data_6DTX # _model_server_result.job_id C2H3AQVmxx6SLV9l6FOZCw _model_server_result.datetime_utc '2024-11-07 14:37:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dtx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6DTX # _exptl.entry_id 6DTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.357 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-6-fluoroindolizine-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.2 _cell.angle_gamma 90 _cell.entry_id 6DTX _cell.length_a 223.166 _cell.length_b 69.289 _cell.length_c 104.625 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H14 F2 N4 O4' _chem_comp.formula_weight 424.357 _chem_comp.id H9Y _chem_comp.mon_nstd_flag . _chem_comp.name 8-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-6-fluoroindolizine-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O0Q C0K H9Y doub 142 n n C0K N0M H9Y sing 143 n n C0K N0H H9Y sing 144 n n C0E C0D H9Y sing 145 n n C0E N0H H9Y sing 146 n n C0D O0B H9Y sing 147 n n N0M C0N H9Y sing 148 n n N0H C0P H9Y sing 149 n n F07 C01 H9Y sing 150 n n C00 C01 H9Y doub 151 n y C00 C05 H9Y sing 152 n y C0N O0S H9Y doub 153 n n C0N C0O H9Y sing 154 n n C0P C0O H9Y doub 155 n n O0B C05 H9Y sing 156 n n C01 C02 H9Y sing 157 n y C05 C04 H9Y doub 158 n y C02 C03 H9Y doub 159 n y C04 C03 H9Y sing 160 n y C04 O0A H9Y sing 161 n n F13 C0Y H9Y sing 162 n n C0Z C0Y H9Y sing 163 n y C0Z C0C H9Y doub 164 n y O0A C0C H9Y sing 165 n n C0Y C0X H9Y doub 166 n y C0C C0V H9Y sing 167 n y C0X N0W H9Y sing 168 n y C0V N0W H9Y sing 169 n y C0V C10 H9Y doub 170 n y N0W C11 H9Y sing 171 n y C10 C14 H9Y sing 172 n y C11 C14 H9Y doub 173 n y C14 C16 H9Y sing 174 n n C16 N19 H9Y trip 175 n n C00 H1 H9Y sing 176 n n C02 H2 H9Y sing 177 n n C03 H3 H9Y sing 178 n n C0D H4 H9Y sing 179 n n C0D H5 H9Y sing 180 n n C0E H6 H9Y sing 181 n n C0E H7 H9Y sing 182 n n C0O H8 H9Y sing 183 n n C0P H9 H9Y sing 184 n n C0X H10 H9Y sing 185 n n C0Z H11 H9Y sing 186 n n C10 H12 H9Y sing 187 n n C11 H13 H9Y sing 188 n n N0M H14 H9Y sing 189 n n # _atom_sites.entry_id 6DTX _atom_sites.fract_transf_matrix[1][1] 0.004481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001302 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 H9Y A 1 601 178 H9Y 578 . D 4 GOL B 1 501 501 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N19 H9Y . . . C 3 272.678 -24.634 29.403 1 113.72 ? N19 H9Y 601 A 1 HETATM 2 C C16 H9Y . . . C 3 272.121 -24.152 28.514 1 109.89 ? C16 H9Y 601 A 1 HETATM 3 C C00 H9Y . . . C 3 268.565 -24.781 20.033 1 103.63 ? C00 H9Y 601 A 1 HETATM 4 C C01 H9Y . . . C 3 269.37 -24.153 19.053 1 98.26 ? C01 H9Y 601 A 1 HETATM 5 C C02 H9Y . . . C 3 270.59 -23.547 19.425 1 78.55 ? C02 H9Y 601 A 1 HETATM 6 C C03 H9Y . . . C 3 271.01 -23.56 20.772 1 76.13 ? C03 H9Y 601 A 1 HETATM 7 C C04 H9Y . . . C 3 270.208 -24.191 21.756 1 92.76 ? C04 H9Y 601 A 1 HETATM 8 C C05 H9Y . . . C 3 268.976 -24.803 21.401 1 106.29 ? C05 H9Y 601 A 1 HETATM 9 C C0C H9Y . . . C 3 270.195 -23.201 23.931 1 107.83 ? C0C H9Y 601 A 1 HETATM 10 C C0D H9Y . . . C 3 267.004 -26.02 22.165 1 110.03 ? C0D H9Y 601 A 1 HETATM 11 C C0E H9Y . . . C 3 266.74 -27.13 23.21 1 96.99 ? C0E H9Y 601 A 1 HETATM 12 C C0K H9Y . . . C 3 267.334 -29.155 21.827 1 129 ? C0K H9Y 601 A 1 HETATM 13 C C0N H9Y . . . C 3 268.942 -30.777 22.688 1 163.28 ? C0N H9Y 601 A 1 HETATM 14 C C0O H9Y . . . C 3 269.072 -29.955 23.899 1 134.44 ? C0O H9Y 601 A 1 HETATM 15 C C0P H9Y . . . C 3 268.351 -28.807 24.011 1 94.68 ? C0P H9Y 601 A 1 HETATM 16 C C0V H9Y . . . C 3 270.616 -23.253 25.297 1 98.49 ? C0V H9Y 601 A 1 HETATM 17 C C0X H9Y . . . C 3 269.349 -21.172 25.7 1 115.5 ? C0X H9Y 601 A 1 HETATM 18 C C0Y H9Y . . . C 3 268.931 -21.092 24.418 1 116.4 ? C0Y H9Y 601 A 1 HETATM 19 C C0Z H9Y . . . C 3 269.36 -22.129 23.506 1 111.84 ? C0Z H9Y 601 A 1 HETATM 20 C C10 H9Y . . . C 3 271.413 -24.105 26.105 1 94.43 ? C10 H9Y 601 A 1 HETATM 21 C C11 H9Y . . . C 3 270.649 -22.404 27.391 1 101.6 ? C11 H9Y 601 A 1 HETATM 22 C C14 H9Y . . . C 3 271.411 -23.537 27.411 1 100.71 ? C14 H9Y 601 A 1 HETATM 23 F F07 H9Y . . . C 3 268.97 -24.135 17.761 1 115.75 ? F07 H9Y 601 A 1 HETATM 24 F F13 H9Y . . . C 3 268.146 -20.104 23.969 1 113.56 ? F13 H9Y 601 A 1 HETATM 25 N N0H H9Y . . . C 3 267.474 -28.396 22.971 1 100.47 ? N0H H9Y 601 A 1 HETATM 26 N N0M H9Y . . . C 3 268.077 -30.291 21.765 1 156.02 ? N0M H9Y 601 A 1 HETATM 27 N N0W H9Y . . . C 3 270.159 -22.216 26.11 1 100.9 ? N0W H9Y 601 A 1 HETATM 28 O O0A H9Y . . . C 3 270.611 -24.198 23.069 1 109.26 ? O0A H9Y 601 A 1 HETATM 29 O O0B H9Y . . . C 3 268.257 -25.393 22.427 1 122.25 ? O0B H9Y 601 A 1 HETATM 30 O O0Q H9Y . . . C 3 266.595 -28.862 20.89 1 122.93 ? O0Q H9Y 601 A 1 HETATM 31 O O0S H9Y . . . C 3 269.551 -31.827 22.497 1 175.84 ? O0S H9Y 601 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #