data_6DVS # _model_server_result.job_id iKPuQFqGPo1W2aG-I7HhPQ _model_server_result.datetime_utc '2024-11-22 19:21:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":510}' # _entry.id 6DVS # _exptl.entry_id 6DVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6DVS _cell.length_a 74.639 _cell.length_b 74.639 _cell.length_c 149.948 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 49.982667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 6DVS _atom_sites.fract_transf_matrix[1][1] 0.013398 _atom_sites.fract_transf_matrix[1][2] 0.007735 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 6920 SO4 SO4 . C 2 SO4 A 1 502 6921 SO4 SO4 . D 2 SO4 A 1 503 6922 SO4 SO4 . E 2 SO4 A 1 504 6925 SO4 SO4 . F 2 SO4 A 1 505 6926 SO4 SO4 . G 2 SO4 A 1 506 6927 SO4 SO4 . H 3 EDO A 1 507 3318 EDO EDO . I 3 EDO A 1 508 3319 EDO EDO . J 3 EDO A 1 509 3321 EDO EDO . K 3 EDO A 1 510 3327 EDO EDO . L 3 EDO A 1 511 3328 EDO EDO . M 3 EDO A 1 512 3331 EDO EDO . N 3 EDO A 1 513 3332 EDO EDO . O 3 EDO A 1 514 3333 EDO EDO . P 3 EDO A 1 515 3336 EDO EDO . Q 3 EDO A 1 516 3337 EDO EDO . R 3 EDO A 1 517 3338 EDO EDO . S 4 TRS A 1 518 1 TRS TRS . T 5 PO4 A 1 519 2 PO4 PO4 . U 6 ACT A 1 520 1 ACT ACT . V 7 HOH A 1 601 310 HOH HOH . V 7 HOH A 2 602 190 HOH HOH . V 7 HOH A 3 603 275 HOH HOH . V 7 HOH A 4 604 343 HOH HOH . V 7 HOH A 5 605 56 HOH HOH . V 7 HOH A 6 606 400 HOH HOH . V 7 HOH A 7 607 113 HOH HOH . V 7 HOH A 8 608 304 HOH HOH . V 7 HOH A 9 609 442 HOH HOH . V 7 HOH A 10 610 278 HOH HOH . V 7 HOH A 11 611 438 HOH HOH . V 7 HOH A 12 612 435 HOH HOH . V 7 HOH A 13 613 407 HOH HOH . V 7 HOH A 14 614 285 HOH HOH . V 7 HOH A 15 615 257 HOH HOH . V 7 HOH A 16 616 358 HOH HOH . V 7 HOH A 17 617 277 HOH HOH . V 7 HOH A 18 618 255 HOH HOH . V 7 HOH A 19 619 395 HOH HOH . V 7 HOH A 20 620 221 HOH HOH . V 7 HOH A 21 621 381 HOH HOH . V 7 HOH A 22 622 390 HOH HOH . V 7 HOH A 23 623 220 HOH HOH . V 7 HOH A 24 624 428 HOH HOH . V 7 HOH A 25 625 266 HOH HOH . V 7 HOH A 26 626 388 HOH HOH . V 7 HOH A 27 627 42 HOH HOH . V 7 HOH A 28 628 411 HOH HOH . V 7 HOH A 29 629 19 HOH HOH . V 7 HOH A 30 630 77 HOH HOH . V 7 HOH A 31 631 327 HOH HOH . V 7 HOH A 32 632 269 HOH HOH . V 7 HOH A 33 633 134 HOH HOH . V 7 HOH A 34 634 369 HOH HOH . V 7 HOH A 35 635 117 HOH HOH . V 7 HOH A 36 636 334 HOH HOH . V 7 HOH A 37 637 62 HOH HOH . V 7 HOH A 38 638 52 HOH HOH . V 7 HOH A 39 639 121 HOH HOH . V 7 HOH A 40 640 307 HOH HOH . V 7 HOH A 41 641 37 HOH HOH . V 7 HOH A 42 642 292 HOH HOH . V 7 HOH A 43 643 22 HOH HOH . V 7 HOH A 44 644 215 HOH HOH . V 7 HOH A 45 645 43 HOH HOH . V 7 HOH A 46 646 99 HOH HOH . V 7 HOH A 47 647 364 HOH HOH . V 7 HOH A 48 648 46 HOH HOH . V 7 HOH A 49 649 25 HOH HOH . V 7 HOH A 50 650 429 HOH HOH . V 7 HOH A 51 651 5 HOH HOH . V 7 HOH A 52 652 49 HOH HOH . V 7 HOH A 53 653 109 HOH HOH . V 7 HOH A 54 654 8 HOH HOH . V 7 HOH A 55 655 144 HOH HOH . V 7 HOH A 56 656 91 HOH HOH . V 7 HOH A 57 657 83 HOH HOH . V 7 HOH A 58 658 85 HOH HOH . V 7 HOH A 59 659 11 HOH HOH . V 7 HOH A 60 660 265 HOH HOH . V 7 HOH A 61 661 48 HOH HOH . V 7 HOH A 62 662 136 HOH HOH . V 7 HOH A 63 663 20 HOH HOH . V 7 HOH A 64 664 35 HOH HOH . V 7 HOH A 65 665 34 HOH HOH . V 7 HOH A 66 666 27 HOH HOH . V 7 HOH A 67 667 186 HOH HOH . V 7 HOH A 68 668 12 HOH HOH . V 7 HOH A 69 669 135 HOH HOH . V 7 HOH A 70 670 139 HOH HOH . V 7 HOH A 71 671 425 HOH HOH . V 7 HOH A 72 672 63 HOH HOH . V 7 HOH A 73 673 111 HOH HOH . V 7 HOH A 74 674 163 HOH HOH . V 7 HOH A 75 675 272 HOH HOH . V 7 HOH A 76 676 40 HOH HOH . V 7 HOH A 77 677 260 HOH HOH . V 7 HOH A 78 678 55 HOH HOH . V 7 HOH A 79 679 51 HOH HOH . V 7 HOH A 80 680 65 HOH HOH . V 7 HOH A 81 681 108 HOH HOH . V 7 HOH A 82 682 249 HOH HOH . V 7 HOH A 83 683 181 HOH HOH . V 7 HOH A 84 684 396 HOH HOH . V 7 HOH A 85 685 146 HOH HOH . V 7 HOH A 86 686 17 HOH HOH . V 7 HOH A 87 687 9 HOH HOH . V 7 HOH A 88 688 284 HOH HOH . V 7 HOH A 89 689 24 HOH HOH . V 7 HOH A 90 690 251 HOH HOH . V 7 HOH A 91 691 413 HOH HOH . V 7 HOH A 92 692 366 HOH HOH . V 7 HOH A 93 693 301 HOH HOH . V 7 HOH A 94 694 372 HOH HOH . V 7 HOH A 95 695 21 HOH HOH . V 7 HOH A 96 696 39 HOH HOH . V 7 HOH A 97 697 15 HOH HOH . V 7 HOH A 98 698 4 HOH HOH . V 7 HOH A 99 699 439 HOH HOH . V 7 HOH A 100 700 363 HOH HOH . V 7 HOH A 101 701 340 HOH HOH . V 7 HOH A 102 702 7 HOH HOH . V 7 HOH A 103 703 433 HOH HOH . V 7 HOH A 104 704 1 HOH HOH . V 7 HOH A 105 705 38 HOH HOH . V 7 HOH A 106 706 53 HOH HOH . V 7 HOH A 107 707 153 HOH HOH . V 7 HOH A 108 708 66 HOH HOH . V 7 HOH A 109 709 18 HOH HOH . V 7 HOH A 110 710 282 HOH HOH . V 7 HOH A 111 711 357 HOH HOH . V 7 HOH A 112 712 130 HOH HOH . V 7 HOH A 113 713 243 HOH HOH . V 7 HOH A 114 714 110 HOH HOH . V 7 HOH A 115 715 138 HOH HOH . V 7 HOH A 116 716 354 HOH HOH . V 7 HOH A 117 717 36 HOH HOH . V 7 HOH A 118 718 124 HOH HOH . V 7 HOH A 119 719 151 HOH HOH . V 7 HOH A 120 720 118 HOH HOH . V 7 HOH A 121 721 80 HOH HOH . V 7 HOH A 122 722 420 HOH HOH . V 7 HOH A 123 723 155 HOH HOH . V 7 HOH A 124 724 302 HOH HOH . V 7 HOH A 125 725 47 HOH HOH . V 7 HOH A 126 726 70 HOH HOH . V 7 HOH A 127 727 313 HOH HOH . V 7 HOH A 128 728 166 HOH HOH . V 7 HOH A 129 729 443 HOH HOH . V 7 HOH A 130 730 23 HOH HOH . V 7 HOH A 131 731 195 HOH HOH . V 7 HOH A 132 732 67 HOH HOH . V 7 HOH A 133 733 128 HOH HOH . V 7 HOH A 134 734 410 HOH HOH . V 7 HOH A 135 735 2 HOH HOH . V 7 HOH A 136 736 344 HOH HOH . V 7 HOH A 137 737 341 HOH HOH . V 7 HOH A 138 738 45 HOH HOH . V 7 HOH A 139 739 286 HOH HOH . V 7 HOH A 140 740 60 HOH HOH . V 7 HOH A 141 741 14 HOH HOH . V 7 HOH A 142 742 235 HOH HOH . V 7 HOH A 143 743 82 HOH HOH . V 7 HOH A 144 744 57 HOH HOH . V 7 HOH A 145 745 325 HOH HOH . V 7 HOH A 146 746 143 HOH HOH . V 7 HOH A 147 747 61 HOH HOH . V 7 HOH A 148 748 79 HOH HOH . V 7 HOH A 149 749 204 HOH HOH . V 7 HOH A 150 750 132 HOH HOH . V 7 HOH A 151 751 41 HOH HOH . V 7 HOH A 152 752 72 HOH HOH . V 7 HOH A 153 753 32 HOH HOH . V 7 HOH A 154 754 256 HOH HOH . V 7 HOH A 155 755 403 HOH HOH . V 7 HOH A 156 756 398 HOH HOH . V 7 HOH A 157 757 216 HOH HOH . V 7 HOH A 158 758 232 HOH HOH . V 7 HOH A 159 759 152 HOH HOH . V 7 HOH A 160 760 172 HOH HOH . V 7 HOH A 161 761 97 HOH HOH . V 7 HOH A 162 762 298 HOH HOH . V 7 HOH A 163 763 375 HOH HOH . V 7 HOH A 164 764 59 HOH HOH . V 7 HOH A 165 765 103 HOH HOH . V 7 HOH A 166 766 281 HOH HOH . V 7 HOH A 167 767 92 HOH HOH . V 7 HOH A 168 768 106 HOH HOH . V 7 HOH A 169 769 297 HOH HOH . V 7 HOH A 170 770 374 HOH HOH . V 7 HOH A 171 771 440 HOH HOH . V 7 HOH A 172 772 84 HOH HOH . V 7 HOH A 173 773 321 HOH HOH . V 7 HOH A 174 774 303 HOH HOH . V 7 HOH A 175 775 76 HOH HOH . V 7 HOH A 176 776 58 HOH HOH . V 7 HOH A 177 777 431 HOH HOH . V 7 HOH A 178 778 317 HOH HOH . V 7 HOH A 179 779 434 HOH HOH . V 7 HOH A 180 780 280 HOH HOH . V 7 HOH A 181 781 336 HOH HOH . V 7 HOH A 182 782 81 HOH HOH . V 7 HOH A 183 783 54 HOH HOH . V 7 HOH A 184 784 114 HOH HOH . V 7 HOH A 185 785 426 HOH HOH . V 7 HOH A 186 786 424 HOH HOH . V 7 HOH A 187 787 68 HOH HOH . V 7 HOH A 188 788 335 HOH HOH . V 7 HOH A 189 789 205 HOH HOH . V 7 HOH A 190 790 385 HOH HOH . V 7 HOH A 191 791 44 HOH HOH . V 7 HOH A 192 792 314 HOH HOH . V 7 HOH A 193 793 441 HOH HOH . V 7 HOH A 194 794 279 HOH HOH . V 7 HOH A 195 795 316 HOH HOH . V 7 HOH A 196 796 360 HOH HOH . V 7 HOH A 197 797 125 HOH HOH . V 7 HOH A 198 798 86 HOH HOH . V 7 HOH A 199 799 296 HOH HOH . V 7 HOH A 200 800 309 HOH HOH . V 7 HOH A 201 801 427 HOH HOH . V 7 HOH A 202 802 168 HOH HOH . V 7 HOH A 203 803 231 HOH HOH . V 7 HOH A 204 804 196 HOH HOH . V 7 HOH A 205 805 379 HOH HOH . V 7 HOH A 206 806 437 HOH HOH . V 7 HOH A 207 807 299 HOH HOH . V 7 HOH A 208 808 78 HOH HOH . V 7 HOH A 209 809 213 HOH HOH . V 7 HOH A 210 810 276 HOH HOH . V 7 HOH A 211 811 350 HOH HOH . V 7 HOH A 212 812 432 HOH HOH . V 7 HOH A 213 813 71 HOH HOH . V 7 HOH A 214 814 322 HOH HOH . V 7 HOH A 215 815 436 HOH HOH . V 7 HOH A 216 816 140 HOH HOH . V 7 HOH A 217 817 382 HOH HOH . V 7 HOH A 218 818 191 HOH HOH . V 7 HOH A 219 819 247 HOH HOH . V 7 HOH A 220 820 445 HOH HOH . V 7 HOH A 221 821 259 HOH HOH . V 7 HOH A 222 822 353 HOH HOH . V 7 HOH A 223 823 338 HOH HOH . V 7 HOH A 224 824 98 HOH HOH . V 7 HOH A 225 825 348 HOH HOH . V 7 HOH A 226 826 145 HOH HOH . V 7 HOH A 227 827 352 HOH HOH . V 7 HOH A 228 828 206 HOH HOH . V 7 HOH A 229 829 397 HOH HOH . V 7 HOH A 230 830 161 HOH HOH . V 7 HOH A 231 831 200 HOH HOH . V 7 HOH A 232 832 405 HOH HOH . V 7 HOH A 233 833 137 HOH HOH . V 7 HOH A 234 834 311 HOH HOH . V 7 HOH A 235 835 180 HOH HOH . V 7 HOH A 236 836 339 HOH HOH . V 7 HOH A 237 837 160 HOH HOH . V 7 HOH A 238 838 147 HOH HOH . V 7 HOH A 239 839 356 HOH HOH . V 7 HOH A 240 840 412 HOH HOH . V 7 HOH A 241 841 333 HOH HOH . V 7 HOH A 242 842 418 HOH HOH . V 7 HOH A 243 843 295 HOH HOH . V 7 HOH A 244 844 373 HOH HOH . V 7 HOH A 245 845 380 HOH HOH . V 7 HOH A 246 846 446 HOH HOH . V 7 HOH A 247 847 408 HOH HOH . V 7 HOH A 248 848 447 HOH HOH . V 7 HOH A 249 849 330 HOH HOH . V 7 HOH A 250 850 448 HOH HOH . V 7 HOH A 251 851 183 HOH HOH . V 7 HOH A 252 852 115 HOH HOH . V 7 HOH A 253 853 164 HOH HOH . V 7 HOH A 254 854 50 HOH HOH . V 7 HOH A 255 855 419 HOH HOH . V 7 HOH A 256 856 102 HOH HOH . V 7 HOH A 257 857 328 HOH HOH . V 7 HOH A 258 858 365 HOH HOH . V 7 HOH A 259 859 88 HOH HOH . V 7 HOH A 260 860 141 HOH HOH . V 7 HOH A 261 861 270 HOH HOH . V 7 HOH A 262 862 324 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 3 34.976 -20.442 31.108 1 39.28 ? C1 EDO 510 A 1 HETATM 2 O O1 EDO . . . K 3 34.542 -21.703 31.634 1 43.81 ? O1 EDO 510 A 1 HETATM 3 C C2 EDO . . . K 3 35.878 -20.665 29.9 1 47.97 ? C2 EDO 510 A 1 HETATM 4 O O2 EDO . . . K 3 35.224 -21.534 28.969 1 56.67 ? O2 EDO 510 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #