data_6DWN # _model_server_result.job_id om74qWAkU4Ya6lAF4VJNaQ _model_server_result.datetime_utc '2024-11-27 03:03:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dwn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6DWN # _exptl.entry_id 6DWN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DWN _cell.length_a 64.855 _cell.length_b 195.078 _cell.length_c 238.013 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DWN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,O 1 1 B,H,I,J,P 2 1 C,K,L 3 1 D,M,N 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 M N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 430 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 457 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.682 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 286 n n CHA C4D HEM doub 287 n n CHA HHA HEM sing 288 n n CHB C4A HEM sing 289 n n CHB C1B HEM doub 290 n n CHB HHB HEM sing 291 n n CHC C4B HEM sing 292 n n CHC C1C HEM doub 293 n n CHC HHC HEM sing 294 n n CHD C4C HEM doub 295 n n CHD C1D HEM sing 296 n n CHD HHD HEM sing 297 n n C1A C2A HEM doub 298 n y C1A NA HEM sing 299 n y C2A C3A HEM sing 300 n y C2A CAA HEM sing 301 n n C3A C4A HEM doub 302 n y C3A CMA HEM sing 303 n n C4A NA HEM sing 304 n y CMA HMA HEM sing 305 n n CMA HMAA HEM sing 306 n n CMA HMAB HEM sing 307 n n CAA CBA HEM sing 308 n n CAA HAA HEM sing 309 n n CAA HAAA HEM sing 310 n n CBA CGA HEM sing 311 n n CBA HBA HEM sing 312 n n CBA HBAA HEM sing 313 n n CGA O1A HEM doub 314 n n CGA O2A HEM sing 315 n n C1B C2B HEM sing 316 n n C1B NB HEM sing 317 n n C2B C3B HEM doub 318 n n C2B CMB HEM sing 319 n n C3B C4B HEM sing 320 n n C3B CAB HEM sing 321 n n C4B NB HEM doub 322 n n CMB HMB HEM sing 323 n n CMB HMBA HEM sing 324 n n CMB HMBB HEM sing 325 n n CAB CBB HEM doub 326 n n CAB HAB HEM sing 327 n n CBB HBB HEM sing 328 n n CBB HBBA HEM sing 329 n n C1C C2C HEM sing 330 n y C1C NC HEM sing 331 n y C2C C3C HEM doub 332 n y C2C CMC HEM sing 333 n n C3C C4C HEM sing 334 n y C3C CAC HEM sing 335 n n C4C NC HEM sing 336 n y CMC HMC HEM sing 337 n n CMC HMCA HEM sing 338 n n CMC HMCB HEM sing 339 n n CAC CBC HEM doub 340 n n CAC HAC HEM sing 341 n n CBC HBC HEM sing 342 n n CBC HBCA HEM sing 343 n n C1D C2D HEM sing 344 n n C1D ND HEM doub 345 n n C2D C3D HEM doub 346 n n C2D CMD HEM sing 347 n n C3D C4D HEM sing 348 n n C3D CAD HEM sing 349 n n C4D ND HEM sing 350 n n CMD HMD HEM sing 351 n n CMD HMDA HEM sing 352 n n CMD HMDB HEM sing 353 n n CAD CBD HEM sing 354 n n CAD HAD HEM sing 355 n n CAD HADA HEM sing 356 n n CBD CGD HEM sing 357 n n CBD HBD HEM sing 358 n n CBD HBDA HEM sing 359 n n CGD O1D HEM doub 360 n n CGD O2D HEM sing 361 n n O2A H2A HEM sing 362 n n O2D H2D HEM sing 363 n n FE NA HEM sing 364 n n FE NB HEM sing 365 n n FE NC HEM sing 366 n n FE ND HEM sing 367 n n # _atom_sites.entry_id 6DWN _atom_sites.fract_transf_matrix[1][1] 0.015419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 601 HEM HEM . F 3 AQ4 A 1 602 1 AQ4 AQ4 . G 4 CPS A 1 603 1 CPS CPS . H 2 HEM B 1 601 601 HEM HEM . I 3 AQ4 B 1 602 2 AQ4 AQ4 . J 4 CPS B 1 603 2 CPS CPS . K 2 HEM C 1 601 601 HEM HEM . L 3 AQ4 C 1 602 3 AQ4 AQ4 . M 2 HEM D 1 601 601 HEM HEM . N 3 AQ4 D 1 602 4 AQ4 AQ4 . O 5 HOH A 1 701 1 HOH HOH . O 5 HOH A 2 702 2 HOH HOH . O 5 HOH A 3 703 3 HOH HOH . P 5 HOH B 1 701 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 -19.253 -44.074 31.261 1 46.14 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . E 2 -21.216 -42.325 35.325 1 49.28 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . E 2 -16.804 -41.415 37.122 1 48.89 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . E 2 -14.834 -43.177 33.05 1 49.53 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . E 2 -20.174 -43.664 32.19 1 46.11 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . E 2 -21.612 -43.727 32.045 1 45.93 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . E 2 -22.155 -43.234 33.17 1 45.96 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . E 2 -21.078 -42.862 34.065 1 46.57 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . E 2 -23.659 -43.091 33.499 1 49.75 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . E 2 -22.351 -44.243 30.783 1 43.78 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . E 2 -23.241 -45.432 31.11 1 46.35 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . E 2 -23.732 -46.081 29.838 1 44.35 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . E 2 -24.427 -47.129 29.958 1 45.61 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . E 2 -23.414 -45.574 28.722 1 43.51 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . E 2 -20.198 -41.895 36.155 1 49.7 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . E 2 -20.364 -41.223 37.43 1 50.49 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . E 2 -19.141 -40.976 37.928 1 51.03 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . E 2 -18.172 -41.477 36.978 1 48.72 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . E 2 -21.742 -40.896 38.047 1 53.82 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . E 2 -18.716 -40.283 39.244 1 53.07 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . E 2 -19.583 -39.962 40.204 1 54.42 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . E 2 -15.879 -41.819 36.187 1 47.47 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . E 2 -14.439 -41.738 36.322 1 52.27 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . E 2 -13.889 -42.229 35.195 1 52.65 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . E 2 -14.97 -42.627 34.31 1 48.21 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . E 2 -13.742 -41.184 37.581 1 55.06 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . E 2 -12.399 -42.379 34.795 1 55.09 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . E 2 -11.378 -42.009 35.57 1 56.49 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . E 2 -15.856 -43.549 32.201 1 51.27 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . E 2 -15.709 -44.047 30.846 1 50.81 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . E 2 -16.925 -44.299 30.357 1 49.66 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . E 2 -17.891 -43.964 31.38 1 48.41 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . E 2 -14.374 -44.254 30.096 1 52.66 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . E 2 -17.242 -44.835 28.939 1 51.23 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . E 2 -17.185 -46.36 28.88 1 50.87 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . E 2 -17.726 -46.847 27.553 1 49 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . E 2 -17.532 -48.047 27.228 1 48.13 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . E 2 -18.351 -46.049 26.804 1 46.9 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . E 2 -19.885 -43.135 33.431 1 46.21 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . E 2 -18.848 -42.035 35.915 1 49.89 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . E 2 -16.164 -42.365 34.953 1 48.94 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . E 2 -17.205 -43.511 32.489 1 52.61 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . E 2 -18.022 -42.784 34.235 1 162.91 ? FE HEM 601 A 1 HETATM 44 H HHB HEM . . . E 2 -22.13 -42.239 35.669 1 60.09 ? HHB HEM 601 A 1 HETATM 45 H HHC HEM . . . E 2 -16.459 -41.052 37.965 1 59.61 ? HHC HEM 601 A 1 HETATM 46 H HHD HEM . . . E 2 -13.919 -43.317 32.726 1 60.38 ? HHD HEM 601 A 1 HETATM 47 H HMA HEM . . . E 2 -24.107 -42.603 32.777 1 60.64 ? HMA HEM 601 A 1 HETATM 48 H HMAA HEM . . . E 2 -23.764 -42.599 34.34 1 60.64 ? HMAA HEM 601 A 1 HETATM 49 H HMAB HEM . . . E 2 -24.06 -43.981 33.589 1 60.64 ? HMAB HEM 601 A 1 HETATM 50 H HAA HEM . . . E 2 -21.695 -44.512 30.121 1 53.48 ? HAA HEM 601 A 1 HETATM 51 H HAAA HEM . . . E 2 -22.899 -43.528 30.424 1 53.48 ? HAAA HEM 601 A 1 HETATM 52 H HBA HEM . . . E 2 -24.003 -45.13 31.629 1 56.56 ? HBA HEM 601 A 1 HETATM 53 H HBAA HEM . . . E 2 -22.735 -46.08 31.625 1 56.56 ? HBAA HEM 601 A 1 HETATM 54 H HMB HEM . . . E 2 -22.422 -40.93 37.357 1 65.53 ? HMB HEM 601 A 1 HETATM 55 H HMBA HEM . . . E 2 -21.72 -40.007 38.435 1 65.53 ? HMBA HEM 601 A 1 HETATM 56 H HMBB HEM . . . E 2 -21.95 -41.544 38.738 1 65.53 ? HMBB HEM 601 A 1 HETATM 57 H HAB HEM . . . E 2 -17.788 -40.076 39.376 1 64.63 ? HAB HEM 601 A 1 HETATM 58 H HBB HEM . . . E 2 -19.272 -39.528 41.013 1 66.25 ? HBB HEM 601 A 1 HETATM 59 H HBBA HEM . . . E 2 -20.526 -40.162 40.092 1 66.25 ? HBBA HEM 601 A 1 HETATM 60 H HMC HEM . . . E 2 -14.393 -40.727 38.137 1 67.02 ? HMC HEM 601 A 1 HETATM 61 H HMCA HEM . . . E 2 -13.047 -40.56 37.319 1 67.02 ? HMCA HEM 601 A 1 HETATM 62 H HMCB HEM . . . E 2 -13.347 -41.916 38.081 1 67.02 ? HMCB HEM 601 A 1 HETATM 63 H HAC HEM . . . E 2 -12.199 -42.762 33.937 1 67.05 ? HAC HEM 601 A 1 HETATM 64 H HBC HEM . . . E 2 -10.466 -42.129 35.262 1 68.74 ? HBC HEM 601 A 1 HETATM 65 H HBCA HEM . . . E 2 -11.547 -41.619 36.442 1 68.74 ? HBCA HEM 601 A 1 HETATM 66 H HMD HEM . . . E 2 -14.551 -44.644 29.215 1 64.14 ? HMD HEM 601 A 1 HETATM 67 H HMDA HEM . . . E 2 -13.799 -44.857 30.611 1 64.14 ? HMDA HEM 601 A 1 HETATM 68 H HMDB HEM . . . E 2 -13.925 -43.39 29.985 1 64.14 ? HMDB HEM 601 A 1 HETATM 69 H HAD HEM . . . E 2 -16.594 -44.473 28.315 1 62.42 ? HAD HEM 601 A 1 HETATM 70 H HADA HEM . . . E 2 -18.132 -44.545 28.686 1 62.42 ? HADA HEM 601 A 1 HETATM 71 H HBD HEM . . . E 2 -17.72 -46.73 29.6 1 61.99 ? HBD HEM 601 A 1 HETATM 72 H HBDA HEM . . . E 2 -16.265 -46.651 28.977 1 61.99 ? HBDA HEM 601 A 1 HETATM 73 H HHA HEM . . . E 2 -19.598 -44.481 30.44 1 56.31 ? HHA HEM 601 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 73 #