data_6DWM
#
_model_server_result.job_id            SO5xnZTn3GZlwzaqYiJEVA 
_model_server_result.datetime_utc      '2024-10-16 21:02:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dwm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":602}' 
#
_entry.id    6DWM 
#
_exptl.entry_id    6DWM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              338.397 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-{[(2E)-3,7-dimethylocta-2,6-dien-1-yl]oxy}-7H-furo[3,2-g][1]benzopyran-7-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DWM 
_cell.length_a            65.33 
_cell.length_b            194.758 
_cell.length_c            236.137 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DWM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,Q 1 1 
B,H,I,J,R 2 1 
C,K,L 3 1 
D,M,N,O,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 L N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 430 A CYS 457 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
metalc ? metalc2 B SG CYS 430 B CYS 457 1_555 H FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
#
_chem_comp.formula           'C21 H22 O4' 
_chem_comp.formula_weight    338.397 
_chem_comp.id                HJJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-{[(2E)-3,7-dimethylocta-2,6-dien-1-yl]oxy}-7H-furo[3,2-g][1]benzopyran-7-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C02 HJJ sing 348 n n 
C02 C01 HJJ sing 349 n n 
C02 C03 HJJ doub 350 n n 
C03 C04 HJJ sing 351 n n 
C04 C05 HJJ sing 352 n n 
C05 C06 HJJ sing 353 n n 
C24 C06 HJJ sing 354 n n 
C06 C07 HJJ doub 355 e n 
C07 C08 HJJ sing 356 n n 
C08 O09 HJJ sing 357 n n 
O09 C10 HJJ sing 358 n n 
C10 C20 HJJ doub 359 n y 
C10 C11 HJJ sing 360 n y 
C12 C11 HJJ sing 361 n n 
C12 C13 HJJ doub 362 n n 
C21 C20 HJJ sing 363 n y 
C21 C22 HJJ doub 364 n y 
C20 C19 HJJ sing 365 n y 
C11 C17 HJJ doub 366 n y 
C13 C14 HJJ sing 367 n n 
C22 O23 HJJ sing 368 n y 
C19 O23 HJJ sing 369 n y 
C19 C18 HJJ doub 370 n y 
C17 C18 HJJ sing 371 n y 
C17 O16 HJJ sing 372 n n 
C14 O16 HJJ sing 373 n n 
C14 O15 HJJ doub 374 n n 
C13 H131 HJJ sing 375 n n 
C21 H211 HJJ sing 376 n n 
C22 H221 HJJ sing 377 n n 
C24 H243 HJJ sing 378 n n 
C24 H242 HJJ sing 379 n n 
C24 H241 HJJ sing 380 n n 
C01 H012 HJJ sing 381 n n 
C01 H011 HJJ sing 382 n n 
C01 H013 HJJ sing 383 n n 
C03 H031 HJJ sing 384 n n 
C04 H042 HJJ sing 385 n n 
C04 H041 HJJ sing 386 n n 
C05 H051 HJJ sing 387 n n 
C05 H052 HJJ sing 388 n n 
C07 H071 HJJ sing 389 n n 
C08 H082 HJJ sing 390 n n 
C08 H081 HJJ sing 391 n n 
C12 H121 HJJ sing 392 n n 
C18 H181 HJJ sing 393 n n 
C25 H253 HJJ sing 394 n n 
C25 H252 HJJ sing 395 n n 
C25 H251 HJJ sing 396 n n 
#
_atom_sites.entry_id                     6DWM 
_atom_sites.fract_transf_matrix[1][1]    0.015307 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005135 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004235 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 601 601 HEM HEM . 
F 3 HJJ A 1 602 1 HJJ LIG . 
G 4 CPS A 1 603 1 CPS CPS . 
H 2 HEM B 1 601 601 HEM HEM . 
I 3 HJJ B 1 602 2 HJJ LIG . 
J 5 GOL B 1 603 1 GOL GOL . 
K 2 HEM C 1 601 601 HEM HEM . 
L 3 HJJ C 1 602 3 HJJ LIG . 
M 2 HEM D 1 601 601 HEM HEM . 
N 3 HJJ D 1 602 4 HJJ LIG . 
O 4 CPS D 1 603 2 CPS CPS . 
P 5 GOL D 1 604 2 GOL GOL . 
Q 6 HOH A 1 701 11 HOH HOH . 
Q 6 HOH A 2 702 3 HOH HOH . 
Q 6 HOH A 3 703 10 HOH HOH . 
Q 6 HOH A 4 704 38 HOH HOH . 
Q 6 HOH A 5 705 13 HOH HOH . 
Q 6 HOH A 6 706 23 HOH HOH . 
Q 6 HOH A 7 707 35 HOH HOH . 
Q 6 HOH A 8 708 29 HOH HOH . 
Q 6 HOH A 9 709 28 HOH HOH . 
Q 6 HOH A 10 710 34 HOH HOH . 
Q 6 HOH A 11 711 37 HOH HOH . 
Q 6 HOH A 12 712 33 HOH HOH . 
Q 6 HOH A 13 713 4 HOH HOH . 
Q 6 HOH A 14 714 42 HOH HOH . 
Q 6 HOH A 15 715 40 HOH HOH . 
Q 6 HOH A 16 716 6 HOH HOH . 
Q 6 HOH A 17 717 36 HOH HOH . 
Q 6 HOH A 18 718 30 HOH HOH . 
Q 6 HOH A 19 719 27 HOH HOH . 
R 6 HOH B 1 701 2 HOH HOH . 
R 6 HOH B 2 702 5 HOH HOH . 
R 6 HOH B 3 703 7 HOH HOH . 
R 6 HOH B 4 704 22 HOH HOH . 
R 6 HOH B 5 705 14 HOH HOH . 
R 6 HOH B 6 706 31 HOH HOH . 
R 6 HOH B 7 707 26 HOH HOH . 
R 6 HOH B 8 708 12 HOH HOH . 
R 6 HOH B 9 709 32 HOH HOH . 
R 6 HOH B 10 710 39 HOH HOH . 
R 6 HOH B 11 711 18 HOH HOH . 
R 6 HOH B 12 712 21 HOH HOH . 
R 6 HOH B 13 713 17 HOH HOH . 
R 6 HOH B 14 714 25 HOH HOH . 
R 6 HOH B 15 715 46 HOH HOH . 
R 6 HOH B 16 716 15 HOH HOH . 
R 6 HOH B 17 717 8 HOH HOH . 
R 6 HOH B 18 718 16 HOH HOH . 
R 6 HOH B 19 719 43 HOH HOH . 
R 6 HOH B 20 720 24 HOH HOH . 
R 6 HOH B 21 721 19 HOH HOH . 
R 6 HOH B 22 722 1 HOH HOH . 
R 6 HOH B 23 723 9 HOH HOH . 
R 6 HOH B 24 724 44 HOH HOH . 
R 6 HOH B 25 725 20 HOH HOH . 
R 6 HOH B 26 726 41 HOH HOH . 
R 6 HOH B 27 727 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 HJJ . . . N 3 19.807 -8.99 -62.263 1 82.69 ? C10 HJJ 602 D 1 
HETATM 2 C C13 HJJ . . . N 3 18.094 -5.688 -63.527 1 82.34 ? C13 HJJ 602 D 1 
HETATM 3 C C17 HJJ . . . N 3 20.171 -7.597 -64.315 1 82.11 ? C17 HJJ 602 D 1 
HETATM 4 C C20 HJJ . . . N 3 20.829 -9.947 -62.673 1 86.84 ? C20 HJJ 602 D 1 
HETATM 5 C C21 HJJ . . . N 3 21.412 -11.219 -62.11 1 87.19 ? C21 HJJ 602 D 1 
HETATM 6 C C22 HJJ . . . N 3 22.396 -11.673 -63.017 1 94.76 ? C22 HJJ 602 D 1 
HETATM 7 C C24 HJJ . . . N 3 17.504 -11.906 -57.301 1 77.9 ? C24 HJJ 602 D 1 
HETATM 8 C C01 HJJ . . . N 3 11.786 -10.804 -57.762 1 64.91 ? C01 HJJ 602 D 1 
HETATM 9 C C02 HJJ . . . N 3 12.402 -9.45 -57.833 1 66.1 ? C02 HJJ 602 D 1 
HETATM 10 C C03 HJJ . . . N 3 13.764 -9.309 -57.883 1 75.2 ? C03 HJJ 602 D 1 
HETATM 11 C C04 HJJ . . . N 3 14.826 -10.47 -57.872 1 67.8 ? C04 HJJ 602 D 1 
HETATM 12 C C05 HJJ . . . N 3 15.996 -10.333 -58.892 1 70.61 ? C05 HJJ 602 D 1 
HETATM 13 C C06 HJJ . . . N 3 17.338 -11.115 -58.625 1 74.3 ? C06 HJJ 602 D 1 
HETATM 14 C C07 HJJ . . . N 3 18.358 -11.126 -59.556 1 77.88 ? C07 HJJ 602 D 1 
HETATM 15 C C08 HJJ . . . N 3 18.275 -10.364 -60.912 1 75.01 ? C08 HJJ 602 D 1 
HETATM 16 C C11 HJJ . . . N 3 19.474 -7.816 -63.081 1 82.53 ? C11 HJJ 602 D 1 
HETATM 17 C C12 HJJ . . . N 3 18.424 -6.791 -62.711 1 84.11 ? C12 HJJ 602 D 1 
HETATM 18 C C14 HJJ . . . N 3 18.868 -5.482 -64.736 1 87.56 ? C14 HJJ 602 D 1 
HETATM 19 C C18 HJJ . . . N 3 21.195 -8.555 -64.725 1 84.39 ? C18 HJJ 602 D 1 
HETATM 20 C C19 HJJ . . . N 3 21.502 -9.711 -63.895 1 88.11 ? C19 HJJ 602 D 1 
HETATM 21 C C25 HJJ . . . N 3 11.488 -8.247 -57.852 1 66.32 ? C25 HJJ 602 D 1 
HETATM 22 O O09 HJJ . . . N 3 19.122 -9.204 -61.049 1 76.85 ? O09 HJJ 602 D 1 
HETATM 23 O O15 HJJ . . . N 3 18.727 -4.496 -65.481 1 89.92 ? O15 HJJ 602 D 1 
HETATM 24 O O16 HJJ . . . N 3 19.843 -6.447 -65.109 1 89.97 ? O16 HJJ 602 D 1 
HETATM 25 O O23 HJJ . . . N 3 22.424 -10.751 -64.069 1 99.38 ? O23 HJJ 602 D 1 
HETATM 26 H H131 HJJ . . . N 3 17.41 -5.089 -63.33 1 98.92 ? H131 HJJ 602 D 1 
HETATM 27 H H211 HJJ . . . N 3 21.198 -11.661 -61.32 1 104.75 ? H211 HJJ 602 D 1 
HETATM 28 H H221 HJJ . . . N 3 22.948 -12.421 -62.985 1 113.82 ? H221 HJJ 602 D 1 
HETATM 29 H H243 HJJ . . . N 3 18.228 -12.55 -57.266 1 93.6 ? H243 HJJ 602 D 1 
HETATM 30 H H242 HJJ . . . N 3 17.672 -11.384 -56.501 1 93.6 ? H242 HJJ 602 D 1 
HETATM 31 H H241 HJJ . . . N 3 16.75 -12.449 -57.021 1 93.6 ? H241 HJJ 602 D 1 
HETATM 32 H H012 HJJ . . . N 3 11.97 -11.374 -58.525 1 78 ? H012 HJJ 602 D 1 
HETATM 33 H H011 HJJ . . . N 3 12.067 -11.338 -57.002 1 78 ? H011 HJJ 602 D 1 
HETATM 34 H H013 HJJ . . . N 3 10.818 -10.807 -57.7 1 78 ? H013 HJJ 602 D 1 
HETATM 35 H H031 HJJ . . . N 3 14.112 -8.448 -57.928 1 90.35 ? H031 HJJ 602 D 1 
HETATM 36 H H042 HJJ . . . N 3 14.422 -11.337 -58.036 1 81.47 ? H042 HJJ 602 D 1 
HETATM 37 H H041 HJJ . . . N 3 15.236 -10.584 -57 1 81.47 ? H041 HJJ 602 D 1 
HETATM 38 H H051 HJJ . . . N 3 15.631 -10.567 -59.759 1 84.85 ? H051 HJJ 602 D 1 
HETATM 39 H H052 HJJ . . . N 3 16.166 -9.383 -58.985 1 84.85 ? H052 HJJ 602 D 1 
HETATM 40 H H071 HJJ . . . N 3 19.138 -11.603 -59.385 1 93.57 ? H071 HJJ 602 D 1 
HETATM 41 H H082 HJJ . . . N 3 18.493 -10.942 -61.659 1 90.13 ? H082 HJJ 602 D 1 
HETATM 42 H H081 HJJ . . . N 3 17.373 -10.056 -61.092 1 90.13 ? H081 HJJ 602 D 1 
HETATM 43 H H121 HJJ . . . N 3 17.968 -6.885 -61.906 1 101.05 ? H121 HJJ 602 D 1 
HETATM 44 H H181 HJJ . . . N 3 21.671 -8.451 -65.517 1 101.38 ? H181 HJJ 602 D 1 
HETATM 45 H H253 HJJ . . . N 3 11.781 -7.497 -57.312 1 79.7 ? H253 HJJ 602 D 1 
HETATM 46 H H252 HJJ . . . N 3 11.348 -7.849 -58.726 1 79.7 ? H252 HJJ 602 D 1 
HETATM 47 H H251 HJJ . . . N 3 10.586 -8.408 -57.536 1 79.7 ? H251 HJJ 602 D 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           47 
#