data_6DTW # _model_server_result.job_id '_tNeS_2oFdBDtRZpi1dD3Q' _model_server_result.datetime_utc '2025-01-10 20:09:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dtw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6DTW # _exptl.entry_id 6DTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.357 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 8-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-6-fluoroindolizine-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.5 _cell.angle_gamma 90 _cell.entry_id 6DTW _cell.length_a 162.289 _cell.length_b 73.899 _cell.length_c 108.249 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 445 A ASP 443 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc2 A OD1 ASP 500 A ASP 498 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? # _chem_comp.formula 'C21 H14 F2 N4 O4' _chem_comp.formula_weight 424.357 _chem_comp.id H9Y _chem_comp.mon_nstd_flag . _chem_comp.name 8-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-6-fluoroindolizine-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O0Q C0K H9Y doub 129 n n C0K N0M H9Y sing 130 n n C0K N0H H9Y sing 131 n n C0E C0D H9Y sing 132 n n C0E N0H H9Y sing 133 n n C0D O0B H9Y sing 134 n n N0M C0N H9Y sing 135 n n N0H C0P H9Y sing 136 n n F07 C01 H9Y sing 137 n n C00 C01 H9Y doub 138 n y C00 C05 H9Y sing 139 n y C0N O0S H9Y doub 140 n n C0N C0O H9Y sing 141 n n C0P C0O H9Y doub 142 n n O0B C05 H9Y sing 143 n n C01 C02 H9Y sing 144 n y C05 C04 H9Y doub 145 n y C02 C03 H9Y doub 146 n y C04 C03 H9Y sing 147 n y C04 O0A H9Y sing 148 n n F13 C0Y H9Y sing 149 n n C0Z C0Y H9Y sing 150 n y C0Z C0C H9Y doub 151 n y O0A C0C H9Y sing 152 n n C0Y C0X H9Y doub 153 n y C0C C0V H9Y sing 154 n y C0X N0W H9Y sing 155 n y C0V N0W H9Y sing 156 n y C0V C10 H9Y doub 157 n y N0W C11 H9Y sing 158 n y C10 C14 H9Y sing 159 n y C11 C14 H9Y doub 160 n y C14 C16 H9Y sing 161 n n C16 N19 H9Y trip 162 n n C00 H1 H9Y sing 163 n n C02 H2 H9Y sing 164 n n C03 H3 H9Y sing 165 n n C0D H4 H9Y sing 166 n n C0D H5 H9Y sing 167 n n C0E H6 H9Y sing 168 n n C0E H7 H9Y sing 169 n n C0O H8 H9Y sing 170 n n C0P H9 H9Y sing 171 n n C0X H10 H9Y sing 172 n n C0Z H11 H9Y sing 173 n n C10 H12 H9Y sing 174 n n C11 H13 H9Y sing 175 n n N0M H14 H9Y sing 176 n n # _atom_sites.entry_id 6DTW _atom_sites.fract_transf_matrix[1][1] 0.006162 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001031 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 H9Y A 1 601 1 H9Y 578 . D 4 MG A 1 602 1 MG MG . E 5 SO4 A 1 603 1 SO4 SO4 . F 6 HOH A 1 701 9 HOH HOH . F 6 HOH A 2 702 28 HOH HOH . F 6 HOH A 3 703 20 HOH HOH . F 6 HOH A 4 704 22 HOH HOH . F 6 HOH A 5 705 6 HOH HOH . F 6 HOH A 6 706 14 HOH HOH . F 6 HOH A 7 707 10 HOH HOH . F 6 HOH A 8 708 19 HOH HOH . F 6 HOH A 9 709 2 HOH HOH . F 6 HOH A 10 710 1 HOH HOH . F 6 HOH A 11 711 17 HOH HOH . F 6 HOH A 12 712 4 HOH HOH . F 6 HOH A 13 713 27 HOH HOH . F 6 HOH A 14 714 15 HOH HOH . F 6 HOH A 15 715 21 HOH HOH . F 6 HOH A 16 716 16 HOH HOH . F 6 HOH A 17 717 23 HOH HOH . F 6 HOH A 18 718 30 HOH HOH . F 6 HOH A 19 719 26 HOH HOH . G 6 HOH B 1 501 31 HOH HOH . G 6 HOH B 2 502 11 HOH HOH . G 6 HOH B 3 503 3 HOH HOH . G 6 HOH B 4 504 8 HOH HOH . G 6 HOH B 5 505 12 HOH HOH . G 6 HOH B 6 506 7 HOH HOH . G 6 HOH B 7 507 25 HOH HOH . G 6 HOH B 8 508 5 HOH HOH . G 6 HOH B 9 509 13 HOH HOH . G 6 HOH B 10 510 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N19 H9Y . . . C 3 192.476 -28.547 147.735 1 76.44 ? N19 H9Y 601 A 1 HETATM 2 C C16 H9Y . . . C 3 192.956 -27.787 147.013 1 71.26 ? C16 H9Y 601 A 1 HETATM 3 C C00 H9Y . . . C 3 199.122 -26.03 140.299 1 58.67 ? C00 H9Y 601 A 1 HETATM 4 C C01 H9Y . . . C 3 200.257 -25.439 140.894 1 68.42 ? C01 H9Y 601 A 1 HETATM 5 C C02 H9Y . . . C 3 200.281 -25.193 142.286 1 64.59 ? C02 H9Y 601 A 1 HETATM 6 C C03 H9Y . . . C 3 199.171 -25.537 143.086 1 57.85 ? C03 H9Y 601 A 1 HETATM 7 C C04 H9Y . . . C 3 198.03 -26.131 142.49 1 56.07 ? C04 H9Y 601 A 1 HETATM 8 C C05 H9Y . . . C 3 197.993 -26.383 141.096 1 59.16 ? C05 H9Y 601 A 1 HETATM 9 C C0C H9Y . . . C 3 195.975 -25.558 143.618 1 62.54 ? C0C H9Y 601 A 1 HETATM 10 C C0D H9Y . . . C 3 196.691 -27.177 139.205 1 69.86 ? C0D H9Y 601 A 1 HETATM 11 C C0E H9Y . . . C 3 195.524 -28.159 138.956 1 69.5 ? C0E H9Y 601 A 1 HETATM 12 C C0K H9Y . . . C 3 196.785 -30.324 138.792 1 72.21 ? C0K H9Y 601 A 1 HETATM 13 C C0N H9Y . . . C 3 196.275 -32.141 140.34 1 78.43 ? C0N H9Y 601 A 1 HETATM 14 C C0O H9Y . . . C 3 195.259 -31.285 140.962 1 72.94 ? C0O H9Y 601 A 1 HETATM 15 C C0P H9Y . . . C 3 195.059 -30.028 140.484 1 72.64 ? C0P H9Y 601 A 1 HETATM 16 C C0V H9Y . . . C 3 194.998 -25.97 144.575 1 61.54 ? C0V H9Y 601 A 1 HETATM 17 C C0X H9Y . . . C 3 193.97 -23.731 144.39 1 68.84 ? C0X H9Y 601 A 1 HETATM 18 C C0Y H9Y . . . C 3 194.877 -23.311 143.484 1 63.74 ? C0Y H9Y 601 A 1 HETATM 19 C C0Z H9Y . . . C 3 195.908 -24.241 143.083 1 68.48 ? C0Z H9Y 601 A 1 HETATM 20 C C10 H9Y . . . C 3 194.705 -27.135 145.332 1 64.19 ? C10 H9Y 601 A 1 HETATM 21 C C11 H9Y . . . C 3 193.171 -25.544 145.835 1 74.78 ? C11 H9Y 601 A 1 HETATM 22 C C14 H9Y . . . C 3 193.553 -26.826 146.109 1 68.96 ? C14 H9Y 601 A 1 HETATM 23 F F07 H9Y . . . C 3 201.318 -25.111 140.124 1 90.14 ? F07 H9Y 601 A 1 HETATM 24 F F13 H9Y . . . C 3 194.856 -22.084 142.955 1 70.66 ? F13 H9Y 601 A 1 HETATM 25 N N0H H9Y . . . C 3 195.826 -29.54 139.392 1 68.89 ? N0H H9Y 601 A 1 HETATM 26 N N0M H9Y . . . C 3 196.943 -31.572 139.308 1 79 ? N0M H9Y 601 A 1 HETATM 27 N N0W H9Y . . . C 3 194.042 -25.012 144.904 1 68.53 ? N0W H9Y 601 A 1 HETATM 28 O O0A H9Y . . . C 3 196.943 -26.471 143.259 1 59.28 ? O0A H9Y 601 A 1 HETATM 29 O O0B H9Y . . . C 3 196.841 -26.966 140.606 1 67.78 ? O0B H9Y 601 A 1 HETATM 30 O O0Q H9Y . . . C 3 197.479 -29.959 137.846 1 69.2 ? O0Q H9Y 601 A 1 HETATM 31 O O0S H9Y . . . C 3 196.525 -33.288 140.703 1 97.77 ? O0S H9Y 601 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #