data_6DVO # _model_server_result.job_id 0ZpdrgR2JS5pb_3wJ2stPw _model_server_result.datetime_utc '2025-01-10 15:48:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":810}' # _entry.id 6DVO # _exptl.entry_id 6DVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6DVO _cell.length_a 97.23 _cell.length_b 97.23 _cell.length_c 78.9 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 176 A ASP 610 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc2 A OD1 ASP 176 A ASP 610 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc3 A OD1 ASP 178 A ASP 612 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc4 A O ASP 178 A ASP 612 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc5 A ND1 HIS 180 A HIS 614 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc6 A O HIS 180 A HIS 614 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc7 A O PHE 189 A PHE 623 1_555 D K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc8 A O ASP 192 A ASP 626 1_555 D K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc9 A O VAL 195 A VAL 629 1_555 D K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc10 A OG SER 199 A SER 633 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc11 A O LEU 200 A LEU 634 1_555 C K K . A K 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc12 A O TYR 228 A TYR 662 1_555 D K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc13 A OD2 ASP 271 A ASP 705 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc14 B ZN ZN . A ZN 801 1_555 F N02 HBV . A HBV 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc15 B ZN ZN . A ZN 801 1_555 F O02 HBV . A HBV 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc16 B ZN ZN . A ZN 801 1_555 F O01 HBV . A HBV 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc17 D K K . A K 803 1_555 O O HOH . A HOH 962 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.18 ? metalc ? metalc18 D K K . A K 803 1_555 O O HOH . A HOH 967 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6DVO _atom_sites.fract_transf_matrix[1][1] 0.010285 _atom_sites.fract_transf_matrix[1][2] 0.005938 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 1 ZN ZN . C 3 K A 1 802 1 K K . D 3 K A 1 803 2 K K . E 4 PRO A 1 804 1 PRO PRO . F 5 HBV A 1 805 1 HBV BVS . G 6 EDO A 1 806 1 EDO EDO . H 6 EDO A 1 807 2 EDO EDO . I 6 EDO A 1 808 3 EDO EDO . J 6 EDO A 1 809 4 EDO EDO . K 6 EDO A 1 810 5 EDO EDO . L 6 EDO A 1 811 7 EDO EDO . M 6 EDO A 1 812 9 EDO EDO . N 6 EDO A 1 813 10 EDO EDO . O 7 HOH A 1 901 168 HOH HOH . O 7 HOH A 2 902 82 HOH HOH . O 7 HOH A 3 903 147 HOH HOH . O 7 HOH A 4 904 172 HOH HOH . O 7 HOH A 5 905 33 HOH HOH . O 7 HOH A 6 906 52 HOH HOH . O 7 HOH A 7 907 138 HOH HOH . O 7 HOH A 8 908 51 HOH HOH . O 7 HOH A 9 909 15 HOH HOH . O 7 HOH A 10 910 62 HOH HOH . O 7 HOH A 11 911 31 HOH HOH . O 7 HOH A 12 912 23 HOH HOH . O 7 HOH A 13 913 209 HOH HOH . O 7 HOH A 14 914 35 HOH HOH . O 7 HOH A 15 915 143 HOH HOH . O 7 HOH A 16 916 173 HOH HOH . O 7 HOH A 17 917 5 HOH HOH . O 7 HOH A 18 918 46 HOH HOH . O 7 HOH A 19 919 118 HOH HOH . O 7 HOH A 20 920 27 HOH HOH . O 7 HOH A 21 921 49 HOH HOH . O 7 HOH A 22 922 96 HOH HOH . O 7 HOH A 23 923 166 HOH HOH . O 7 HOH A 24 924 203 HOH HOH . O 7 HOH A 25 925 97 HOH HOH . O 7 HOH A 26 926 104 HOH HOH . O 7 HOH A 27 927 61 HOH HOH . O 7 HOH A 28 928 26 HOH HOH . O 7 HOH A 29 929 8 HOH HOH . O 7 HOH A 30 930 30 HOH HOH . O 7 HOH A 31 931 207 HOH HOH . O 7 HOH A 32 932 107 HOH HOH . O 7 HOH A 33 933 161 HOH HOH . O 7 HOH A 34 934 110 HOH HOH . O 7 HOH A 35 935 75 HOH HOH . O 7 HOH A 36 936 21 HOH HOH . O 7 HOH A 37 937 132 HOH HOH . O 7 HOH A 38 938 124 HOH HOH . O 7 HOH A 39 939 13 HOH HOH . O 7 HOH A 40 940 225 HOH HOH . O 7 HOH A 41 941 102 HOH HOH . O 7 HOH A 42 942 126 HOH HOH . O 7 HOH A 43 943 194 HOH HOH . O 7 HOH A 44 944 55 HOH HOH . O 7 HOH A 45 945 123 HOH HOH . O 7 HOH A 46 946 58 HOH HOH . O 7 HOH A 47 947 9 HOH HOH . O 7 HOH A 48 948 86 HOH HOH . O 7 HOH A 49 949 64 HOH HOH . O 7 HOH A 50 950 14 HOH HOH . O 7 HOH A 51 951 89 HOH HOH . O 7 HOH A 52 952 165 HOH HOH . O 7 HOH A 53 953 10 HOH HOH . O 7 HOH A 54 954 198 HOH HOH . O 7 HOH A 55 955 134 HOH HOH . O 7 HOH A 56 956 71 HOH HOH . O 7 HOH A 57 957 20 HOH HOH . O 7 HOH A 58 958 25 HOH HOH . O 7 HOH A 59 959 220 HOH HOH . O 7 HOH A 60 960 179 HOH HOH . O 7 HOH A 61 961 48 HOH HOH . O 7 HOH A 62 962 22 HOH HOH . O 7 HOH A 63 963 36 HOH HOH . O 7 HOH A 64 964 28 HOH HOH . O 7 HOH A 65 965 98 HOH HOH . O 7 HOH A 66 966 69 HOH HOH . O 7 HOH A 67 967 11 HOH HOH . O 7 HOH A 68 968 131 HOH HOH . O 7 HOH A 69 969 19 HOH HOH . O 7 HOH A 70 970 54 HOH HOH . O 7 HOH A 71 971 145 HOH HOH . O 7 HOH A 72 972 6 HOH HOH . O 7 HOH A 73 973 222 HOH HOH . O 7 HOH A 74 974 1 HOH HOH . O 7 HOH A 75 975 83 HOH HOH . O 7 HOH A 76 976 17 HOH HOH . O 7 HOH A 77 977 120 HOH HOH . O 7 HOH A 78 978 125 HOH HOH . O 7 HOH A 79 979 136 HOH HOH . O 7 HOH A 80 980 16 HOH HOH . O 7 HOH A 81 981 37 HOH HOH . O 7 HOH A 82 982 63 HOH HOH . O 7 HOH A 83 983 181 HOH HOH . O 7 HOH A 84 984 4 HOH HOH . O 7 HOH A 85 985 38 HOH HOH . O 7 HOH A 86 986 74 HOH HOH . O 7 HOH A 87 987 141 HOH HOH . O 7 HOH A 88 988 130 HOH HOH . O 7 HOH A 89 989 41 HOH HOH . O 7 HOH A 90 990 77 HOH HOH . O 7 HOH A 91 991 99 HOH HOH . O 7 HOH A 92 992 87 HOH HOH . O 7 HOH A 93 993 148 HOH HOH . O 7 HOH A 94 994 43 HOH HOH . O 7 HOH A 95 995 193 HOH HOH . O 7 HOH A 96 996 100 HOH HOH . O 7 HOH A 97 997 56 HOH HOH . O 7 HOH A 98 998 204 HOH HOH . O 7 HOH A 99 999 122 HOH HOH . O 7 HOH A 100 1000 150 HOH HOH . O 7 HOH A 101 1001 34 HOH HOH . O 7 HOH A 102 1002 115 HOH HOH . O 7 HOH A 103 1003 151 HOH HOH . O 7 HOH A 104 1004 12 HOH HOH . O 7 HOH A 105 1005 121 HOH HOH . O 7 HOH A 106 1006 7 HOH HOH . O 7 HOH A 107 1007 85 HOH HOH . O 7 HOH A 108 1008 215 HOH HOH . O 7 HOH A 109 1009 210 HOH HOH . O 7 HOH A 110 1010 216 HOH HOH . O 7 HOH A 111 1011 73 HOH HOH . O 7 HOH A 112 1012 2 HOH HOH . O 7 HOH A 113 1013 221 HOH HOH . O 7 HOH A 114 1014 113 HOH HOH . O 7 HOH A 115 1015 29 HOH HOH . O 7 HOH A 116 1016 18 HOH HOH . O 7 HOH A 117 1017 112 HOH HOH . O 7 HOH A 118 1018 66 HOH HOH . O 7 HOH A 119 1019 81 HOH HOH . O 7 HOH A 120 1020 93 HOH HOH . O 7 HOH A 121 1021 24 HOH HOH . O 7 HOH A 122 1022 128 HOH HOH . O 7 HOH A 123 1023 42 HOH HOH . O 7 HOH A 124 1024 78 HOH HOH . O 7 HOH A 125 1025 157 HOH HOH . O 7 HOH A 126 1026 114 HOH HOH . O 7 HOH A 127 1027 101 HOH HOH . O 7 HOH A 128 1028 187 HOH HOH . O 7 HOH A 129 1029 142 HOH HOH . O 7 HOH A 130 1030 117 HOH HOH . O 7 HOH A 131 1031 171 HOH HOH . O 7 HOH A 132 1032 206 HOH HOH . O 7 HOH A 133 1033 92 HOH HOH . O 7 HOH A 134 1034 3 HOH HOH . O 7 HOH A 135 1035 32 HOH HOH . O 7 HOH A 136 1036 201 HOH HOH . O 7 HOH A 137 1037 72 HOH HOH . O 7 HOH A 138 1038 106 HOH HOH . O 7 HOH A 139 1039 160 HOH HOH . O 7 HOH A 140 1040 162 HOH HOH . O 7 HOH A 141 1041 105 HOH HOH . O 7 HOH A 142 1042 65 HOH HOH . O 7 HOH A 143 1043 91 HOH HOH . O 7 HOH A 144 1044 189 HOH HOH . O 7 HOH A 145 1045 190 HOH HOH . O 7 HOH A 146 1046 95 HOH HOH . O 7 HOH A 147 1047 129 HOH HOH . O 7 HOH A 148 1048 183 HOH HOH . O 7 HOH A 149 1049 224 HOH HOH . O 7 HOH A 150 1050 133 HOH HOH . O 7 HOH A 151 1051 135 HOH HOH . O 7 HOH A 152 1052 76 HOH HOH . O 7 HOH A 153 1053 175 HOH HOH . O 7 HOH A 154 1054 109 HOH HOH . O 7 HOH A 155 1055 40 HOH HOH . O 7 HOH A 156 1056 199 HOH HOH . O 7 HOH A 157 1057 116 HOH HOH . O 7 HOH A 158 1058 50 HOH HOH . O 7 HOH A 159 1059 146 HOH HOH . O 7 HOH A 160 1060 180 HOH HOH . O 7 HOH A 161 1061 119 HOH HOH . O 7 HOH A 162 1062 60 HOH HOH . O 7 HOH A 163 1063 68 HOH HOH . O 7 HOH A 164 1064 170 HOH HOH . O 7 HOH A 165 1065 59 HOH HOH . O 7 HOH A 166 1066 167 HOH HOH . O 7 HOH A 167 1067 153 HOH HOH . O 7 HOH A 168 1068 139 HOH HOH . O 7 HOH A 169 1069 214 HOH HOH . O 7 HOH A 170 1070 185 HOH HOH . O 7 HOH A 171 1071 217 HOH HOH . O 7 HOH A 172 1072 137 HOH HOH . O 7 HOH A 173 1073 57 HOH HOH . O 7 HOH A 174 1074 149 HOH HOH . O 7 HOH A 175 1075 176 HOH HOH . O 7 HOH A 176 1076 169 HOH HOH . O 7 HOH A 177 1077 90 HOH HOH . O 7 HOH A 178 1078 144 HOH HOH . O 7 HOH A 179 1079 47 HOH HOH . O 7 HOH A 180 1080 223 HOH HOH . O 7 HOH A 181 1081 103 HOH HOH . O 7 HOH A 182 1082 177 HOH HOH . O 7 HOH A 183 1083 156 HOH HOH . O 7 HOH A 184 1084 219 HOH HOH . O 7 HOH A 185 1085 212 HOH HOH . O 7 HOH A 186 1086 202 HOH HOH . O 7 HOH A 187 1087 197 HOH HOH . O 7 HOH A 188 1088 213 HOH HOH . O 7 HOH A 189 1089 108 HOH HOH . O 7 HOH A 190 1090 140 HOH HOH . O 7 HOH A 191 1091 53 HOH HOH . O 7 HOH A 192 1092 111 HOH HOH . O 7 HOH A 193 1093 67 HOH HOH . O 7 HOH A 194 1094 152 HOH HOH . O 7 HOH A 195 1095 211 HOH HOH . O 7 HOH A 196 1096 184 HOH HOH . O 7 HOH A 197 1097 45 HOH HOH . O 7 HOH A 198 1098 200 HOH HOH . O 7 HOH A 199 1099 196 HOH HOH . O 7 HOH A 200 1100 80 HOH HOH . O 7 HOH A 201 1101 205 HOH HOH . O 7 HOH A 202 1102 174 HOH HOH . O 7 HOH A 203 1103 94 HOH HOH . O 7 HOH A 204 1104 155 HOH HOH . O 7 HOH A 205 1105 218 HOH HOH . O 7 HOH A 206 1106 178 HOH HOH . O 7 HOH A 207 1107 154 HOH HOH . O 7 HOH A 208 1108 208 HOH HOH . O 7 HOH A 209 1109 70 HOH HOH . O 7 HOH A 210 1110 88 HOH HOH . O 7 HOH A 211 1111 191 HOH HOH . O 7 HOH A 212 1112 188 HOH HOH . O 7 HOH A 213 1113 182 HOH HOH . O 7 HOH A 214 1114 164 HOH HOH . O 7 HOH A 215 1115 127 HOH HOH . O 7 HOH A 216 1116 158 HOH HOH . O 7 HOH A 217 1117 84 HOH HOH . O 7 HOH A 218 1118 159 HOH HOH . O 7 HOH A 219 1119 186 HOH HOH . O 7 HOH A 220 1120 195 HOH HOH . O 7 HOH A 221 1121 192 HOH HOH . O 7 HOH A 222 1122 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 6 -33.392 -19.899 16.914 1 37.52 ? C1 EDO 810 A 1 HETATM 2 O O1 EDO . . . K 6 -32.246 -20.155 16.103 1 37.44 ? O1 EDO 810 A 1 HETATM 3 C C2 EDO . . . K 6 -34.557 -19.479 16.033 1 37.2 ? C2 EDO 810 A 1 HETATM 4 O O2 EDO . . . K 6 -35.726 -19.34 16.848 1 36.84 ? O2 EDO 810 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #