data_6DW7 # _model_server_result.job_id a7OJ6su5fOWLG3_tUwPOZg _model_server_result.datetime_utc '2024-11-13 05:45:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":703}' # _entry.id 6DW7 # _exptl.entry_id 6DW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.67 _cell.angle_gamma 90 _cell.entry_id 6DW7 _cell.length_a 84.546 _cell.length_b 146.372 _cell.length_c 98.929 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 38 A THR 114 1_555 J NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc2 A OD2 ASP 235 A ASP 311 1_555 I NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc3 E O1G DTP . A DTP 701 1_555 K MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc4 E O1B DTP . A DTP 701 1_555 K MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc5 F MG MG . A MG 702 1_555 G O1A GTP . A GTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc6 F MG MG . A MG 702 1_555 G O1B GTP . A GTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc7 F MG MG . A MG 702 1_555 G O1G GTP . A GTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc8 F MG MG . A MG 702 1_555 M O1B DTP . B DTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc9 F MG MG . A MG 702 1_555 M O3G DTP . B DTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc10 I NA NA . A NA 705 1_555 W O HOH . A HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc11 J NA NA . A NA 706 1_555 W O HOH . A HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc12 K MG MG . B MG 701 1_555 L O2B GTP . B GTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc13 K MG MG . B MG 701 1_555 L O2A GTP . B GTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc14 K MG MG . B MG 701 1_555 L O2G GTP . B GTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.65 sing metalc ? metalc15 C O GLN 434 C GLN 510 1_555 S NA NA . C NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc16 C O LYS 436 C LYS 512 1_555 S NA NA . C NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc17 N O3G DTP . C DTP 701 1_555 O MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc18 N O2B DTP . C DTP 701 1_555 O MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc19 O MG MG . C MG 702 1_555 T O1G GTP . D GTP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc20 O MG MG . C MG 702 1_555 T O1B GTP . D GTP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc21 O MG MG . C MG 702 1_555 T O3A GTP . D GTP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc22 P MG MG . C MG 703 1_555 Q O2A GTP . C GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc23 P MG MG . C MG 703 1_555 Q O2B GTP . C GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc24 P MG MG . C MG 703 1_555 Q O2G GTP . C GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.689 sing metalc ? metalc25 P MG MG . C MG 703 1_555 U O1G DTP . D DTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc26 P MG MG . C MG 703 1_555 U O2B DTP . D DTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DW7 _atom_sites.fract_transf_matrix[1][1] 0.011828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005186 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 DTP A 1 701 800 DTP DTP . F 3 MG A 1 702 850 MG MG . G 4 GTP A 1 703 900 GTP GTP . H 5 GLY A 1 704 2 GLY GLY . I 6 NA A 1 705 2 NA NA . J 6 NA A 1 706 3 NA NA . K 3 MG B 1 701 850 MG MG . L 4 GTP B 1 702 900 GTP GTP . M 2 DTP B 1 703 800 DTP DTP . N 2 DTP C 1 701 800 DTP DTP . O 3 MG C 1 702 850 MG MG . P 3 MG C 1 703 850 MG MG . Q 4 GTP C 1 704 900 GTP GTP . R 5 GLY C 1 705 1 GLY GLY . S 6 NA C 1 706 1 NA NA . T 4 GTP D 1 701 900 GTP GTP . U 2 DTP D 1 702 800 DTP DTP . V 7 PO4 D 1 703 1 PO4 PO4 . W 8 HOH A 1 801 29 HOH HOH . W 8 HOH A 2 802 35 HOH HOH . W 8 HOH A 3 803 22 HOH HOH . W 8 HOH A 4 804 21 HOH HOH . W 8 HOH A 5 805 19 HOH HOH . W 8 HOH A 6 806 53 HOH HOH . W 8 HOH A 7 807 20 HOH HOH . W 8 HOH A 8 808 31 HOH HOH . W 8 HOH A 9 809 56 HOH HOH . W 8 HOH A 10 810 7 HOH HOH . W 8 HOH A 11 811 54 HOH HOH . W 8 HOH A 12 812 55 HOH HOH . W 8 HOH A 13 813 3 HOH HOH . W 8 HOH A 14 814 52 HOH HOH . X 8 HOH B 1 801 14 HOH HOH . X 8 HOH B 2 802 9 HOH HOH . X 8 HOH B 3 803 38 HOH HOH . X 8 HOH B 4 804 2 HOH HOH . X 8 HOH B 5 805 8 HOH HOH . X 8 HOH B 6 806 15 HOH HOH . X 8 HOH B 7 807 30 HOH HOH . X 8 HOH B 8 808 28 HOH HOH . X 8 HOH B 9 809 37 HOH HOH . X 8 HOH B 10 810 25 HOH HOH . X 8 HOH B 11 811 42 HOH HOH . X 8 HOH B 12 812 12 HOH HOH . X 8 HOH B 13 813 57 HOH HOH . X 8 HOH B 14 814 1 HOH HOH . X 8 HOH B 15 815 48 HOH HOH . X 8 HOH B 16 816 44 HOH HOH . X 8 HOH B 17 817 46 HOH HOH . X 8 HOH B 18 818 16 HOH HOH . Y 8 HOH C 1 801 4 HOH HOH . Y 8 HOH C 2 802 43 HOH HOH . Y 8 HOH C 3 803 18 HOH HOH . Y 8 HOH C 4 804 34 HOH HOH . Y 8 HOH C 5 805 32 HOH HOH . Y 8 HOH C 6 806 11 HOH HOH . Y 8 HOH C 7 807 13 HOH HOH . Y 8 HOH C 8 808 50 HOH HOH . Y 8 HOH C 9 809 17 HOH HOH . Y 8 HOH C 10 810 26 HOH HOH . Y 8 HOH C 11 811 24 HOH HOH . Y 8 HOH C 12 812 45 HOH HOH . Y 8 HOH C 13 813 49 HOH HOH . Z 8 HOH D 1 801 39 HOH HOH . Z 8 HOH D 2 802 40 HOH HOH . Z 8 HOH D 3 803 36 HOH HOH . Z 8 HOH D 4 804 51 HOH HOH . Z 8 HOH D 5 805 33 HOH HOH . Z 8 HOH D 6 806 27 HOH HOH . Z 8 HOH D 7 807 58 HOH HOH . Z 8 HOH D 8 808 60 HOH HOH . Z 8 HOH D 9 809 47 HOH HOH . Z 8 HOH D 10 810 41 HOH HOH . Z 8 HOH D 11 811 59 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 3 _atom_site.Cartn_x 33.607 _atom_site.Cartn_y -25.307 _atom_site.Cartn_z -26.151 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 703 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #