data_6DRY # _model_server_result.job_id CtXxCh2W-qJJ1rBleQkfsA _model_server_result.datetime_utc '2024-11-21 14:00:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dry # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2002}' # _entry.id 6DRY # _exptl.entry_id 6DRY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DRY _cell.length_a 59.662 _cell.length_b 119.452 _cell.length_c 171.021 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 128 1_555 A SG CYS 172 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 357 A CYS 350 1_555 A SG CYS 360 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 6DRY _atom_sites.fract_transf_matrix[1][1] 0.016761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H8D A 1 2001 2001 H8D DRG . C 3 CLR A 1 2002 2002 CLR CLR . D 4 OLA A 1 2003 2003 OLA OLA . E 5 OLC A 1 2004 2004 OLC OLC . F 6 PEG A 1 2005 2005 PEG PEG . G 7 PO4 A 1 2006 2006 PO4 PO4 . H 7 PO4 A 1 2007 2007 PO4 PO4 . I 8 HOH A 1 2101 2009 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . C 3 -8.117 -27.302 -12.734 1 70.17 ? C1 CLR 2002 A 1 HETATM 2 C C2 CLR . . . C 3 -8.475 -27.032 -14.186 1 64.42 ? C2 CLR 2002 A 1 HETATM 3 C C3 CLR . . . C 3 -8.548 -28.342 -14.953 1 71.24 ? C3 CLR 2002 A 1 HETATM 4 C C4 CLR . . . C 3 -9.695 -29.172 -14.394 1 82.83 ? C4 CLR 2002 A 1 HETATM 5 C C5 CLR . . . C 3 -9.626 -29.292 -12.886 1 82.17 ? C5 CLR 2002 A 1 HETATM 6 C C6 CLR . . . C 3 -10.011 -30.461 -12.346 1 83.07 ? C6 CLR 2002 A 1 HETATM 7 C C7 CLR . . . C 3 -9.666 -30.89 -10.939 1 67.68 ? C7 CLR 2002 A 1 HETATM 8 C C8 CLR . . . C 3 -9.472 -29.68 -10.043 1 73.57 ? C8 CLR 2002 A 1 HETATM 9 C C9 CLR . . . C 3 -8.566 -28.658 -10.725 1 78.13 ? C9 CLR 2002 A 1 HETATM 10 C C10 CLR . . . C 3 -9.178 -28.132 -12.021 1 76.06 ? C10 CLR 2002 A 1 HETATM 11 C C11 CLR . . . C 3 -8.177 -27.504 -9.793 1 67.42 ? C11 CLR 2002 A 1 HETATM 12 C C12 CLR . . . C 3 -7.638 -27.97 -8.439 1 73.11 ? C12 CLR 2002 A 1 HETATM 13 C C13 CLR . . . C 3 -8.64 -28.915 -7.787 1 78.38 ? C13 CLR 2002 A 1 HETATM 14 C C14 CLR . . . C 3 -8.843 -30.091 -8.72 1 77.04 ? C14 CLR 2002 A 1 HETATM 15 C C15 CLR . . . C 3 -9.558 -31.135 -7.875 1 76.02 ? C15 CLR 2002 A 1 HETATM 16 C C16 CLR . . . C 3 -9.013 -30.896 -6.464 1 81.61 ? C16 CLR 2002 A 1 HETATM 17 C C17 CLR . . . C 3 -8.175 -29.615 -6.513 1 73.73 ? C17 CLR 2002 A 1 HETATM 18 C C18 CLR . . . C 3 -9.956 -28.19 -7.508 1 92.08 ? C18 CLR 2002 A 1 HETATM 19 C C19 CLR . . . C 3 -10.393 -27.267 -11.712 1 82.14 ? C19 CLR 2002 A 1 HETATM 20 C C20 CLR . . . C 3 -8.285 -28.761 -5.249 1 77.22 ? C20 CLR 2002 A 1 HETATM 21 C C21 CLR . . . C 3 -6.977 -28.021 -4.976 1 96.05 ? C21 CLR 2002 A 1 HETATM 22 C C22 CLR . . . C 3 -8.721 -29.577 -4.031 1 72.48 ? C22 CLR 2002 A 1 HETATM 23 C C23 CLR . . . C 3 -7.53 -30.071 -3.211 1 71.74 ? C23 CLR 2002 A 1 HETATM 24 C C24 CLR . . . C 3 -7.579 -29.573 -1.77 1 89.69 ? C24 CLR 2002 A 1 HETATM 25 C C25 CLR . . . C 3 -8.745 -30.175 -0.995 1 97.01 ? C25 CLR 2002 A 1 HETATM 26 C C26 CLR . . . C 3 -8.255 -31.276 -0.062 1 93.72 ? C26 CLR 2002 A 1 HETATM 27 C C27 CLR . . . C 3 -9.497 -29.1 -0.219 1 88.19 ? C27 CLR 2002 A 1 HETATM 28 O O1 CLR . . . C 3 -8.792 -28.059 -16.335 1 72.57 ? O1 CLR 2002 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #