data_6DTV # _model_server_result.job_id Z2C4As0I49vGa7kk23kIrQ _model_server_result.datetime_utc '2024-10-20 01:26:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dtv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6DTV # _exptl.entry_id 6DTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DTV _cell.length_a 40.99 _cell.length_b 50.873 _cell.length_c 89.911 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 21 A CYS 336 1_555 B FE1 SF4 . A SF4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A SG CYS 102 A CYS 417 1_555 B FE2 SF4 . A SF4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc3 A SG CYS 119 A CYS 434 1_555 B FE4 SF4 . A SF4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc4 A SG CYS 159 A CYS 474 1_555 B FE3 SF4 . A SF4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 6DTV _atom_sites.fract_transf_matrix[1][1] 0.024396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019657 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 601 601 SF4 SF4 . C 3 MPD A 1 602 602 MPD MPD . D 3 MPD A 1 603 603 MPD MPD . E 4 HOH A 1 701 701 HOH HOH . E 4 HOH A 2 702 702 HOH HOH . E 4 HOH A 3 703 703 HOH HOH . E 4 HOH A 4 704 704 HOH HOH . E 4 HOH A 5 705 705 HOH HOH . E 4 HOH A 6 706 706 HOH HOH . E 4 HOH A 7 707 707 HOH HOH . E 4 HOH A 8 708 708 HOH HOH . E 4 HOH A 9 709 709 HOH HOH . E 4 HOH A 10 710 710 HOH HOH . E 4 HOH A 11 711 711 HOH HOH . E 4 HOH A 12 712 712 HOH HOH . E 4 HOH A 13 713 713 HOH HOH . E 4 HOH A 14 714 714 HOH HOH . E 4 HOH A 15 715 715 HOH HOH . E 4 HOH A 16 716 716 HOH HOH . E 4 HOH A 17 717 717 HOH HOH . E 4 HOH A 18 718 718 HOH HOH . E 4 HOH A 19 719 719 HOH HOH . E 4 HOH A 20 720 720 HOH HOH . E 4 HOH A 21 721 721 HOH HOH . E 4 HOH A 22 722 722 HOH HOH . E 4 HOH A 23 723 723 HOH HOH . E 4 HOH A 24 724 724 HOH HOH . E 4 HOH A 25 725 725 HOH HOH . E 4 HOH A 26 726 726 HOH HOH . E 4 HOH A 27 727 727 HOH HOH . E 4 HOH A 28 728 728 HOH HOH . E 4 HOH A 29 729 729 HOH HOH . E 4 HOH A 30 730 730 HOH HOH . E 4 HOH A 31 731 731 HOH HOH . E 4 HOH A 32 732 732 HOH HOH . E 4 HOH A 33 733 733 HOH HOH . E 4 HOH A 34 734 734 HOH HOH . E 4 HOH A 35 735 735 HOH HOH . E 4 HOH A 36 736 736 HOH HOH . E 4 HOH A 37 737 737 HOH HOH . E 4 HOH A 38 738 738 HOH HOH . E 4 HOH A 39 739 739 HOH HOH . E 4 HOH A 40 740 741 HOH HOH . E 4 HOH A 41 741 742 HOH HOH . E 4 HOH A 42 742 743 HOH HOH . E 4 HOH A 43 743 745 HOH HOH . E 4 HOH A 44 744 744 HOH HOH . E 4 HOH A 45 745 746 HOH HOH . E 4 HOH A 46 746 747 HOH HOH . E 4 HOH A 47 747 748 HOH HOH . E 4 HOH A 48 748 749 HOH HOH . E 4 HOH A 49 749 750 HOH HOH . E 4 HOH A 50 750 751 HOH HOH . E 4 HOH A 51 751 752 HOH HOH . E 4 HOH A 52 752 753 HOH HOH . E 4 HOH A 53 753 754 HOH HOH . E 4 HOH A 54 754 755 HOH HOH . E 4 HOH A 55 755 756 HOH HOH . E 4 HOH A 56 756 757 HOH HOH . E 4 HOH A 57 757 758 HOH HOH . E 4 HOH A 58 758 759 HOH HOH . E 4 HOH A 59 759 760 HOH HOH . E 4 HOH A 60 760 761 HOH HOH . E 4 HOH A 61 761 762 HOH HOH . E 4 HOH A 62 762 763 HOH HOH . E 4 HOH A 63 763 764 HOH HOH . E 4 HOH A 64 764 765 HOH HOH . E 4 HOH A 65 765 766 HOH HOH . E 4 HOH A 66 766 768 HOH HOH . E 4 HOH A 67 767 770 HOH HOH . E 4 HOH A 68 768 769 HOH HOH . E 4 HOH A 69 769 771 HOH HOH . E 4 HOH A 70 770 772 HOH HOH . E 4 HOH A 71 771 774 HOH HOH . E 4 HOH A 72 772 775 HOH HOH . E 4 HOH A 73 773 776 HOH HOH . E 4 HOH A 74 774 777 HOH HOH . E 4 HOH A 75 775 778 HOH HOH . E 4 HOH A 76 776 779 HOH HOH . E 4 HOH A 77 777 780 HOH HOH . E 4 HOH A 78 778 767 HOH HOH . E 4 HOH A 79 779 781 HOH HOH . E 4 HOH A 80 780 782 HOH HOH . E 4 HOH A 81 781 783 HOH HOH . E 4 HOH A 82 782 784 HOH HOH . E 4 HOH A 83 783 785 HOH HOH . E 4 HOH A 84 784 786 HOH HOH . E 4 HOH A 85 785 787 HOH HOH . E 4 HOH A 86 786 788 HOH HOH . E 4 HOH A 87 787 789 HOH HOH . E 4 HOH A 88 788 740 HOH HOH . E 4 HOH A 89 789 790 HOH HOH . E 4 HOH A 90 790 792 HOH HOH . E 4 HOH A 91 791 791 HOH HOH . E 4 HOH A 92 792 793 HOH HOH . E 4 HOH A 93 793 794 HOH HOH . E 4 HOH A 94 794 795 HOH HOH . E 4 HOH A 95 795 796 HOH HOH . E 4 HOH A 96 796 797 HOH HOH . E 4 HOH A 97 797 798 HOH HOH . E 4 HOH A 98 798 799 HOH HOH . E 4 HOH A 99 799 800 HOH HOH . E 4 HOH A 100 800 801 HOH HOH . E 4 HOH A 101 801 802 HOH HOH . E 4 HOH A 102 802 803 HOH HOH . E 4 HOH A 103 803 804 HOH HOH . E 4 HOH A 104 804 805 HOH HOH . E 4 HOH A 105 805 806 HOH HOH . E 4 HOH A 106 806 807 HOH HOH . E 4 HOH A 107 807 808 HOH HOH . E 4 HOH A 108 808 809 HOH HOH . E 4 HOH A 109 809 810 HOH HOH . E 4 HOH A 110 810 811 HOH HOH . E 4 HOH A 111 811 812 HOH HOH . E 4 HOH A 112 812 773 HOH HOH . E 4 HOH A 113 813 813 HOH HOH . E 4 HOH A 114 814 814 HOH HOH . E 4 HOH A 115 815 815 HOH HOH . E 4 HOH A 116 816 816 HOH HOH . E 4 HOH A 117 817 817 HOH HOH . E 4 HOH A 118 818 818 HOH HOH . E 4 HOH A 119 819 819 HOH HOH . E 4 HOH A 120 820 820 HOH HOH . E 4 HOH A 121 821 821 HOH HOH . E 4 HOH A 122 822 822 HOH HOH . E 4 HOH A 123 823 823 HOH HOH . E 4 HOH A 124 824 824 HOH HOH . E 4 HOH A 125 825 825 HOH HOH . E 4 HOH A 126 826 826 HOH HOH . E 4 HOH A 127 827 827 HOH HOH . E 4 HOH A 128 828 828 HOH HOH . E 4 HOH A 129 829 829 HOH HOH . E 4 HOH A 130 830 830 HOH HOH . E 4 HOH A 131 831 831 HOH HOH . E 4 HOH A 132 832 832 HOH HOH . E 4 HOH A 133 833 833 HOH HOH . E 4 HOH A 134 834 834 HOH HOH . E 4 HOH A 135 835 835 HOH HOH . E 4 HOH A 136 836 836 HOH HOH . E 4 HOH A 137 837 837 HOH HOH . E 4 HOH A 138 838 838 HOH HOH . E 4 HOH A 139 839 839 HOH HOH . E 4 HOH A 140 840 840 HOH HOH . E 4 HOH A 141 841 841 HOH HOH . E 4 HOH A 142 842 842 HOH HOH . E 4 HOH A 143 843 843 HOH HOH . E 4 HOH A 144 844 844 HOH HOH . E 4 HOH A 145 845 845 HOH HOH . E 4 HOH A 146 846 846 HOH HOH . E 4 HOH A 147 847 847 HOH HOH . E 4 HOH A 148 848 848 HOH HOH . E 4 HOH A 149 849 849 HOH HOH . E 4 HOH A 150 850 850 HOH HOH . E 4 HOH A 151 851 851 HOH HOH . E 4 HOH A 152 852 852 HOH HOH . E 4 HOH A 153 853 853 HOH HOH . E 4 HOH A 154 854 854 HOH HOH . E 4 HOH A 155 855 855 HOH HOH . E 4 HOH A 156 856 856 HOH HOH . E 4 HOH A 157 857 857 HOH HOH . E 4 HOH A 158 858 858 HOH HOH . E 4 HOH A 159 859 859 HOH HOH . E 4 HOH A 160 860 860 HOH HOH . E 4 HOH A 161 861 861 HOH HOH . E 4 HOH A 162 862 862 HOH HOH . E 4 HOH A 163 863 863 HOH HOH . E 4 HOH A 164 864 864 HOH HOH . E 4 HOH A 165 865 865 HOH HOH . E 4 HOH A 166 866 866 HOH HOH . E 4 HOH A 167 867 867 HOH HOH . E 4 HOH A 168 868 868 HOH HOH . E 4 HOH A 169 869 869 HOH HOH . E 4 HOH A 170 870 870 HOH HOH . E 4 HOH A 171 871 871 HOH HOH . E 4 HOH A 172 872 872 HOH HOH . E 4 HOH A 173 873 873 HOH HOH . E 4 HOH A 174 874 874 HOH HOH . E 4 HOH A 175 875 875 HOH HOH . E 4 HOH A 176 876 876 HOH HOH . E 4 HOH A 177 877 877 HOH HOH . E 4 HOH A 178 878 878 HOH HOH . E 4 HOH A 179 879 879 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 13.103 21.174 4.563 1 20.27 ? C1 MPD 602 A 1 HETATM 2 C C2 MPD . . . C 3 13.648 22.26 5.482 1 17.18 ? C2 MPD 602 A 1 HETATM 3 O O2 MPD . . . C 3 14.819 21.761 6.138 1 17.36 ? O2 MPD 602 A 1 HETATM 4 C CM MPD . . . C 3 12.613 22.623 6.541 1 16.55 ? CM MPD 602 A 1 HETATM 5 C C3 MPD . . . C 3 14.028 23.493 4.672 1 17.56 ? C3 MPD 602 A 1 HETATM 6 C C4 MPD . . . C 3 14.601 24.583 5.57 1 18.85 ? C4 MPD 602 A 1 HETATM 7 O O4 MPD . . . C 3 15.717 24.063 6.302 1 21.02 ? O4 MPD 602 A 1 HETATM 8 C C5 MPD . . . C 3 15.042 25.791 4.754 1 19.16 ? C5 MPD 602 A 1 HETATM 9 H H11 MPD . . . C 3 13.127 21.515 3.561 1 20.27 ? H11 MPD 602 A 1 HETATM 10 H H12 MPD . . . C 3 12.105 20.948 4.836 1 20.27 ? H12 MPD 602 A 1 HETATM 11 H H13 MPD . . . C 3 13.699 20.303 4.654 1 20.27 ? H13 MPD 602 A 1 HETATM 12 H HO2 MPD . . . C 3 15.57 22.338 5.941 1 17.36 ? HO2 MPD 602 A 1 HETATM 13 H HM1 MPD . . . C 3 11.971 21.797 6.705 1 16.55 ? HM1 MPD 602 A 1 HETATM 14 H HM2 MPD . . . C 3 13.105 22.873 7.445 1 16.55 ? HM2 MPD 602 A 1 HETATM 15 H HM3 MPD . . . C 3 12.044 23.452 6.208 1 16.55 ? HM3 MPD 602 A 1 HETATM 16 H H31 MPD . . . C 3 13.145 23.875 4.155 1 17.56 ? H31 MPD 602 A 1 HETATM 17 H H32 MPD . . . C 3 14.767 23.219 3.916 1 17.56 ? H32 MPD 602 A 1 HETATM 18 H H4 MPD . . . C 3 13.818 24.903 6.272 1 18.85 ? H4 MPD 602 A 1 HETATM 19 H HO4 MPD . . . C 3 15.952 24.677 7.011 1 21.02 ? HO4 MPD 602 A 1 HETATM 20 H H51 MPD . . . C 3 15.903 26.221 5.196 1 19.16 ? H51 MPD 602 A 1 HETATM 21 H H52 MPD . . . C 3 15.268 25.486 3.765 1 19.16 ? H52 MPD 602 A 1 HETATM 22 H H53 MPD . . . C 3 14.261 26.507 4.733 1 19.16 ? H53 MPD 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #