data_6DRX # _model_server_result.job_id vvKq6OOG6zJzy2e70Ujhwg _model_server_result.datetime_utc '2024-11-16 21:56:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6drx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 6DRX # _exptl.entry_id 6DRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DRX _cell.length_a 59.38 _cell.length_b 118.55 _cell.length_c 168.203 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 128 1_555 A SG CYS 172 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 356 A CYS 350 1_555 A SG CYS 359 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 368 n n C10 C9 OLC doub 369 n n C10 C11 OLC sing 370 n n C9 C8 OLC sing 371 n n C17 C16 OLC sing 372 z n C11 C12 OLC sing 373 n n C8 C7 OLC sing 374 n n C24 C22 OLC sing 375 n n C24 O25 OLC sing 376 n n C16 C15 OLC sing 377 n n C12 C13 OLC sing 378 n n C7 C6 OLC sing 379 n n C15 C14 OLC sing 380 n n C13 C14 OLC sing 381 n n C6 C5 OLC sing 382 n n C5 C4 OLC sing 383 n n C4 C3 OLC sing 384 n n C3 C2 OLC sing 385 n n C2 C1 OLC sing 386 n n C21 C22 OLC sing 387 n n C21 O20 OLC sing 388 n n C1 O19 OLC doub 389 n n C1 O20 OLC sing 390 n n C22 O23 OLC sing 391 n n C18 H18 OLC sing 392 n n C18 H18A OLC sing 393 n n C18 H18B OLC sing 394 n n C10 H10 OLC sing 395 n n C9 H9 OLC sing 396 n n C17 H17 OLC sing 397 n n C17 H17A OLC sing 398 n n C11 H11 OLC sing 399 n n C11 H11A OLC sing 400 n n C8 H8 OLC sing 401 n n C8 H8A OLC sing 402 n n C24 H24 OLC sing 403 n n C24 H24A OLC sing 404 n n C16 H16 OLC sing 405 n n C16 H16A OLC sing 406 n n C12 H12 OLC sing 407 n n C12 H12A OLC sing 408 n n C7 H7 OLC sing 409 n n C7 H7A OLC sing 410 n n C15 H15 OLC sing 411 n n C15 H15A OLC sing 412 n n C13 H13 OLC sing 413 n n C13 H13A OLC sing 414 n n C6 H6 OLC sing 415 n n C6 H6A OLC sing 416 n n C14 H14 OLC sing 417 n n C14 H14A OLC sing 418 n n C5 H5 OLC sing 419 n n C5 H5A OLC sing 420 n n C4 H4 OLC sing 421 n n C4 H4A OLC sing 422 n n C3 H3 OLC sing 423 n n C3 H3A OLC sing 424 n n C2 H2 OLC sing 425 n n C2 H2A OLC sing 426 n n C21 H21 OLC sing 427 n n C21 H21A OLC sing 428 n n C22 H22 OLC sing 429 n n O25 HO25 OLC sing 430 n n O23 HO23 OLC sing 431 n n # _atom_sites.entry_id 6DRX _atom_sites.fract_transf_matrix[1][1] 0.016841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H8G A 1 1201 1 H8G DRG . C 3 CLR A 1 1202 2003 CLR CLR . D 4 OLC A 1 1203 2004 OLC OLC . E 5 HOH A 1 1301 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . D 4 -39.541 -19.061 -1.576 1 82.02 ? C10 OLC 1203 A 1 HETATM 2 C C9 OLC . . . D 4 -39.881 -18.281 -2.599 1 81.31 ? C9 OLC 1203 A 1 HETATM 3 C C11 OLC . . . D 4 -38.818 -20.363 -1.825 1 83.11 ? C11 OLC 1203 A 1 HETATM 4 C C8 OLC . . . D 4 -39.554 -18.699 -4.012 1 81.31 ? C8 OLC 1203 A 1 HETATM 5 C C24 OLC . . . D 4 -34.204 -14.027 -12.893 1 89.17 ? C24 OLC 1203 A 1 HETATM 6 C C12 OLC . . . D 4 -37.416 -20.282 -1.231 1 84.27 ? C12 OLC 1203 A 1 HETATM 7 C C7 OLC . . . D 4 -40.291 -17.8 -4.998 1 81.04 ? C7 OLC 1203 A 1 HETATM 8 C C6 OLC . . . D 4 -40.229 -18.352 -6.418 1 81.12 ? C6 OLC 1203 A 1 HETATM 9 C C5 OLC . . . D 4 -38.808 -18.706 -6.847 1 80.55 ? C5 OLC 1203 A 1 HETATM 10 C C4 OLC . . . D 4 -37.91 -17.477 -6.922 1 80.31 ? C4 OLC 1203 A 1 HETATM 11 C C3 OLC . . . D 4 -36.633 -17.784 -7.694 1 80.16 ? C3 OLC 1203 A 1 HETATM 12 C C2 OLC . . . D 4 -35.576 -16.716 -7.443 1 82.04 ? C2 OLC 1203 A 1 HETATM 13 C C21 OLC . . . D 4 -34.297 -15.455 -10.855 1 87.13 ? C21 OLC 1203 A 1 HETATM 14 C C1 OLC . . . D 4 -34.688 -16.575 -8.657 1 84.52 ? C1 OLC 1203 A 1 HETATM 15 C C22 OLC . . . D 4 -35.085 -14.951 -12.059 1 89.43 ? C22 OLC 1203 A 1 HETATM 16 O O19 OLC . . . D 4 -33.533 -16.966 -8.632 1 85.8 ? O19 OLC 1203 A 1 HETATM 17 O O25 OLC . . . D 4 -34.925 -13.58 -14.046 1 88.6 ? O25 OLC 1203 A 1 HETATM 18 O O23 OLC . . . D 4 -35.496 -16.064 -12.861 1 91.67 ? O23 OLC 1203 A 1 HETATM 19 O O20 OLC . . . D 4 -35.2 -15.95 -9.867 1 86.47 ? O20 OLC 1203 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #