data_6DS8
#
_model_server_result.job_id            4QFetPnt8suyRodX4m6qZA 
_model_server_result.datetime_utc      '2024-11-24 07:49:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ds8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    6DS8 
#
_exptl.entry_id    6DS8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              615.58 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE PROTOPORPHYRIN IX' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DS8 
_cell.length_a            39.02 
_cell.length_b            68.701 
_cell.length_c            74.49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DS8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 F N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 74 A HIS 75 1_555 C MN MNH . A MNH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc2 D MN MNH . A MNH 202 1_555 E CL CL . A CL 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc3 B NE2 HIS 74 B HIS 75 1_555 F MN MNH . B MNH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc4 G MN MNH . B MNH 202 1_555 H CL CL . B CL 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
#
_chem_comp.formula           'C34 H32 Mn N4 O4 4' 
_chem_comp.formula_weight    615.58 
_chem_comp.id                MNH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE PROTOPORPHYRIN IX' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
MN NA MNH sing 205 n n 
MN NB MNH sing 206 n n 
MN NC MNH sing 207 n n 
MN ND MNH sing 208 n n 
CHA C1A MNH doub 209 n y 
CHA C4D MNH sing 210 n y 
CHA HHA MNH sing 211 n n 
CHB C4A MNH doub 212 n y 
CHB C1B MNH sing 213 n y 
CHB HHB MNH sing 214 n n 
CHC C4B MNH doub 215 n y 
CHC C1C MNH sing 216 n y 
CHC HHC MNH sing 217 n n 
CHD C4C MNH sing 218 n y 
CHD C1D MNH doub 219 n y 
CHD HHD MNH sing 220 n n 
NA C1A MNH sing 221 n y 
NA C4A MNH sing 222 n y 
C1A C2A MNH sing 223 n y 
C2A C3A MNH doub 224 n y 
C2A CAA MNH sing 225 n n 
C3A C4A MNH sing 226 n y 
C3A CMA MNH sing 227 n n 
CMA HMA1 MNH sing 228 n n 
CMA HMA2 MNH sing 229 n n 
CMA HMA3 MNH sing 230 n n 
CAA CBA MNH sing 231 n n 
CAA HAA1 MNH sing 232 n n 
CAA HAA2 MNH sing 233 n n 
CBA CGA MNH sing 234 n n 
CBA HBA1 MNH sing 235 n n 
CBA HBA2 MNH sing 236 n n 
CGA O1A MNH sing 237 n n 
CGA O2A MNH doub 238 n n 
O1A H1A MNH sing 239 n n 
NB C1B MNH doub 240 n y 
NB C4B MNH sing 241 n y 
C1B C2B MNH sing 242 n n 
C2B C3B MNH doub 243 n n 
C2B CMB MNH sing 244 n n 
C3B C4B MNH sing 245 n n 
C3B CAB MNH sing 246 n n 
CMB HMB1 MNH sing 247 n n 
CMB HMB2 MNH sing 248 n n 
CMB HMB3 MNH sing 249 n n 
CAB CBB MNH doub 250 n n 
CAB HAB MNH sing 251 n n 
CBB HBB1 MNH sing 252 n n 
CBB HBB2 MNH sing 253 n n 
NC C1C MNH sing 254 n y 
NC C4C MNH sing 255 n y 
C1C C2C MNH doub 256 n y 
C2C C3C MNH sing 257 n y 
C2C CMC MNH sing 258 n n 
C3C C4C MNH doub 259 n y 
C3C CAC MNH sing 260 n n 
CMC HMC1 MNH sing 261 n n 
CMC HMC2 MNH sing 262 n n 
CMC HMC3 MNH sing 263 n n 
CAC CBC MNH doub 264 n n 
CAC HAC MNH sing 265 n n 
CBC HBC1 MNH sing 266 n n 
CBC HBC2 MNH sing 267 n n 
ND C1D MNH sing 268 n y 
ND C4D MNH doub 269 n y 
C1D C2D MNH sing 270 n n 
C2D C3D MNH doub 271 n n 
C2D CMD MNH sing 272 n n 
C3D C4D MNH sing 273 n n 
C3D CAD MNH sing 274 n n 
CMD HMD1 MNH sing 275 n n 
CMD HMD2 MNH sing 276 n n 
CMD HMD3 MNH sing 277 n n 
CAD CBD MNH sing 278 n n 
CAD HAD1 MNH sing 279 n n 
CAD HAD2 MNH sing 280 n n 
CBD CGD MNH sing 281 n n 
CBD HBD1 MNH sing 282 n n 
CBD HBD2 MNH sing 283 n n 
CGD O1D MNH doub 284 n n 
CGD O2D MNH sing 285 n n 
O2D H2D MNH sing 286 n n 
#
_atom_sites.entry_id                     6DS8 
_atom_sites.fract_transf_matrix[1][1]    0.025628 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014556 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013425 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MNH A 1 201 201 MNH MNH . 
D 2 MNH A 1 202 202 MNH MNH . 
E 3 CL A 1 203 203 CL CL . 
F 2 MNH B 1 201 201 MNH MNH . 
G 2 MNH B 1 202 202 MNH MNH . 
H 3 CL B 1 203 203 CL CL . 
I 4 HOH A 1 301 1 HOH HOH . 
I 4 HOH A 2 302 5 HOH HOH . 
I 4 HOH A 3 303 9 HOH HOH . 
I 4 HOH A 4 304 3 HOH HOH . 
I 4 HOH A 5 305 10 HOH HOH . 
I 4 HOH A 6 306 20 HOH HOH . 
I 4 HOH A 7 307 19 HOH HOH . 
I 4 HOH A 8 308 18 HOH HOH . 
I 4 HOH A 9 309 12 HOH HOH . 
I 4 HOH A 10 310 16 HOH HOH . 
I 4 HOH A 11 311 24 HOH HOH . 
J 4 HOH B 1 301 23 HOH HOH . 
J 4 HOH B 2 302 4 HOH HOH . 
J 4 HOH B 3 303 13 HOH HOH . 
J 4 HOH B 4 304 14 HOH HOH . 
J 4 HOH B 5 305 8 HOH HOH . 
J 4 HOH B 6 306 15 HOH HOH . 
J 4 HOH B 7 307 2 HOH HOH . 
J 4 HOH B 8 308 21 HOH HOH . 
J 4 HOH B 9 309 22 HOH HOH . 
J 4 HOH B 10 310 7 HOH HOH . 
J 4 HOH B 11 311 6 HOH HOH . 
J 4 HOH B 12 312 11 HOH HOH . 
J 4 HOH B 13 313 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 MN MN MNH . . . F 2 7.387 -12.602 -23.495 1 30.25 ? MN MNH 201 B 1 
HETATM 2 C CHA MNH . . . F 2 8.206 -15.553 -22.666 1 26 ? CHA MNH 201 B 1 
HETATM 3 C CHB MNH . . . F 2 4.227 -13.559 -23.779 1 29.18 ? CHB MNH 201 B 1 
HETATM 4 C CHC MNH . . . F 2 6.59 -9.613 -24.659 1 25.73 ? CHC MNH 201 B 1 
HETATM 5 C CHD MNH . . . F 2 10.442 -11.688 -23.295 1 22.08 ? CHD MNH 201 B 1 
HETATM 6 N NA MNH . . . F 2 6.329 -14.428 -23.368 1 30.14 ? NA MNH 201 B 1 
HETATM 7 C C1A MNH . . . F 2 6.841 -15.581 -22.825 1 25.99 ? C1A MNH 201 B 1 
HETATM 8 C C2A MNH . . . F 2 5.818 -16.584 -22.569 1 29.99 ? C2A MNH 201 B 1 
HETATM 9 C C3A MNH . . . F 2 4.602 -16.035 -22.871 1 30.02 ? C3A MNH 201 B 1 
HETATM 10 C C4A MNH . . . F 2 4.96 -14.67 -23.326 1 31.97 ? C4A MNH 201 B 1 
HETATM 11 C CMA MNH . . . F 2 3.17 -16.561 -22.823 1 38.7 ? CMA MNH 201 B 1 
HETATM 12 C CAA MNH . . . F 2 6.348 -17.937 -22.029 1 31.14 ? CAA MNH 201 B 1 
HETATM 13 C CBA MNH . . . F 2 5.361 -19.102 -21.972 1 45.4 ? CBA MNH 201 B 1 
HETATM 14 C CGA MNH . . . F 2 5.816 -20.569 -22.072 1 53.06 ? CGA MNH 201 B 1 
HETATM 15 O O1A MNH . . . F 2 6.42 -21.112 -21.114 1 53.11 ? O1A MNH 201 B 1 
HETATM 16 O O2A MNH . . . F 2 5.522 -21.134 -23.171 1 46.01 ? O2A MNH 201 B 1 
HETATM 17 N NB MNH . . . F 2 5.574 -11.703 -24.316 1 26.11 ? NB MNH 201 B 1 
HETATM 18 C C1B MNH . . . F 2 4.269 -12.236 -24.271 1 32.11 ? C1B MNH 201 B 1 
HETATM 19 C C2B MNH . . . F 2 3.246 -11.331 -24.802 1 35.6 ? C2B MNH 201 B 1 
HETATM 20 C C3B MNH . . . F 2 4.052 -10.211 -25.044 1 30.61 ? C3B MNH 201 B 1 
HETATM 21 C C4B MNH . . . F 2 5.446 -10.385 -24.715 1 29.34 ? C4B MNH 201 B 1 
HETATM 22 C CMB MNH . . . F 2 1.759 -11.729 -24.953 1 35.3 ? CMB MNH 201 B 1 
HETATM 23 C CAB MNH . . . F 2 3.586 -8.879 -25.618 1 29.7 ? CAB MNH 201 B 1 
HETATM 24 C CBB MNH . . . F 2 4.1 -7.473 -25.863 1 32.04 ? CBB MNH 201 B 1 
HETATM 25 N NC MNH . . . F 2 8.436 -10.773 -23.946 1 28.54 ? NC MNH 201 B 1 
HETATM 26 C C1C MNH . . . F 2 7.928 -9.575 -24.351 1 27.29 ? C1C MNH 201 B 1 
HETATM 27 C C2C MNH . . . F 2 8.949 -8.543 -24.319 1 26.95 ? C2C MNH 201 B 1 
HETATM 28 C C3C MNH . . . F 2 10.088 -9.143 -23.888 1 25.5 ? C3C MNH 201 B 1 
HETATM 29 C C4C MNH . . . F 2 9.775 -10.538 -23.663 1 26.73 ? C4C MNH 201 B 1 
HETATM 30 C CMC MNH . . . F 2 8.654 -7.117 -24.777 1 22.99 ? CMC MNH 201 B 1 
HETATM 31 C CAC MNH . . . F 2 11.471 -8.537 -23.678 1 24.3 ? CAC MNH 201 B 1 
HETATM 32 C CBC MNH . . . F 2 12.035 -7.286 -24.338 1 23.22 ? CBC MNH 201 B 1 
HETATM 33 N ND MNH . . . F 2 9.227 -13.567 -23.193 1 23.79 ? ND MNH 201 B 1 
HETATM 34 C C1D MNH . . . F 2 10.508 -13.044 -23.082 1 26.62 ? C1D MNH 201 B 1 
HETATM 35 C C2D MNH . . . F 2 11.527 -14.034 -22.688 1 27.83 ? C2D MNH 201 B 1 
HETATM 36 C C3D MNH . . . F 2 10.774 -15.153 -22.528 1 27.32 ? C3D MNH 201 B 1 
HETATM 37 C C4D MNH . . . F 2 9.397 -14.853 -22.77 1 27.03 ? C4D MNH 201 B 1 
HETATM 38 C CMD MNH . . . F 2 13.037 -13.834 -22.508 1 24.15 ? CMD MNH 201 B 1 
HETATM 39 C CAD MNH . . . F 2 11.239 -16.524 -22.077 1 27.89 ? CAD MNH 201 B 1 
HETATM 40 C CBD MNH . . . F 2 11.596 -17.406 -23.269 1 36.33 ? CBD MNH 201 B 1 
HETATM 41 C CGD MNH . . . F 2 11.929 -18.841 -22.932 1 33.66 ? CGD MNH 201 B 1 
HETATM 42 O O1D MNH . . . F 2 12.185 -19.227 -21.778 1 33.48 ? O1D MNH 201 B 1 
HETATM 43 O O2D MNH . . . F 2 11.95 -19.629 -23.91 1 45.93 ? O2D MNH 201 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           42 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           780 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           43 
#