data_6DRT # _model_server_result.job_id fYTyMuxGdC7auLBGVkXW0Q _model_server_result.datetime_utc '2024-11-26 16:53:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6drt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1302}' # _entry.id 6DRT # _exptl.entry_id 6DRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DRT _cell.length_a 63.757 _cell.length_b 90.95 _cell.length_c 151.403 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 6DRT _atom_sites.fract_transf_matrix[1][1] 0.015685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 EDO A 1 1301 5 EDO EDO . H 3 EDO B 1 1301 2 EDO EDO . I 3 EDO B 1 1302 4 EDO EDO . J 3 EDO C 1 1301 3 EDO EDO . K 3 EDO C 1 1302 6 EDO EDO . L 3 EDO C 1 1303 7 EDO EDO . M 3 EDO C 1 1304 8 EDO EDO . N 4 HOH A 1 1401 210 HOH HOH . N 4 HOH A 2 1402 201 HOH HOH . N 4 HOH A 3 1403 174 HOH HOH . N 4 HOH A 4 1404 13 HOH HOH . N 4 HOH A 5 1405 273 HOH HOH . N 4 HOH A 6 1406 138 HOH HOH . N 4 HOH A 7 1407 151 HOH HOH . N 4 HOH A 8 1408 38 HOH HOH . N 4 HOH A 9 1409 177 HOH HOH . N 4 HOH A 10 1410 240 HOH HOH . N 4 HOH A 11 1411 120 HOH HOH . N 4 HOH A 12 1412 77 HOH HOH . N 4 HOH A 13 1413 276 HOH HOH . N 4 HOH A 14 1414 101 HOH HOH . N 4 HOH A 15 1415 172 HOH HOH . N 4 HOH A 16 1416 48 HOH HOH . N 4 HOH A 17 1417 89 HOH HOH . N 4 HOH A 18 1418 24 HOH HOH . N 4 HOH A 19 1419 60 HOH HOH . N 4 HOH A 20 1420 32 HOH HOH . N 4 HOH A 21 1421 4 HOH HOH . N 4 HOH A 22 1422 295 HOH HOH . N 4 HOH A 23 1423 116 HOH HOH . N 4 HOH A 24 1424 35 HOH HOH . N 4 HOH A 25 1425 218 HOH HOH . N 4 HOH A 26 1426 257 HOH HOH . N 4 HOH A 27 1427 252 HOH HOH . N 4 HOH A 28 1428 79 HOH HOH . N 4 HOH A 29 1429 84 HOH HOH . N 4 HOH A 30 1430 96 HOH HOH . N 4 HOH A 31 1431 5 HOH HOH . N 4 HOH A 32 1432 186 HOH HOH . N 4 HOH A 33 1433 103 HOH HOH . N 4 HOH A 34 1434 125 HOH HOH . N 4 HOH A 35 1435 57 HOH HOH . N 4 HOH A 36 1436 16 HOH HOH . N 4 HOH A 37 1437 56 HOH HOH . N 4 HOH A 38 1438 9 HOH HOH . N 4 HOH A 39 1439 10 HOH HOH . N 4 HOH A 40 1440 288 HOH HOH . N 4 HOH A 41 1441 2 HOH HOH . N 4 HOH A 42 1442 264 HOH HOH . N 4 HOH A 43 1443 160 HOH HOH . N 4 HOH A 44 1444 196 HOH HOH . N 4 HOH A 45 1445 150 HOH HOH . N 4 HOH A 46 1446 180 HOH HOH . N 4 HOH A 47 1447 41 HOH HOH . N 4 HOH A 48 1448 26 HOH HOH . N 4 HOH A 49 1449 86 HOH HOH . N 4 HOH A 50 1450 237 HOH HOH . N 4 HOH A 51 1451 106 HOH HOH . N 4 HOH A 52 1452 21 HOH HOH . N 4 HOH A 53 1453 66 HOH HOH . N 4 HOH A 54 1454 298 HOH HOH . N 4 HOH A 55 1455 248 HOH HOH . N 4 HOH A 56 1456 211 HOH HOH . N 4 HOH A 57 1457 119 HOH HOH . N 4 HOH A 58 1458 303 HOH HOH . N 4 HOH A 59 1459 107 HOH HOH . N 4 HOH A 60 1460 306 HOH HOH . N 4 HOH A 61 1461 243 HOH HOH . N 4 HOH A 62 1462 194 HOH HOH . N 4 HOH A 63 1463 6 HOH HOH . N 4 HOH A 64 1464 200 HOH HOH . N 4 HOH A 65 1465 27 HOH HOH . N 4 HOH A 66 1466 83 HOH HOH . N 4 HOH A 67 1467 268 HOH HOH . N 4 HOH A 68 1468 255 HOH HOH . N 4 HOH A 69 1469 266 HOH HOH . N 4 HOH A 70 1470 312 HOH HOH . N 4 HOH A 71 1471 265 HOH HOH . N 4 HOH A 72 1472 260 HOH HOH . N 4 HOH A 73 1473 85 HOH HOH . N 4 HOH A 74 1474 136 HOH HOH . N 4 HOH A 75 1475 247 HOH HOH . N 4 HOH A 76 1476 187 HOH HOH . N 4 HOH A 77 1477 229 HOH HOH . N 4 HOH A 78 1478 55 HOH HOH . N 4 HOH A 79 1479 304 HOH HOH . N 4 HOH A 80 1480 132 HOH HOH . N 4 HOH A 81 1481 293 HOH HOH . N 4 HOH A 82 1482 158 HOH HOH . N 4 HOH A 83 1483 133 HOH HOH . N 4 HOH A 84 1484 284 HOH HOH . N 4 HOH A 85 1485 215 HOH HOH . N 4 HOH A 86 1486 18 HOH HOH . N 4 HOH A 87 1487 95 HOH HOH . N 4 HOH A 88 1488 246 HOH HOH . N 4 HOH A 89 1489 129 HOH HOH . N 4 HOH A 90 1490 271 HOH HOH . N 4 HOH A 91 1491 72 HOH HOH . O 4 HOH B 1 1401 34 HOH HOH . O 4 HOH B 2 1402 182 HOH HOH . O 4 HOH B 3 1403 113 HOH HOH . O 4 HOH B 4 1404 176 HOH HOH . O 4 HOH B 5 1405 82 HOH HOH . O 4 HOH B 6 1406 19 HOH HOH . O 4 HOH B 7 1407 157 HOH HOH . O 4 HOH B 8 1408 58 HOH HOH . O 4 HOH B 9 1409 149 HOH HOH . O 4 HOH B 10 1410 148 HOH HOH . O 4 HOH B 11 1411 193 HOH HOH . O 4 HOH B 12 1412 108 HOH HOH . O 4 HOH B 13 1413 144 HOH HOH . O 4 HOH B 14 1414 51 HOH HOH . O 4 HOH B 15 1415 188 HOH HOH . O 4 HOH B 16 1416 256 HOH HOH . O 4 HOH B 17 1417 68 HOH HOH . O 4 HOH B 18 1418 139 HOH HOH . O 4 HOH B 19 1419 280 HOH HOH . O 4 HOH B 20 1420 224 HOH HOH . O 4 HOH B 21 1421 199 HOH HOH . O 4 HOH B 22 1422 189 HOH HOH . O 4 HOH B 23 1423 290 HOH HOH . O 4 HOH B 24 1424 28 HOH HOH . O 4 HOH B 25 1425 67 HOH HOH . O 4 HOH B 26 1426 162 HOH HOH . O 4 HOH B 27 1427 15 HOH HOH . O 4 HOH B 28 1428 117 HOH HOH . O 4 HOH B 29 1429 17 HOH HOH . O 4 HOH B 30 1430 45 HOH HOH . O 4 HOH B 31 1431 281 HOH HOH . O 4 HOH B 32 1432 65 HOH HOH . O 4 HOH B 33 1433 155 HOH HOH . O 4 HOH B 34 1434 238 HOH HOH . O 4 HOH B 35 1435 54 HOH HOH . O 4 HOH B 36 1436 274 HOH HOH . O 4 HOH B 37 1437 98 HOH HOH . O 4 HOH B 38 1438 167 HOH HOH . O 4 HOH B 39 1439 44 HOH HOH . O 4 HOH B 40 1440 263 HOH HOH . O 4 HOH B 41 1441 7 HOH HOH . O 4 HOH B 42 1442 29 HOH HOH . O 4 HOH B 43 1443 111 HOH HOH . O 4 HOH B 44 1444 212 HOH HOH . O 4 HOH B 45 1445 289 HOH HOH . O 4 HOH B 46 1446 115 HOH HOH . O 4 HOH B 47 1447 49 HOH HOH . O 4 HOH B 48 1448 183 HOH HOH . O 4 HOH B 49 1449 205 HOH HOH . O 4 HOH B 50 1450 43 HOH HOH . O 4 HOH B 51 1451 142 HOH HOH . O 4 HOH B 52 1452 74 HOH HOH . O 4 HOH B 53 1453 236 HOH HOH . O 4 HOH B 54 1454 217 HOH HOH . O 4 HOH B 55 1455 146 HOH HOH . O 4 HOH B 56 1456 191 HOH HOH . O 4 HOH B 57 1457 275 HOH HOH . O 4 HOH B 58 1458 242 HOH HOH . O 4 HOH B 59 1459 184 HOH HOH . O 4 HOH B 60 1460 135 HOH HOH . O 4 HOH B 61 1461 137 HOH HOH . O 4 HOH B 62 1462 213 HOH HOH . O 4 HOH B 63 1463 198 HOH HOH . O 4 HOH B 64 1464 23 HOH HOH . O 4 HOH B 65 1465 241 HOH HOH . O 4 HOH B 66 1466 297 HOH HOH . O 4 HOH B 67 1467 175 HOH HOH . O 4 HOH B 68 1468 181 HOH HOH . O 4 HOH B 69 1469 285 HOH HOH . O 4 HOH B 70 1470 208 HOH HOH . O 4 HOH B 71 1471 300 HOH HOH . O 4 HOH B 72 1472 190 HOH HOH . O 4 HOH B 73 1473 185 HOH HOH . O 4 HOH B 74 1474 123 HOH HOH . O 4 HOH B 75 1475 301 HOH HOH . O 4 HOH B 76 1476 76 HOH HOH . O 4 HOH B 77 1477 259 HOH HOH . O 4 HOH B 78 1478 302 HOH HOH . O 4 HOH B 79 1479 209 HOH HOH . O 4 HOH B 80 1480 80 HOH HOH . P 4 HOH C 1 1401 92 HOH HOH . P 4 HOH C 2 1402 14 HOH HOH . P 4 HOH C 3 1403 8 HOH HOH . P 4 HOH C 4 1404 272 HOH HOH . P 4 HOH C 5 1405 114 HOH HOH . P 4 HOH C 6 1406 202 HOH HOH . P 4 HOH C 7 1407 214 HOH HOH . P 4 HOH C 8 1408 307 HOH HOH . P 4 HOH C 9 1409 36 HOH HOH . P 4 HOH C 10 1410 105 HOH HOH . P 4 HOH C 11 1411 81 HOH HOH . P 4 HOH C 12 1412 143 HOH HOH . P 4 HOH C 13 1413 244 HOH HOH . P 4 HOH C 14 1414 192 HOH HOH . P 4 HOH C 15 1415 131 HOH HOH . P 4 HOH C 16 1416 37 HOH HOH . P 4 HOH C 17 1417 12 HOH HOH . P 4 HOH C 18 1418 94 HOH HOH . P 4 HOH C 19 1419 99 HOH HOH . P 4 HOH C 20 1420 230 HOH HOH . P 4 HOH C 21 1421 90 HOH HOH . P 4 HOH C 22 1422 59 HOH HOH . P 4 HOH C 23 1423 53 HOH HOH . P 4 HOH C 24 1424 207 HOH HOH . P 4 HOH C 25 1425 3 HOH HOH . P 4 HOH C 26 1426 147 HOH HOH . P 4 HOH C 27 1427 121 HOH HOH . P 4 HOH C 28 1428 100 HOH HOH . P 4 HOH C 29 1429 178 HOH HOH . P 4 HOH C 30 1430 222 HOH HOH . P 4 HOH C 31 1431 62 HOH HOH . P 4 HOH C 32 1432 234 HOH HOH . P 4 HOH C 33 1433 52 HOH HOH . P 4 HOH C 34 1434 126 HOH HOH . P 4 HOH C 35 1435 219 HOH HOH . P 4 HOH C 36 1436 91 HOH HOH . P 4 HOH C 37 1437 47 HOH HOH . P 4 HOH C 38 1438 63 HOH HOH . P 4 HOH C 39 1439 311 HOH HOH . P 4 HOH C 40 1440 140 HOH HOH . P 4 HOH C 41 1441 73 HOH HOH . P 4 HOH C 42 1442 216 HOH HOH . P 4 HOH C 43 1443 254 HOH HOH . P 4 HOH C 44 1444 46 HOH HOH . P 4 HOH C 45 1445 1 HOH HOH . P 4 HOH C 46 1446 31 HOH HOH . P 4 HOH C 47 1447 75 HOH HOH . P 4 HOH C 48 1448 220 HOH HOH . P 4 HOH C 49 1449 233 HOH HOH . P 4 HOH C 50 1450 20 HOH HOH . P 4 HOH C 51 1451 64 HOH HOH . P 4 HOH C 52 1452 269 HOH HOH . P 4 HOH C 53 1453 109 HOH HOH . P 4 HOH C 54 1454 292 HOH HOH . P 4 HOH C 55 1455 78 HOH HOH . P 4 HOH C 56 1456 251 HOH HOH . P 4 HOH C 57 1457 195 HOH HOH . P 4 HOH C 58 1458 61 HOH HOH . P 4 HOH C 59 1459 39 HOH HOH . P 4 HOH C 60 1460 164 HOH HOH . P 4 HOH C 61 1461 127 HOH HOH . P 4 HOH C 62 1462 159 HOH HOH . P 4 HOH C 63 1463 305 HOH HOH . P 4 HOH C 64 1464 11 HOH HOH . P 4 HOH C 65 1465 33 HOH HOH . P 4 HOH C 66 1466 22 HOH HOH . P 4 HOH C 67 1467 165 HOH HOH . P 4 HOH C 68 1468 170 HOH HOH . P 4 HOH C 69 1469 267 HOH HOH . P 4 HOH C 70 1470 102 HOH HOH . P 4 HOH C 71 1471 206 HOH HOH . P 4 HOH C 72 1472 245 HOH HOH . P 4 HOH C 73 1473 70 HOH HOH . P 4 HOH C 74 1474 223 HOH HOH . P 4 HOH C 75 1475 161 HOH HOH . P 4 HOH C 76 1476 228 HOH HOH . P 4 HOH C 77 1477 253 HOH HOH . P 4 HOH C 78 1478 50 HOH HOH . P 4 HOH C 79 1479 130 HOH HOH . P 4 HOH C 80 1480 25 HOH HOH . P 4 HOH C 81 1481 112 HOH HOH . P 4 HOH C 82 1482 30 HOH HOH . P 4 HOH C 83 1483 232 HOH HOH . P 4 HOH C 84 1484 156 HOH HOH . P 4 HOH C 85 1485 249 HOH HOH . P 4 HOH C 86 1486 122 HOH HOH . P 4 HOH C 87 1487 152 HOH HOH . P 4 HOH C 88 1488 173 HOH HOH . P 4 HOH C 89 1489 310 HOH HOH . P 4 HOH C 90 1490 258 HOH HOH . P 4 HOH C 91 1491 279 HOH HOH . P 4 HOH C 92 1492 239 HOH HOH . P 4 HOH C 93 1493 270 HOH HOH . P 4 HOH C 94 1494 42 HOH HOH . P 4 HOH C 95 1495 110 HOH HOH . P 4 HOH C 96 1496 71 HOH HOH . P 4 HOH C 97 1497 282 HOH HOH . P 4 HOH C 98 1498 227 HOH HOH . P 4 HOH C 99 1499 278 HOH HOH . P 4 HOH C 100 1500 262 HOH HOH . P 4 HOH C 101 1501 287 HOH HOH . P 4 HOH C 102 1502 166 HOH HOH . P 4 HOH C 103 1503 145 HOH HOH . P 4 HOH C 104 1504 291 HOH HOH . P 4 HOH C 105 1505 40 HOH HOH . P 4 HOH C 106 1506 154 HOH HOH . P 4 HOH C 107 1507 163 HOH HOH . P 4 HOH C 108 1508 309 HOH HOH . P 4 HOH C 109 1509 97 HOH HOH . P 4 HOH C 110 1510 153 HOH HOH . P 4 HOH C 111 1511 169 HOH HOH . P 4 HOH C 112 1512 179 HOH HOH . P 4 HOH C 113 1513 128 HOH HOH . P 4 HOH C 114 1514 294 HOH HOH . P 4 HOH C 115 1515 225 HOH HOH . P 4 HOH C 116 1516 197 HOH HOH . P 4 HOH C 117 1517 203 HOH HOH . P 4 HOH C 118 1518 93 HOH HOH . P 4 HOH C 119 1519 226 HOH HOH . P 4 HOH C 120 1520 296 HOH HOH . P 4 HOH C 121 1521 308 HOH HOH . P 4 HOH C 122 1522 87 HOH HOH . P 4 HOH C 123 1523 204 HOH HOH . P 4 HOH C 124 1524 124 HOH HOH . P 4 HOH C 125 1525 118 HOH HOH . P 4 HOH C 126 1526 69 HOH HOH . P 4 HOH C 127 1527 88 HOH HOH . P 4 HOH C 128 1528 299 HOH HOH . P 4 HOH C 129 1529 261 HOH HOH . P 4 HOH C 130 1530 168 HOH HOH . P 4 HOH C 131 1531 221 HOH HOH . P 4 HOH C 132 1532 283 HOH HOH . P 4 HOH C 133 1533 171 HOH HOH . P 4 HOH C 134 1534 231 HOH HOH . P 4 HOH C 135 1535 286 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 -3.954 -12.967 -18.124 1 74.38 ? C1 EDO 1302 B 1 HETATM 2 O O1 EDO . . . I 3 -4.197 -11.569 -18.32 1 73.42 ? O1 EDO 1302 B 1 HETATM 3 C C2 EDO . . . I 3 -5.281 -13.689 -17.93 1 78.88 ? C2 EDO 1302 B 1 HETATM 4 O O2 EDO . . . I 3 -5.047 -15.095 -17.789 1 82.02 ? O2 EDO 1302 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #