data_6DVY
#
_model_server_result.job_id            kkdZ4ecKqEEs4mXImPkDeQ 
_model_server_result.datetime_utc      '2024-12-27 00:02:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dvy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":802}' 
#
_entry.id    6DVY 
#
_exptl.entry_id    6DVY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              225.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-aminoethyl diphenylborinate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DVY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DVY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C14 H16 B N O' 
_chem_comp.formula_weight    225.094 
_chem_comp.id                FZ4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-aminoethyl diphenylborinate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C16 FZ4 sing 83 n n 
C15 O14 FZ4 sing 84 n n 
C16 N17 FZ4 sing 85 n n 
C06 C07 FZ4 doub 86 n y 
C06 C05 FZ4 sing 87 n y 
O14 B01 FZ4 sing 88 n n 
C07 C02 FZ4 sing 89 n y 
C05 C04 FZ4 doub 90 n y 
C02 B01 FZ4 sing 91 n n 
C02 C03 FZ4 doub 92 n y 
C04 C03 FZ4 sing 93 n y 
B01 C08 FZ4 sing 94 n n 
C08 C13 FZ4 doub 95 n y 
C08 C09 FZ4 sing 96 n y 
C13 C12 FZ4 sing 97 n y 
C09 C10 FZ4 doub 98 n y 
C12 C11 FZ4 doub 99 n y 
C10 C11 FZ4 sing 100 n y 
C03 H1 FZ4 sing 101 n n 
C04 H2 FZ4 sing 102 n n 
C05 H3 FZ4 sing 103 n n 
C06 H4 FZ4 sing 104 n n 
C07 H5 FZ4 sing 105 n n 
C09 H6 FZ4 sing 106 n n 
C10 H7 FZ4 sing 107 n n 
C11 H8 FZ4 sing 108 n n 
C12 H9 FZ4 sing 109 n n 
C13 H10 FZ4 sing 110 n n 
C15 H11 FZ4 sing 111 n n 
C15 H12 FZ4 sing 112 n n 
C16 H13 FZ4 sing 113 n n 
C16 H14 FZ4 sing 114 n n 
N17 H15 FZ4 sing 115 n n 
N17 H16 FZ4 sing 116 n n 
#
_atom_sites.entry_id                     6DVY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FZ4 A 1 801 1 FZ4 LIG . 
F 2 FZ4 A 1 802 2 FZ4 LIG . 
G 2 FZ4 B 1 801 3 FZ4 LIG . 
H 2 FZ4 B 1 802 4 FZ4 LIG . 
I 2 FZ4 C 1 801 5 FZ4 LIG . 
J 2 FZ4 C 1 802 6 FZ4 LIG . 
K 2 FZ4 D 1 801 7 FZ4 LIG . 
L 2 FZ4 D 1 802 8 FZ4 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 B B01 FZ4 . . . F 2 124.037 166.76 115.069 1 71.31 ? B01 FZ4 802 A 1 
HETATM 2 C C02 FZ4 . . . F 2 125.05 165.594 115.358 1 71.31 ? C02 FZ4 802 A 1 
HETATM 3 C C03 FZ4 . . . F 2 126.184 165.85 116.107 1 71.31 ? C03 FZ4 802 A 1 
HETATM 4 C C04 FZ4 . . . F 2 127.091 164.841 116.373 1 71.31 ? C04 FZ4 802 A 1 
HETATM 5 C C05 FZ4 . . . F 2 126.867 163.568 115.886 1 71.31 ? C05 FZ4 802 A 1 
HETATM 6 C C06 FZ4 . . . F 2 125.729 163.313 115.135 1 71.31 ? C06 FZ4 802 A 1 
HETATM 7 C C07 FZ4 . . . F 2 124.819 164.323 114.869 1 71.31 ? C07 FZ4 802 A 1 
HETATM 8 C C08 FZ4 . . . F 2 122.511 166.548 115.378 1 71.31 ? C08 FZ4 802 A 1 
HETATM 9 C C09 FZ4 . . . F 2 122.093 166.307 116.672 1 71.31 ? C09 FZ4 802 A 1 
HETATM 10 C C10 FZ4 . . . F 2 120.747 166.122 116.94 1 71.31 ? C10 FZ4 802 A 1 
HETATM 11 C C11 FZ4 . . . F 2 119.818 166.176 115.919 1 71.31 ? C11 FZ4 802 A 1 
HETATM 12 C C12 FZ4 . . . F 2 120.235 166.424 114.622 1 71.31 ? C12 FZ4 802 A 1 
HETATM 13 C C13 FZ4 . . . F 2 121.582 166.606 114.354 1 71.31 ? C13 FZ4 802 A 1 
HETATM 14 C C15 FZ4 . . . F 2 124.273 169.167 114.725 1 71.31 ? C15 FZ4 802 A 1 
HETATM 15 C C16 FZ4 . . . F 2 125.578 169.931 114.476 1 71.31 ? C16 FZ4 802 A 1 
HETATM 16 N N17 FZ4 . . . F 2 125.428 171.358 114.745 1 71.31 ? N17 FZ4 802 A 1 
HETATM 17 O O14 FZ4 . . . F 2 124.435 167.825 114.342 1 71.31 ? O14 FZ4 802 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           17 
#