data_6DRY # _model_server_result.job_id NwJoWODbNbnLmforOBj71g _model_server_result.datetime_utc '2024-11-21 14:09:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dry # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 6DRY # _exptl.entry_id 6DRY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.431 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (8beta)-N-[(2S)-1-hydroxybutan-2-yl]-6-methyl-9,10-didehydroergoline-8-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DRY _cell.length_a 59.662 _cell.length_b 119.452 _cell.length_c 171.021 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 128 1_555 A SG CYS 172 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 357 A CYS 350 1_555 A SG CYS 360 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C20 H25 N3 O2' _chem_comp.formula_weight 339.431 _chem_comp.id H8D _chem_comp.mon_nstd_flag . _chem_comp.name (8beta)-N-[(2S)-1-hydroxybutan-2-yl]-6-methyl-9,10-didehydroergoline-8-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms methylergonovine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N1 H8D sing 206 n y C8 C7 H8D doub 207 n y N1 C1 H8D sing 208 n y C15 C7 H8D sing 209 n n C15 C11 H8D sing 210 n n C7 C3 H8D sing 211 n y C12 N2 H8D sing 212 n n C1 C3 H8D doub 213 n y C1 C4 H8D sing 214 n y C3 C6 H8D sing 215 n y C11 N2 H8D sing 216 n n C11 C9 H8D sing 217 n n N2 C13 H8D sing 218 n n C4 C5 H8D doub 219 n y C6 C9 H8D sing 220 n n C6 C2 H8D doub 221 n y C9 C10 H8D doub 222 n n C13 C14 H8D sing 223 n n C5 C2 H8D sing 224 n y C10 C14 H8D sing 225 n n C14 C16 H8D sing 226 n n C16 N3 H8D sing 227 n n C16 O1 H8D doub 228 n n N3 C19 H8D sing 229 n n C21 C20 H8D sing 230 n n C20 C19 H8D sing 231 n n C19 C22 H8D sing 232 n n C22 O2 H8D sing 233 n n C4 H1 H8D sing 234 n n C14 H2 H8D sing 235 n n C5 H3 H8D sing 236 n n C11 H4 H8D sing 237 n n C8 H5 H8D sing 238 n n C10 H7 H8D sing 239 n n C12 H9 H8D sing 240 n n C12 H10 H8D sing 241 n n C12 H11 H8D sing 242 n n C13 H12 H8D sing 243 n n C13 H13 H8D sing 244 n n N1 H14 H8D sing 245 n n N3 H16 H8D sing 246 n n C15 H17 H8D sing 247 n n C15 H18 H8D sing 248 n n C19 H19 H8D sing 249 n n C2 H20 H8D sing 250 n n C20 H21 H8D sing 251 n n C20 H22 H8D sing 252 n n C21 H23 H8D sing 253 n n C21 H24 H8D sing 254 n n C21 H25 H8D sing 255 n n C22 H26 H8D sing 256 n n C22 H27 H8D sing 257 n n O2 H28 H8D sing 258 n n # _atom_sites.entry_id 6DRY _atom_sites.fract_transf_matrix[1][1] 0.016761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H8D A 1 2001 2001 H8D DRG . C 3 CLR A 1 2002 2002 CLR CLR . D 4 OLA A 1 2003 2003 OLA OLA . E 5 OLC A 1 2004 2004 OLC OLC . F 6 PEG A 1 2005 2005 PEG PEG . G 7 PO4 A 1 2006 2006 PO4 PO4 . H 7 PO4 A 1 2007 2007 PO4 PO4 . I 8 HOH A 1 2101 2009 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 H8D . . . B 2 -26.39 -13.029 8.218 1 62.9 ? C4 H8D 2001 A 1 HETATM 2 C C14 H8D . . . B 2 -22.698 -18.023 9.927 1 65.1 ? C14 H8D 2001 A 1 HETATM 3 C C5 H8D . . . B 2 -26.156 -13.593 9.475 1 62.54 ? C5 H8D 2001 A 1 HETATM 4 C C6 H8D . . . B 2 -24.632 -15.145 8.439 1 70.58 ? C6 H8D 2001 A 1 HETATM 5 C C11 H8D . . . B 2 -23.744 -16.937 7.397 1 86.93 ? C11 H8D 2001 A 1 HETATM 6 C C7 H8D . . . B 2 -24.33 -14.986 6.217 1 71.4 ? C7 H8D 2001 A 1 HETATM 7 C C8 H8D . . . B 2 -24.824 -14.189 5.269 1 64.83 ? C8 H8D 2001 A 1 HETATM 8 C C9 H8D . . . B 2 -23.753 -16.221 8.598 1 78.94 ? C9 H8D 2001 A 1 HETATM 9 C C10 H8D . . . B 2 -23.457 -16.856 9.811 1 67.55 ? C10 H8D 2001 A 1 HETATM 10 C C12 H8D . . . B 2 -22.791 -18.789 6.311 1 59.51 ? C12 H8D 2001 A 1 HETATM 11 C C13 H8D . . . B 2 -22.957 -18.79 8.642 1 69.65 ? C13 H8D 2001 A 1 HETATM 12 N N1 H8D . . . B 2 -25.681 -13.312 5.828 1 69.65 ? N1 H8D 2001 A 1 HETATM 13 N N2 H8D . . . B 2 -22.703 -17.975 7.455 1 68.61 ? N2 H8D 2001 A 1 HETATM 14 C C3 H8D . . . B 2 -24.92 -14.542 7.295 1 70.1 ? C3 H8D 2001 A 1 HETATM 15 N N3 H8D . . . B 2 -21.822 -19.644 11.568 1 78.22 ? N3 H8D 2001 A 1 HETATM 16 C C1 H8D . . . B 2 -25.758 -13.526 7.152 1 71.54 ? C1 H8D 2001 A 1 HETATM 17 C C15 H8D . . . B 2 -23.439 -16.042 6.2 1 102.99 ? C15 H8D 2001 A 1 HETATM 18 C C16 H8D . . . B 2 -22.906 -18.908 11.147 1 67.49 ? C16 H8D 2001 A 1 HETATM 19 C C19 H8D . . . B 2 -21.896 -20.388 12.796 1 80.93 ? C19 H8D 2001 A 1 HETATM 20 C C2 H8D . . . B 2 -25.261 -14.67 9.59 1 57.41 ? C2 H8D 2001 A 1 HETATM 21 C C20 H8D . . . B 2 -21.625 -21.859 12.564 1 69.89 ? C20 H8D 2001 A 1 HETATM 22 C C21 H8D . . . B 2 -22.857 -22.526 11.957 1 58.46 ? C21 H8D 2001 A 1 HETATM 23 C C22 H8D . . . B 2 -20.888 -19.86 13.784 1 65.41 ? C22 H8D 2001 A 1 HETATM 24 O O1 H8D . . . B 2 -24.112 -18.969 11.761 1 75.25 ? O1 H8D 2001 A 1 HETATM 25 O O2 H8D . . . B 2 -21.372 -18.654 14.34 1 60.34 ? O2 H8D 2001 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #