data_6DRY # _model_server_result.job_id T82NBdTMe3Pha0oTaCEnqw _model_server_result.datetime_utc '2024-11-04 23:04:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dry # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2004}' # _entry.id 6DRY # _exptl.entry_id 6DRY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DRY _cell.length_a 59.662 _cell.length_b 119.452 _cell.length_c 171.021 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 128 1_555 A SG CYS 172 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 357 A CYS 350 1_555 A SG CYS 360 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 420 n n C10 C9 OLC doub 421 n n C10 C11 OLC sing 422 n n C9 C8 OLC sing 423 n n C17 C16 OLC sing 424 z n C11 C12 OLC sing 425 n n C8 C7 OLC sing 426 n n C24 C22 OLC sing 427 n n C24 O25 OLC sing 428 n n C16 C15 OLC sing 429 n n C12 C13 OLC sing 430 n n C7 C6 OLC sing 431 n n C15 C14 OLC sing 432 n n C13 C14 OLC sing 433 n n C6 C5 OLC sing 434 n n C5 C4 OLC sing 435 n n C4 C3 OLC sing 436 n n C3 C2 OLC sing 437 n n C2 C1 OLC sing 438 n n C21 C22 OLC sing 439 n n C21 O20 OLC sing 440 n n C1 O19 OLC doub 441 n n C1 O20 OLC sing 442 n n C22 O23 OLC sing 443 n n C18 H18 OLC sing 444 n n C18 H18A OLC sing 445 n n C18 H18B OLC sing 446 n n C10 H10 OLC sing 447 n n C9 H9 OLC sing 448 n n C17 H17 OLC sing 449 n n C17 H17A OLC sing 450 n n C11 H11 OLC sing 451 n n C11 H11A OLC sing 452 n n C8 H8 OLC sing 453 n n C8 H8A OLC sing 454 n n C24 H24 OLC sing 455 n n C24 H24A OLC sing 456 n n C16 H16 OLC sing 457 n n C16 H16A OLC sing 458 n n C12 H12 OLC sing 459 n n C12 H12A OLC sing 460 n n C7 H7 OLC sing 461 n n C7 H7A OLC sing 462 n n C15 H15 OLC sing 463 n n C15 H15A OLC sing 464 n n C13 H13 OLC sing 465 n n C13 H13A OLC sing 466 n n C6 H6 OLC sing 467 n n C6 H6A OLC sing 468 n n C14 H14 OLC sing 469 n n C14 H14A OLC sing 470 n n C5 H5 OLC sing 471 n n C5 H5A OLC sing 472 n n C4 H4 OLC sing 473 n n C4 H4A OLC sing 474 n n C3 H3 OLC sing 475 n n C3 H3A OLC sing 476 n n C2 H2 OLC sing 477 n n C2 H2A OLC sing 478 n n C21 H21 OLC sing 479 n n C21 H21A OLC sing 480 n n C22 H22 OLC sing 481 n n O25 HO25 OLC sing 482 n n O23 HO23 OLC sing 483 n n # _atom_sites.entry_id 6DRY _atom_sites.fract_transf_matrix[1][1] 0.016761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H8D A 1 2001 2001 H8D DRG . C 3 CLR A 1 2002 2002 CLR CLR . D 4 OLA A 1 2003 2003 OLA OLA . E 5 OLC A 1 2004 2004 OLC OLC . F 6 PEG A 1 2005 2005 PEG PEG . G 7 PO4 A 1 2006 2006 PO4 PO4 . H 7 PO4 A 1 2007 2007 PO4 PO4 . I 8 HOH A 1 2101 2009 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . E 5 -44.076 -18.222 -4.004 1 64.61 ? C10 OLC 2004 A 1 HETATM 2 C C9 OLC . . . E 5 -43.219 -18.633 -4.936 1 71.96 ? C9 OLC 2004 A 1 HETATM 3 C C11 OLC . . . E 5 -45.218 -17.301 -4.365 1 68.79 ? C11 OLC 2004 A 1 HETATM 4 C C8 OLC . . . E 5 -43.368 -18.176 -6.368 1 67.11 ? C8 OLC 2004 A 1 HETATM 5 C C24 OLC . . . E 5 -36.436 -13.985 -14.713 1 108.2 ? C24 OLC 2004 A 1 HETATM 6 C C12 OLC . . . E 5 -46.538 -17.957 -3.975 1 78.67 ? C12 OLC 2004 A 1 HETATM 7 C C7 OLC . . . E 5 -42.112 -18.516 -7.164 1 59.22 ? C7 OLC 2004 A 1 HETATM 8 C C6 OLC . . . E 5 -40.859 -17.886 -6.565 1 72.05 ? C6 OLC 2004 A 1 HETATM 9 C C5 OLC . . . E 5 -39.644 -18.17 -7.442 1 63.14 ? C5 OLC 2004 A 1 HETATM 10 C C4 OLC . . . E 5 -38.399 -17.459 -6.92 1 64.04 ? C4 OLC 2004 A 1 HETATM 11 C C3 OLC . . . E 5 -37.363 -17.275 -8.024 1 62.7 ? C3 OLC 2004 A 1 HETATM 12 C C2 OLC . . . E 5 -38.024 -16.688 -9.265 1 79.45 ? C2 OLC 2004 A 1 HETATM 13 C C21 OLC . . . E 5 -36.573 -14.883 -12.377 1 83.08 ? C21 OLC 2004 A 1 HETATM 14 C C1 OLC . . . E 5 -37.015 -16.037 -10.182 1 90.97 ? C1 OLC 2004 A 1 HETATM 15 C C22 OLC . . . E 5 -37.275 -14.792 -13.728 1 100.63 ? C22 OLC 2004 A 1 HETATM 16 O O19 OLC . . . E 5 -35.838 -15.948 -9.871 1 88.32 ? O19 OLC 2004 A 1 HETATM 17 O O25 OLC . . . E 5 -36.369 -12.62 -14.285 1 112.55 ? O25 OLC 2004 A 1 HETATM 18 O O23 OLC . . . E 5 -37.478 -16.113 -14.243 1 101.73 ? O23 OLC 2004 A 1 HETATM 19 O O20 OLC . . . E 5 -37.467 -15.51 -11.46 1 80.8 ? O20 OLC 2004 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 19 #