH . I 5 HOH A 139 539 102 HOH HOH . I 5 HOH A 140 540 117 HOH HOH . I 5 HOH A 141 541 125 HOH HOH . I 5 HOH A 142 542 56 HOH HOH . I 5 HOH A 143 543 80 HOH HOH . I 5 HOH A 144 544 52 HOH HOH . I 5 HOH A 145 545 60 HOH HOH . I 5 HOH A 146 546 88 HOH HOH . I 5 HOH A 147 547 71 HOH HOH . I 5 HOH A 148 548 76 HOH HOH . I 5 HOH A 149 549 40 HOH HOH . I 5 HOH A 150 550 158 HOH HOH . I 5 HOH A 151 551 131 HOH HOH . I 5 HOH A 152 552 126 HOH HOH . I 5 HOH A 153 553 84 HOH HOH . I 5 HOH A 154 554 123 HOH HOH . I 5 HOH A 155 555 150 HOH HOH . I 5 HOH A 156 556 129 HOH HOH . I 5 HOH A 157 557 156 HOH HOH . I 5 HOH A 158 558 86 HOH HOH . I 5 HOH A 159 559 160 HOH HOH . I 5 HOH A 160 560 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . H 4 18.923 -14.238 3.084 1 16.47 ? PA NAP 307 A 1 HETATM 2 O O1A NAP . . . H 4 20.328 -14.238 2.551 1 15.94 ? O1A NAP 307 A 1 HETATM 3 O O2A NAP . . . H 4 17.728 -13.567 2.511 1 15.21 ? O2A NAP 307 A 1 HETATM 4 O O5B NAP . . . H 4 19.005 -13.82 4.652 1 19 ? O5B NAP 307 A 1 HETATM 5 C C5B NAP . . . H 4 17.916 -13.968 5.584 1 19.26 ? C5B NAP 307 A 1 HETATM 6 C C4B NAP . . . H 4 18.308 -13.133 6.785 1 20.89 ? C4B NAP 307 A 1 HETATM 7 O O4B NAP . . . H 4 18.365 -11.758 6.399 1 21.63 ? O4B NAP 307 A 1 HETATM 8 C C3B NAP . . . H 4 17.301 -13.164 7.925 1 22.19 ? C3B NAP 307 A 1 HETATM 9 O O3B NAP . . . H 4 17.54 -14.292 8.781 1 19.81 ? O3B NAP 307 A 1 HETATM 10 C C2B NAP . . . H 4 17.58 -11.843 8.618 1 21.97 ? C2B NAP 307 A 1 HETATM 11 O O2B NAP . . . H 4 18.824 -11.913 9.311 1 20.75 ? O2B NAP 307 A 1 HETATM 12 C C1B NAP . . . H 4 17.895 -10.913 7.461 1 23.77 ? C1B NAP 307 A 1 HETATM 13 N N9A NAP . . . H 4 16.695 -10.245 6.99 1 25.51 ? N9A NAP 307 A 1 HETATM 14 C C8A NAP . . . H 4 15.95 -10.768 6.003 1 27.71 ? C8A NAP 307 A 1 HETATM 15 N N7A NAP . . . H 4 14.899 -9.96 5.75 1 30.01 ? N7A NAP 307 A 1 HETATM 16 C C5A NAP . . . H 4 14.973 -8.896 6.579 1 29.89 ? C5A NAP 307 A 1 HETATM 17 C C6A NAP . . . H 4 14.159 -7.681 6.811 1 30.79 ? C6A NAP 307 A 1 HETATM 18 N N6A NAP . . . H 4 13.075 -7.501 6.044 1 33.72 ? N6A NAP 307 A 1 HETATM 19 N N1A NAP . . . H 4 14.522 -6.787 7.756 1 29.98 ? N1A NAP 307 A 1 HETATM 20 C C2A NAP . . . H 4 15.632 -7.02 8.48 1 29.09 ? C2A NAP 307 A 1 HETATM 21 N N3A NAP . . . H 4 16.422 -8.116 8.318 1 28.77 ? N3A NAP 307 A 1 HETATM 22 C C4A NAP . . . H 4 16.159 -9.088 7.407 1 27.35 ? C4A NAP 307 A 1 HETATM 23 O O3 NAP . . . H 4 18.61 -15.822 3.383 1 18.04 ? O3 NAP 307 A 1 HETATM 24 P PN NAP . . . H 4 17.848 -16.918 2.447 1 16.18 ? PN NAP 307 A 1 HETATM 25 O O1N NAP . . . H 4 16.697 -16.335 1.74 1 15.3 ? O1N NAP 307 A 1 HETATM 26 O O2N NAP . . . H 4 17.674 -18.07 3.412 1 17.71 ? O2N NAP 307 A 1 HETATM 27 O O5D NAP . . . H 4 18.989 -17.31 1.398 1 14.77 ? O5D NAP 307 A 1 HETATM 28 C C5D NAP . . . H 4 20.217 -17.842 1.829 1 13.49 ? C5D NAP 307 A 1 HETATM 29 C C4D NAP . . . H 4 20.445 -18.974 0.851 1 13.54 ? C4D NAP 307 A 1 HETATM 30 O O4D NAP . . . H 4 20.363 -18.44 -0.471 1 13.23 ? O4D NAP 307 A 1 HETATM 31 C C3D NAP . . . H 4 21.777 -19.676 0.968 1 13.46 ? C3D NAP 307 A 1 HETATM 32 O O3D NAP . . . H 4 21.544 -21.073 0.647 1 14.03 ? O3D NAP 307 A 1 HETATM 33 C C2D NAP . . . H 4 22.591 -19.007 -0.107 1 12.45 ? C2D NAP 307 A 1 HETATM 34 O O2D NAP . . . H 4 23.615 -19.861 -0.551 1 11.87 ? O2D NAP 307 A 1 HETATM 35 C C1D NAP . . . H 4 21.563 -18.748 -1.186 1 13.28 ? C1D NAP 307 A 1 HETATM 36 N N1N NAP . . . H 4 21.956 -17.648 -2.092 1 14.26 ? N1N NAP 307 A 1 HETATM 37 C C2N NAP . . . H 4 22.117 -17.938 -3.404 1 14.42 ? C2N NAP 307 A 1 HETATM 38 C C3N NAP . . . H 4 22.514 -16.955 -4.334 1 15.18 ? C3N NAP 307 A 1 HETATM 39 C C7N NAP . . . H 4 22.671 -17.315 -5.81 1 15.37 ? C7N NAP 307 A 1 HETATM 40 O O7N NAP . . . H 4 22.91 -16.444 -6.653 1 14.98 ? O7N NAP 307 A 1 HETATM 41 N N7N NAP . . . H 4 22.543 -18.608 -6.161 1 14.23 ? N7N NAP 307 A 1 HETATM 42 C C4N NAP . . . H 4 22.783 -15.657 -3.856 1 14.87 ? C4N NAP 307 A 1 HETATM 43 C C5N NAP . . . H 4 22.613 -15.399 -2.494 1 14.83 ? C5N NAP 307 A 1 HETATM 44 C C6N NAP . . . H 4 22.213 -16.41 -1.618 1 14.43 ? C6N NAP 307 A 1 HETATM 45 P P2B NAP . . . H 4 18.885 -12.234 10.887 1 20.56 ? P2B NAP 307 A 1 HETATM 46 O O1X NAP . . . H 4 18.423 -13.677 11.038 1 20.33 ? O1X NAP 307 A 1 HETATM 47 O O2X NAP . . . H 4 20.373 -12.187 11.169 1 19.19 ? O2X NAP 307 A 1 HETATM 48 O O3X NAP . . . H 4 17.921 -11.196 11.374 1 19.54 ? O3X NAP 307 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #