data_6DS7 # _model_server_result.job_id a-PUPrLF4OMxgSPyRtA5sg _model_server_result.datetime_utc '2024-12-03 00:23:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ds7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6DS7 # _exptl.entry_id 6DS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DS7 _cell.length_a 38.21 _cell.length_b 68.571 _cell.length_c 74.09 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 74 A HIS 75 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc2 B NE2 HIS 74 B HIS 75 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 6DS7 _atom_sites.fract_transf_matrix[1][1] 0.026171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 201 HEM HEM . D 2 HEM A 1 202 202 HEM HEM . E 3 CL A 1 203 203 CL CL . F 2 HEM B 1 201 201 HEM HEM . G 2 HEM B 1 202 202 HEM HEM . H 3 CL B 1 203 203 CL CL . I 4 HOH A 1 301 34 HOH HOH . I 4 HOH A 2 302 83 HOH HOH . I 4 HOH A 3 303 23 HOH HOH . I 4 HOH A 4 304 122 HOH HOH . I 4 HOH A 5 305 101 HOH HOH . I 4 HOH A 6 306 60 HOH HOH . I 4 HOH A 7 307 79 HOH HOH . I 4 HOH A 8 308 39 HOH HOH . I 4 HOH A 9 309 84 HOH HOH . I 4 HOH A 10 310 106 HOH HOH . I 4 HOH A 11 311 56 HOH HOH . I 4 HOH A 12 312 89 HOH HOH . I 4 HOH A 13 313 87 HOH HOH . I 4 HOH A 14 314 57 HOH HOH . I 4 HOH A 15 315 66 HOH HOH . I 4 HOH A 16 316 31 HOH HOH . I 4 HOH A 17 317 13 HOH HOH . I 4 HOH A 18 318 3 HOH HOH . I 4 HOH A 19 319 86 HOH HOH . I 4 HOH A 20 320 8 HOH HOH . I 4 HOH A 21 321 117 HOH HOH . I 4 HOH A 22 322 120 HOH HOH . I 4 HOH A 23 323 90 HOH HOH . I 4 HOH A 24 324 80 HOH HOH . I 4 HOH A 25 325 11 HOH HOH . I 4 HOH A 26 326 88 HOH HOH . I 4 HOH A 27 327 16 HOH HOH . I 4 HOH A 28 328 111 HOH HOH . I 4 HOH A 29 329 78 HOH HOH . I 4 HOH A 30 330 2 HOH HOH . I 4 HOH A 31 331 38 HOH HOH . I 4 HOH A 32 332 64 HOH HOH . I 4 HOH A 33 333 52 HOH HOH . I 4 HOH A 34 334 37 HOH HOH . I 4 HOH A 35 335 63 HOH HOH . I 4 HOH A 36 336 25 HOH HOH . I 4 HOH A 37 337 112 HOH HOH . I 4 HOH A 38 338 21 HOH HOH . I 4 HOH A 39 339 22 HOH HOH . I 4 HOH A 40 340 40 HOH HOH . I 4 HOH A 41 341 45 HOH HOH . I 4 HOH A 42 342 104 HOH HOH . I 4 HOH A 43 343 17 HOH HOH . I 4 HOH A 44 344 62 HOH HOH . I 4 HOH A 45 345 98 HOH HOH . I 4 HOH A 46 346 33 HOH HOH . I 4 HOH A 47 347 61 HOH HOH . I 4 HOH A 48 348 41 HOH HOH . I 4 HOH A 49 349 114 HOH HOH . I 4 HOH A 50 350 7 HOH HOH . I 4 HOH A 51 351 18 HOH HOH . I 4 HOH A 52 352 96 HOH HOH . I 4 HOH A 53 353 28 HOH HOH . I 4 HOH A 54 354 121 HOH HOH . I 4 HOH A 55 355 48 HOH HOH . I 4 HOH A 56 356 102 HOH HOH . I 4 HOH A 57 357 36 HOH HOH . I 4 HOH A 58 358 113 HOH HOH . I 4 HOH A 59 359 58 HOH HOH . I 4 HOH A 60 360 53 HOH HOH . I 4 HOH A 61 361 93 HOH HOH . I 4 HOH A 62 362 74 HOH HOH . I 4 HOH A 63 363 65 HOH HOH . J 4 HOH B 1 301 9 HOH HOH . J 4 HOH B 2 302 124 HOH HOH . J 4 HOH B 3 303 24 HOH HOH . J 4 HOH B 4 304 71 HOH HOH . J 4 HOH B 5 305 29 HOH HOH . J 4 HOH B 6 306 1 HOH HOH . J 4 HOH B 7 307 77 HOH HOH . J 4 HOH B 8 308 123 HOH HOH . J 4 HOH B 9 309 94 HOH HOH . J 4 HOH B 10 310 6 HOH HOH . J 4 HOH B 11 311 81 HOH HOH . J 4 HOH B 12 312 12 HOH HOH . J 4 HOH B 13 313 32 HOH HOH . J 4 HOH B 14 314 110 HOH HOH . J 4 HOH B 15 315 46 HOH HOH . J 4 HOH B 16 316 51 HOH HOH . J 4 HOH B 17 317 105 HOH HOH . J 4 HOH B 18 318 54 HOH HOH . J 4 HOH B 19 319 14 HOH HOH . J 4 HOH B 20 320 76 HOH HOH . J 4 HOH B 21 321 27 HOH HOH . J 4 HOH B 22 322 30 HOH HOH . J 4 HOH B 23 323 109 HOH HOH . J 4 HOH B 24 324 67 HOH HOH . J 4 HOH B 25 325 43 HOH HOH . J 4 HOH B 26 326 75 HOH HOH . J 4 HOH B 27 327 82 HOH HOH . J 4 HOH B 28 328 26 HOH HOH . J 4 HOH B 29 329 5 HOH HOH . J 4 HOH B 30 330 35 HOH HOH . J 4 HOH B 31 331 4 HOH HOH . J 4 HOH B 32 332 15 HOH HOH . J 4 HOH B 33 333 100 HOH HOH . J 4 HOH B 34 334 68 HOH HOH . J 4 HOH B 35 335 50 HOH HOH . J 4 HOH B 36 336 69 HOH HOH . J 4 HOH B 37 337 97 HOH HOH . J 4 HOH B 38 338 19 HOH HOH . J 4 HOH B 39 339 91 HOH HOH . J 4 HOH B 40 340 125 HOH HOH . J 4 HOH B 41 341 49 HOH HOH . J 4 HOH B 42 342 107 HOH HOH . J 4 HOH B 43 343 103 HOH HOH . J 4 HOH B 44 344 47 HOH HOH . J 4 HOH B 45 345 10 HOH HOH . J 4 HOH B 46 346 73 HOH HOH . J 4 HOH B 47 347 92 HOH HOH . J 4 HOH B 48 348 85 HOH HOH . J 4 HOH B 49 349 99 HOH HOH . J 4 HOH B 50 350 118 HOH HOH . J 4 HOH B 51 351 20 HOH HOH . J 4 HOH B 52 352 42 HOH HOH . J 4 HOH B 53 353 95 HOH HOH . J 4 HOH B 54 354 72 HOH HOH . J 4 HOH B 55 355 44 HOH HOH . J 4 HOH B 56 356 115 HOH HOH . J 4 HOH B 57 357 108 HOH HOH . J 4 HOH B 58 358 119 HOH HOH . J 4 HOH B 59 359 59 HOH HOH . J 4 HOH B 60 360 55 HOH HOH . J 4 HOH B 61 361 70 HOH HOH . J 4 HOH B 62 362 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -20.508 10.463 -5.642 1 26.49 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . C 2 -16.088 12.175 -6.848 1 26.19 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . C 2 -14.674 7.672 -7.903 1 20.99 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . C 2 -18.834 5.877 -6.202 1 20.09 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . C 2 -19.436 11.335 -5.828 1 27.15 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . C 2 -19.38 12.77 -5.547 1 26.91 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . C 2 -18.17 13.199 -5.86 1 27.39 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . C 2 -17.391 12.093 -6.377 1 26.34 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . C 2 -17.674 14.651 -5.69 1 26.29 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . C 2 -20.451 13.691 -4.895 1 30.2 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . C 2 -21.669 13.962 -5.75 1 35.47 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . C 2 -22.53 14.97 -4.994 1 50.17 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . C 2 -22.094 15.503 -3.931 1 51.59 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . C 2 -23.668 15.271 -5.446 1 53.35 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . C 2 -15.318 11.118 -7.293 1 22.78 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . C 2 -13.961 11.185 -7.835 1 24.79 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . C 2 -13.581 9.926 -8.123 1 28.75 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . C 2 -14.675 9.036 -7.767 1 23.23 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . C 2 -13.134 12.48 -8.025 1 33.58 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . C 2 -12.246 9.443 -8.727 1 27.95 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . C 2 -11.184 10.243 -8.879 1 25.85 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . C 2 -15.644 6.823 -7.436 1 14.52 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . C 2 -15.52 5.386 -7.455 1 17.48 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . C 2 -16.651 4.883 -6.943 1 21.77 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . C 2 -17.55 5.981 -6.674 1 19.59 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . C 2 -14.232 4.656 -7.926 1 22.04 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . C 2 -17.044 3.426 -6.703 1 18.91 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . C 2 -16.323 2.406 -7.161 1 32.03 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . C 2 -19.685 6.945 -5.962 1 17.11 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . C 2 -21.111 6.889 -5.658 1 20.98 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . C 2 -21.549 8.161 -5.501 1 22.55 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . C 2 -20.442 9.059 -5.708 1 22.91 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . C 2 -21.941 5.586 -5.564 1 17.56 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . C 2 -22.964 8.645 -5.14 1 32.57 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . C 2 -23.798 8.898 -6.384 1 37.54 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . C 2 -25.143 9.493 -6.012 1 45.67 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . C 2 -26.128 9.153 -6.699 1 52.24 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . C 2 -25.259 10.294 -5.041 1 52.11 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . C 2 -18.195 10.957 -6.344 1 21.34 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . C 2 -15.721 9.784 -7.231 1 21.36 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . C 2 -16.905 7.164 -6.999 1 18.59 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . C 2 -19.321 8.279 -5.994 1 22.19 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . C 2 -17.616 9.073 -6.778 1 21.23 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #