data_6DS8 # _model_server_result.job_id R5pa88CBLRKH1PEhwUKgVA _model_server_result.datetime_utc '2024-11-14 10:27:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ds8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6DS8 # _exptl.entry_id 6DS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 615.58 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE PROTOPORPHYRIN IX' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DS8 _cell.length_a 39.02 _cell.length_b 68.701 _cell.length_c 74.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 74 A HIS 75 1_555 C MN MNH . A MNH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc2 D MN MNH . A MNH 202 1_555 E CL CL . A CL 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc3 B NE2 HIS 74 B HIS 75 1_555 F MN MNH . B MNH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc4 G MN MNH . B MNH 202 1_555 H CL CL . B CL 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? # _chem_comp.formula 'C34 H32 Mn N4 O4 4' _chem_comp.formula_weight 615.58 _chem_comp.id MNH _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE PROTOPORPHYRIN IX' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MN NA MNH sing 205 n n MN NB MNH sing 206 n n MN NC MNH sing 207 n n MN ND MNH sing 208 n n CHA C1A MNH doub 209 n y CHA C4D MNH sing 210 n y CHA HHA MNH sing 211 n n CHB C4A MNH doub 212 n y CHB C1B MNH sing 213 n y CHB HHB MNH sing 214 n n CHC C4B MNH doub 215 n y CHC C1C MNH sing 216 n y CHC HHC MNH sing 217 n n CHD C4C MNH sing 218 n y CHD C1D MNH doub 219 n y CHD HHD MNH sing 220 n n NA C1A MNH sing 221 n y NA C4A MNH sing 222 n y C1A C2A MNH sing 223 n y C2A C3A MNH doub 224 n y C2A CAA MNH sing 225 n n C3A C4A MNH sing 226 n y C3A CMA MNH sing 227 n n CMA HMA1 MNH sing 228 n n CMA HMA2 MNH sing 229 n n CMA HMA3 MNH sing 230 n n CAA CBA MNH sing 231 n n CAA HAA1 MNH sing 232 n n CAA HAA2 MNH sing 233 n n CBA CGA MNH sing 234 n n CBA HBA1 MNH sing 235 n n CBA HBA2 MNH sing 236 n n CGA O1A MNH sing 237 n n CGA O2A MNH doub 238 n n O1A H1A MNH sing 239 n n NB C1B MNH doub 240 n y NB C4B MNH sing 241 n y C1B C2B MNH sing 242 n n C2B C3B MNH doub 243 n n C2B CMB MNH sing 244 n n C3B C4B MNH sing 245 n n C3B CAB MNH sing 246 n n CMB HMB1 MNH sing 247 n n CMB HMB2 MNH sing 248 n n CMB HMB3 MNH sing 249 n n CAB CBB MNH doub 250 n n CAB HAB MNH sing 251 n n CBB HBB1 MNH sing 252 n n CBB HBB2 MNH sing 253 n n NC C1C MNH sing 254 n y NC C4C MNH sing 255 n y C1C C2C MNH doub 256 n y C2C C3C MNH sing 257 n y C2C CMC MNH sing 258 n n C3C C4C MNH doub 259 n y C3C CAC MNH sing 260 n n CMC HMC1 MNH sing 261 n n CMC HMC2 MNH sing 262 n n CMC HMC3 MNH sing 263 n n CAC CBC MNH doub 264 n n CAC HAC MNH sing 265 n n CBC HBC1 MNH sing 266 n n CBC HBC2 MNH sing 267 n n ND C1D MNH sing 268 n y ND C4D MNH doub 269 n y C1D C2D MNH sing 270 n n C2D C3D MNH doub 271 n n C2D CMD MNH sing 272 n n C3D C4D MNH sing 273 n n C3D CAD MNH sing 274 n n CMD HMD1 MNH sing 275 n n CMD HMD2 MNH sing 276 n n CMD HMD3 MNH sing 277 n n CAD CBD MNH sing 278 n n CAD HAD1 MNH sing 279 n n CAD HAD2 MNH sing 280 n n CBD CGD MNH sing 281 n n CBD HBD1 MNH sing 282 n n CBD HBD2 MNH sing 283 n n CGD O1D MNH doub 284 n n CGD O2D MNH sing 285 n n O2D H2D MNH sing 286 n n # _atom_sites.entry_id 6DS8 _atom_sites.fract_transf_matrix[1][1] 0.025628 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MNH A 1 201 201 MNH MNH . D 2 MNH A 1 202 202 MNH MNH . E 3 CL A 1 203 203 CL CL . F 2 MNH B 1 201 201 MNH MNH . G 2 MNH B 1 202 202 MNH MNH . H 3 CL B 1 203 203 CL CL . I 4 HOH A 1 301 1 HOH HOH . I 4 HOH A 2 302 5 HOH HOH . I 4 HOH A 3 303 9 HOH HOH . I 4 HOH A 4 304 3 HOH HOH . I 4 HOH A 5 305 10 HOH HOH . I 4 HOH A 6 306 20 HOH HOH . I 4 HOH A 7 307 19 HOH HOH . I 4 HOH A 8 308 18 HOH HOH . I 4 HOH A 9 309 12 HOH HOH . I 4 HOH A 10 310 16 HOH HOH . I 4 HOH A 11 311 24 HOH HOH . J 4 HOH B 1 301 23 HOH HOH . J 4 HOH B 2 302 4 HOH HOH . J 4 HOH B 3 303 13 HOH HOH . J 4 HOH B 4 304 14 HOH HOH . J 4 HOH B 5 305 8 HOH HOH . J 4 HOH B 6 306 15 HOH HOH . J 4 HOH B 7 307 2 HOH HOH . J 4 HOH B 8 308 21 HOH HOH . J 4 HOH B 9 309 22 HOH HOH . J 4 HOH B 10 310 7 HOH HOH . J 4 HOH B 11 311 6 HOH HOH . J 4 HOH B 12 312 11 HOH HOH . J 4 HOH B 13 313 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MN MN MNH . . . C 2 17.747 9.086 6.563 1 30.43 ? MN MNH 201 A 1 HETATM 2 C CHA MNH . . . C 2 20.415 10.354 5.573 1 31.05 ? CHA MNH 201 A 1 HETATM 3 C CHB MNH . . . C 2 16.36 11.902 6.77 1 28.59 ? CHB MNH 201 A 1 HETATM 4 C CHC MNH . . . C 2 14.948 7.764 7.739 1 27.41 ? CHC MNH 201 A 1 HETATM 5 C CHD MNH . . . C 2 18.9 6.261 6.277 1 27.34 ? CHD MNH 201 A 1 HETATM 6 N NA MNH . . . C 2 18.449 11.016 6.592 1 28.65 ? NA MNH 201 A 1 HETATM 7 C C1A MNH . . . C 2 19.548 11.396 5.874 1 30.23 ? C1A MNH 201 A 1 HETATM 8 C C2A MNH . . . C 2 19.478 12.777 5.549 1 28.62 ? C2A MNH 201 A 1 HETATM 9 C C3A MNH . . . C 2 18.29 13.235 5.855 1 34.5 ? C3A MNH 201 A 1 HETATM 10 C C4A MNH . . . C 2 17.658 12.1 6.419 1 31.95 ? C4A MNH 201 A 1 HETATM 11 C CMA MNH . . . C 2 17.655 14.591 5.698 1 36.87 ? CMA MNH 201 A 1 HETATM 12 C CAA MNH . . . C 2 20.566 13.534 4.833 1 33.76 ? CAA MNH 201 A 1 HETATM 13 C CBA MNH . . . C 2 21.741 13.909 5.684 1 41.41 ? CBA MNH 201 A 1 HETATM 14 C CGA MNH . . . C 2 22.937 14.611 5.081 1 52.76 ? CGA MNH 201 A 1 HETATM 15 O O1A MNH . . . C 2 23.828 13.961 4.531 1 56.76 ? O1A MNH 201 A 1 HETATM 16 O O2A MNH . . . C 2 22.91 15.834 5.217 1 41.94 ? O2A MNH 201 A 1 HETATM 17 N NB MNH . . . C 2 15.86 9.808 7.41 1 25.74 ? NB MNH 201 A 1 HETATM 18 C C1B MNH . . . C 2 15.404 11.072 7.291 1 25.38 ? C1B MNH 201 A 1 HETATM 19 C C2B MNH . . . C 2 14.132 11.344 7.792 1 29.48 ? C2B MNH 201 A 1 HETATM 20 C C3B MNH . . . C 2 13.824 10.08 8.12 1 23.16 ? C3B MNH 201 A 1 HETATM 21 C C4B MNH . . . C 2 14.799 9.117 7.827 1 27.75 ? C4B MNH 201 A 1 HETATM 22 C CMB MNH . . . C 2 13.524 12.749 7.804 1 32.64 ? CMB MNH 201 A 1 HETATM 23 C CAB MNH . . . C 2 12.5 9.731 8.704 1 25.22 ? CAB MNH 201 A 1 HETATM 24 C CBB MNH . . . C 2 11.356 10.217 9.517 1 29.43 ? CBB MNH 201 A 1 HETATM 25 N NC MNH . . . C 2 16.959 7.135 6.941 1 21.98 ? NC MNH 201 A 1 HETATM 26 C C1C MNH . . . C 2 15.773 6.743 7.391 1 24.62 ? C1C MNH 201 A 1 HETATM 27 C C2C MNH . . . C 2 15.618 5.332 7.306 1 21.91 ? C2C MNH 201 A 1 HETATM 28 C C3C MNH . . . C 2 16.759 4.882 6.857 1 20.91 ? C3C MNH 201 A 1 HETATM 29 C C4C MNH . . . C 2 17.602 5.998 6.642 1 26.34 ? C4C MNH 201 A 1 HETATM 30 C CMC MNH . . . C 2 14.384 4.592 7.762 1 20.34 ? CMC MNH 201 A 1 HETATM 31 C CAC MNH . . . C 2 17.145 3.469 6.616 1 23.26 ? CAC MNH 201 A 1 HETATM 32 C CBC MNH . . . C 2 16.781 2.227 7.325 1 29.94 ? CBC MNH 201 A 1 HETATM 33 N ND MNH . . . C 2 19.63 8.323 6.204 1 25.03 ? ND MNH 201 A 1 HETATM 34 C C1D MNH . . . C 2 19.996 7.051 6.099 1 27.22 ? C1D MNH 201 A 1 HETATM 35 C C2D MNH . . . C 2 21.346 6.867 5.716 1 30.67 ? C2D MNH 201 A 1 HETATM 36 C C3D MNH . . . C 2 21.756 8.108 5.438 1 31.18 ? C3D MNH 201 A 1 HETATM 37 C C4D MNH . . . C 2 20.68 8.993 5.675 1 29.47 ? C4D MNH 201 A 1 HETATM 38 C CMD MNH . . . C 2 22.093 5.552 5.674 1 30.01 ? CMD MNH 201 A 1 HETATM 39 C CAD MNH . . . C 2 23.147 8.482 4.97 1 31.54 ? CAD MNH 201 A 1 HETATM 40 C CBD MNH . . . C 2 24.113 8.73 6.112 1 35.63 ? CBD MNH 201 A 1 HETATM 41 C CGD MNH . . . C 2 25.465 9.32 5.847 1 37.44 ? CGD MNH 201 A 1 HETATM 42 O O1D MNH . . . C 2 25.876 9.743 4.789 1 43.97 ? O1D MNH 201 A 1 HETATM 43 O O2D MNH . . . C 2 26.199 9.367 6.809 1 43.53 ? O2D MNH 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #