data_6DWM
#
_model_server_result.job_id            RUvFK7oGgEVcYQSIkAC6wg 
_model_server_result.datetime_utc      '2024-10-16 21:00:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dwm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":603}' 
#
_entry.id    6DWM 
#
_exptl.entry_id    6DWM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DWM 
_cell.length_a            65.33 
_cell.length_b            194.758 
_cell.length_c            236.137 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DWM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,Q 1 1 
B,H,I,J,R 2 1 
C,K,L 3 1 
D,M,N,O,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 430 A CYS 457 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
metalc ? metalc2 B SG CYS 430 B CYS 457 1_555 H FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 232 n n 
C1 C2 GOL sing 233 n n 
C1 H11 GOL sing 234 n n 
C1 H12 GOL sing 235 n n 
O1 HO1 GOL sing 236 n n 
C2 O2 GOL sing 237 n n 
C2 C3 GOL sing 238 n n 
C2 H2 GOL sing 239 n n 
O2 HO2 GOL sing 240 n n 
C3 O3 GOL sing 241 n n 
C3 H31 GOL sing 242 n n 
C3 H32 GOL sing 243 n n 
O3 HO3 GOL sing 244 n n 
#
_atom_sites.entry_id                     6DWM 
_atom_sites.fract_transf_matrix[1][1]    0.015307 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005135 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004235 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 601 601 HEM HEM . 
F 3 HJJ A 1 602 1 HJJ LIG . 
G 4 CPS A 1 603 1 CPS CPS . 
H 2 HEM B 1 601 601 HEM HEM . 
I 3 HJJ B 1 602 2 HJJ LIG . 
J 5 GOL B 1 603 1 GOL GOL . 
K 2 HEM C 1 601 601 HEM HEM . 
L 3 HJJ C 1 602 3 HJJ LIG . 
M 2 HEM D 1 601 601 HEM HEM . 
N 3 HJJ D 1 602 4 HJJ LIG . 
O 4 CPS D 1 603 2 CPS CPS . 
P 5 GOL D 1 604 2 GOL GOL . 
Q 6 HOH A 1 701 11 HOH HOH . 
Q 6 HOH A 2 702 3 HOH HOH . 
Q 6 HOH A 3 703 10 HOH HOH . 
Q 6 HOH A 4 704 38 HOH HOH . 
Q 6 HOH A 5 705 13 HOH HOH . 
Q 6 HOH A 6 706 23 HOH HOH . 
Q 6 HOH A 7 707 35 HOH HOH . 
Q 6 HOH A 8 708 29 HOH HOH . 
Q 6 HOH A 9 709 28 HOH HOH . 
Q 6 HOH A 10 710 34 HOH HOH . 
Q 6 HOH A 11 711 37 HOH HOH . 
Q 6 HOH A 12 712 33 HOH HOH . 
Q 6 HOH A 13 713 4 HOH HOH . 
Q 6 HOH A 14 714 42 HOH HOH . 
Q 6 HOH A 15 715 40 HOH HOH . 
Q 6 HOH A 16 716 6 HOH HOH . 
Q 6 HOH A 17 717 36 HOH HOH . 
Q 6 HOH A 18 718 30 HOH HOH . 
Q 6 HOH A 19 719 27 HOH HOH . 
R 6 HOH B 1 701 2 HOH HOH . 
R 6 HOH B 2 702 5 HOH HOH . 
R 6 HOH B 3 703 7 HOH HOH . 
R 6 HOH B 4 704 22 HOH HOH . 
R 6 HOH B 5 705 14 HOH HOH . 
R 6 HOH B 6 706 31 HOH HOH . 
R 6 HOH B 7 707 26 HOH HOH . 
R 6 HOH B 8 708 12 HOH HOH . 
R 6 HOH B 9 709 32 HOH HOH . 
R 6 HOH B 10 710 39 HOH HOH . 
R 6 HOH B 11 711 18 HOH HOH . 
R 6 HOH B 12 712 21 HOH HOH . 
R 6 HOH B 13 713 17 HOH HOH . 
R 6 HOH B 14 714 25 HOH HOH . 
R 6 HOH B 15 715 46 HOH HOH . 
R 6 HOH B 16 716 15 HOH HOH . 
R 6 HOH B 17 717 8 HOH HOH . 
R 6 HOH B 18 718 16 HOH HOH . 
R 6 HOH B 19 719 43 HOH HOH . 
R 6 HOH B 20 720 24 HOH HOH . 
R 6 HOH B 21 721 19 HOH HOH . 
R 6 HOH B 22 722 1 HOH HOH . 
R 6 HOH B 23 723 9 HOH HOH . 
R 6 HOH B 24 724 44 HOH HOH . 
R 6 HOH B 25 725 20 HOH HOH . 
R 6 HOH B 26 726 41 HOH HOH . 
R 6 HOH B 27 727 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 5 -3.519 -71.79 -20.539 1 90.88 ? C1 GOL 603 B 1 
HETATM 2 O O1 GOL . . . J 5 -2.465 -72.476 -19.926 1 80.07 ? O1 GOL 603 B 1 
HETATM 3 C C2 GOL . . . J 5 -3.681 -72.361 -21.982 1 105.8 ? C2 GOL 603 B 1 
HETATM 4 O O2 GOL . . . J 5 -4.465 -73.511 -22.002 1 96.51 ? O2 GOL 603 B 1 
HETATM 5 C C3 GOL . . . J 5 -4.282 -71.174 -22.796 1 80.75 ? C3 GOL 603 B 1 
HETATM 6 O O3 GOL . . . J 5 -4.764 -71.688 -24.012 1 75.6 ? O3 GOL 603 B 1 
HETATM 7 H H11 GOL . . . J 5 -3.359 -70.835 -20.591 1 109.17 ? H11 GOL 603 B 1 
HETATM 8 H H12 GOL . . . J 5 -4.357 -71.893 -20.06 1 109.17 ? H12 GOL 603 B 1 
HETATM 9 H HO1 GOL . . . J 5 -2.086 -71.922 -19.405 1 96.19 ? HO1 GOL 603 B 1 
HETATM 10 H H2 GOL . . . J 5 -2.83 -72.635 -22.358 1 127.08 ? H2 GOL 603 B 1 
HETATM 11 H HO2 GOL . . . J 5 -5.003 -73.449 -22.657 1 115.92 ? HO2 GOL 603 B 1 
HETATM 12 H H31 GOL . . . J 5 -3.595 -70.499 -22.912 1 97.02 ? H31 GOL 603 B 1 
HETATM 13 H H32 GOL . . . J 5 -4.971 -70.749 -22.261 1 97.02 ? H32 GOL 603 B 1 
HETATM 14 H HO3 GOL . . . J 5 -5.003 -71.021 -24.482 1 90.83 ? HO3 GOL 603 B 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#