data_6DWN
#
_model_server_result.job_id            HK1rt8Vt2utuCCWYfWa-4w 
_model_server_result.datetime_utc      '2024-10-16 18:50:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dwn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":601}' 
#
_entry.id    6DWN 
#
_exptl.entry_id    6DWN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DWN 
_cell.length_a            64.855 
_cell.length_b            195.078 
_cell.length_c            238.013 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DWN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,O 1 1 
B,H,I,J,P 2 1 
C,K,L 3 1 
D,M,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 M N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             430 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              457 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            FE 
_struct_conn.ptnr2_label_comp_id            HEM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             HEM 
_struct_conn.ptnr2_auth_seq_id              601 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.682 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 286 n n 
CHA C4D HEM doub 287 n n 
CHA HHA HEM sing 288 n n 
CHB C4A HEM sing 289 n n 
CHB C1B HEM doub 290 n n 
CHB HHB HEM sing 291 n n 
CHC C4B HEM sing 292 n n 
CHC C1C HEM doub 293 n n 
CHC HHC HEM sing 294 n n 
CHD C4C HEM doub 295 n n 
CHD C1D HEM sing 296 n n 
CHD HHD HEM sing 297 n n 
C1A C2A HEM doub 298 n y 
C1A NA HEM sing 299 n y 
C2A C3A HEM sing 300 n y 
C2A CAA HEM sing 301 n n 
C3A C4A HEM doub 302 n y 
C3A CMA HEM sing 303 n n 
C4A NA HEM sing 304 n y 
CMA HMA HEM sing 305 n n 
CMA HMAA HEM sing 306 n n 
CMA HMAB HEM sing 307 n n 
CAA CBA HEM sing 308 n n 
CAA HAA HEM sing 309 n n 
CAA HAAA HEM sing 310 n n 
CBA CGA HEM sing 311 n n 
CBA HBA HEM sing 312 n n 
CBA HBAA HEM sing 313 n n 
CGA O1A HEM doub 314 n n 
CGA O2A HEM sing 315 n n 
C1B C2B HEM sing 316 n n 
C1B NB HEM sing 317 n n 
C2B C3B HEM doub 318 n n 
C2B CMB HEM sing 319 n n 
C3B C4B HEM sing 320 n n 
C3B CAB HEM sing 321 n n 
C4B NB HEM doub 322 n n 
CMB HMB HEM sing 323 n n 
CMB HMBA HEM sing 324 n n 
CMB HMBB HEM sing 325 n n 
CAB CBB HEM doub 326 n n 
CAB HAB HEM sing 327 n n 
CBB HBB HEM sing 328 n n 
CBB HBBA HEM sing 329 n n 
C1C C2C HEM sing 330 n y 
C1C NC HEM sing 331 n y 
C2C C3C HEM doub 332 n y 
C2C CMC HEM sing 333 n n 
C3C C4C HEM sing 334 n y 
C3C CAC HEM sing 335 n n 
C4C NC HEM sing 336 n y 
CMC HMC HEM sing 337 n n 
CMC HMCA HEM sing 338 n n 
CMC HMCB HEM sing 339 n n 
CAC CBC HEM doub 340 n n 
CAC HAC HEM sing 341 n n 
CBC HBC HEM sing 342 n n 
CBC HBCA HEM sing 343 n n 
C1D C2D HEM sing 344 n n 
C1D ND HEM doub 345 n n 
C2D C3D HEM doub 346 n n 
C2D CMD HEM sing 347 n n 
C3D C4D HEM sing 348 n n 
C3D CAD HEM sing 349 n n 
C4D ND HEM sing 350 n n 
CMD HMD HEM sing 351 n n 
CMD HMDA HEM sing 352 n n 
CMD HMDB HEM sing 353 n n 
CAD CBD HEM sing 354 n n 
CAD HAD HEM sing 355 n n 
CAD HADA HEM sing 356 n n 
CBD CGD HEM sing 357 n n 
CBD HBD HEM sing 358 n n 
CBD HBDA HEM sing 359 n n 
CGD O1D HEM doub 360 n n 
CGD O2D HEM sing 361 n n 
O2A H2A HEM sing 362 n n 
O2D H2D HEM sing 363 n n 
FE NA HEM sing 364 n n 
FE NB HEM sing 365 n n 
FE NC HEM sing 366 n n 
FE ND HEM sing 367 n n 
#
_atom_sites.entry_id                     6DWN 
_atom_sites.fract_transf_matrix[1][1]    0.015419 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004201 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 601 601 HEM HEM . 
F 3 AQ4 A 1 602 1 AQ4 AQ4 . 
G 4 CPS A 1 603 1 CPS CPS . 
H 2 HEM B 1 601 601 HEM HEM . 
I 3 AQ4 B 1 602 2 AQ4 AQ4 . 
J 4 CPS B 1 603 2 CPS CPS . 
K 2 HEM C 1 601 601 HEM HEM . 
L 3 AQ4 C 1 602 3 AQ4 AQ4 . 
M 2 HEM D 1 601 601 HEM HEM . 
N 3 AQ4 D 1 602 4 AQ4 AQ4 . 
O 5 HOH A 1 701 1 HOH HOH . 
O 5 HOH A 2 702 2 HOH HOH . 
O 5 HOH A 3 703 3 HOH HOH . 
P 5 HOH B 1 701 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 2 -51.843 -133.869 -9.903 1 98.36 ? CHA HEM 601 C 1 
HETATM 2 C CHB HEM . . . K 2 -55.367 -132.535 -6.851 1 93.32 ? CHB HEM 601 C 1 
HETATM 3 C CHC HEM . . . K 2 -51.991 -130.886 -3.78 1 96.13 ? CHC HEM 601 C 1 
HETATM 4 C CHD HEM . . . K 2 -48.466 -132.398 -6.748 1 100.73 ? CHD HEM 601 C 1 
HETATM 5 C C1A HEM . . . K 2 -53.084 -133.605 -9.37 1 96.73 ? C1A HEM 601 C 1 
HETATM 6 C C2A HEM . . . K 2 -54.347 -133.81 -10.042 1 95.72 ? C2A HEM 601 C 1 
HETATM 7 C C3A HEM . . . K 2 -55.328 -133.441 -9.212 1 93.25 ? C3A HEM 601 C 1 
HETATM 8 C C4A HEM . . . K 2 -54.714 -132.996 -7.972 1 93.69 ? C4A HEM 601 C 1 
HETATM 9 C CMA HEM . . . K 2 -56.846 -133.483 -9.506 1 92.68 ? CMA HEM 601 C 1 
HETATM 10 C CAA HEM . . . K 2 -54.487 -134.348 -11.482 1 95.11 ? CAA HEM 601 C 1 
HETATM 11 C CBA HEM . . . K 2 -55.303 -135.634 -11.488 1 94 ? CBA HEM 601 C 1 
HETATM 12 C CGA HEM . . . K 2 -55.174 -136.282 -12.842 1 96.58 ? CGA HEM 601 C 1 
HETATM 13 O O1A HEM . . . K 2 -55.768 -137.372 -13.046 1 93.77 ? O1A HEM 601 C 1 
HETATM 14 O O2A HEM . . . K 2 -54.476 -135.706 -13.717 1 98.5 ? O2A HEM 601 C 1 
HETATM 15 C C1B HEM . . . K 2 -54.765 -131.929 -5.768 1 93.84 ? C1B HEM 601 C 1 
HETATM 16 C C2B HEM . . . K 2 -55.44 -131.264 -4.666 1 91.13 ? C2B HEM 601 C 1 
HETATM 17 C C3B HEM . . . K 2 -54.498 -130.807 -3.821 1 92.42 ? C3B HEM 601 C 1 
HETATM 18 C C4B HEM . . . K 2 -53.206 -131.174 -4.363 1 93.07 ? C4B HEM 601 C 1 
HETATM 19 C CMB HEM . . . K 2 -56.976 -131.133 -4.542 1 89.71 ? CMB HEM 601 C 1 
HETATM 20 C CAB HEM . . . K 2 -54.648 -130.035 -2.485 1 89.08 ? CAB HEM 601 C 1 
HETATM 21 C CBB HEM . . . K 2 -55.823 -129.863 -1.866 1 84.81 ? CBB HEM 601 C 1 
HETATM 22 C C1C HEM . . . K 2 -50.746 -131.182 -4.294 1 96.55 ? C1C HEM 601 C 1 
HETATM 23 C C2C HEM . . . K 2 -49.48 -130.951 -3.628 1 98.47 ? C2C HEM 601 C 1 
HETATM 24 C C3C HEM . . . K 2 -48.498 -131.365 -4.445 1 100.17 ? C3C HEM 601 C 1 
HETATM 25 C C4C HEM . . . K 2 -49.12 -131.874 -5.655 1 98.56 ? C4C HEM 601 C 1 
HETATM 26 C CMC HEM . . . K 2 -49.356 -130.332 -2.22 1 98.09 ? CMC HEM 601 C 1 
HETATM 27 C CAC HEM . . . K 2 -46.962 -131.35 -4.23 1 98.23 ? CAC HEM 601 C 1 
HETATM 28 C CBC HEM . . . K 2 -46.366 -130.89 -3.123 1 98.3 ? CBC HEM 601 C 1 
HETATM 29 C C1D HEM . . . K 2 -49.071 -132.865 -7.896 1 100.85 ? C1D HEM 601 C 1 
HETATM 30 C C2D HEM . . . K 2 -48.411 -133.22 -9.139 1 100.06 ? C2D HEM 601 C 1 
HETATM 31 C C3D HEM . . . K 2 -49.347 -133.627 -10.001 1 99.61 ? C3D HEM 601 C 1 
HETATM 32 C C4D HEM . . . K 2 -50.632 -133.539 -9.343 1 98.2 ? C4D HEM 601 C 1 
HETATM 33 C CMD HEM . . . K 2 -46.893 -133.146 -9.412 1 104.15 ? CMD HEM 601 C 1 
HETATM 34 C CAD HEM . . . K 2 -49.128 -134.101 -11.454 1 100.85 ? CAD HEM 601 C 1 
HETATM 35 C CBD HEM . . . K 2 -48.787 -135.587 -11.471 1 98.92 ? CBD HEM 601 C 1 
HETATM 36 C CGD HEM . . . K 2 -48.839 -136.114 -12.882 1 101.7 ? CGD HEM 601 C 1 
HETATM 37 O O1D HEM . . . K 2 -48.332 -137.241 -13.118 1 102.78 ? O1D HEM 601 C 1 
HETATM 38 O O2D HEM . . . K 2 -49.377 -135.41 -13.775 1 104.01 ? O2D HEM 601 C 1 
HETATM 39 N NA HEM . . . K 2 -53.344 -133.112 -8.107 1 93.04 ? NA HEM 601 C 1 
HETATM 40 N NB HEM . . . K 2 -53.403 -131.853 -5.55 1 92.98 ? NB HEM 601 C 1 
HETATM 41 N NC HEM . . . K 2 -50.49 -131.747 -5.529 1 95.61 ? NC HEM 601 C 1 
HETATM 42 N ND HEM . . . K 2 -50.428 -133.074 -8.058 1 97.47 ? ND HEM 601 C 1 
HETATM 43 FE FE HEM . . . K 2 -51.92 -132.511 -6.796 1 86.59 ? FE HEM 601 C 1 
HETATM 44 H HHB HEM . . . K 2 -56.34 -132.646 -6.82 1 112.93 ? HHB HEM 601 C 1 
HETATM 45 H HHC HEM . . . K 2 -52.014 -130.427 -2.914 1 116.3 ? HHC HEM 601 C 1 
HETATM 46 H HHD HEM . . . K 2 -47.488 -132.443 -6.707 1 121.82 ? HHD HEM 601 C 1 
HETATM 47 H HMA HEM . . . K 2 -57.03 -133.014 -10.346 1 112.16 ? HMA HEM 601 C 1 
HETATM 48 H HMAA HEM . . . K 2 -57.333 -133.047 -8.776 1 112.16 ? HMAA HEM 601 C 1 
HETATM 49 H HMAB HEM . . . K 2 -57.139 -134.416 -9.582 1 112.16 ? HMAB HEM 601 C 1 
HETATM 50 H HAA HEM . . . K 2 -53.605 -134.527 -11.843 1 115.08 ? HAA HEM 601 C 1 
HETATM 51 H HAAA HEM . . . K 2 -54.933 -133.683 -12.03 1 115.08 ? HAAA HEM 601 C 1 
HETATM 52 H HBA HEM . . . K 2 -56.235 -135.43 -11.313 1 113.75 ? HBA HEM 601 C 1 
HETATM 53 H HBAA HEM . . . K 2 -54.97 -136.236 -10.805 1 113.75 ? HBAA HEM 601 C 1 
HETATM 54 H HMB HEM . . . K 2 -57.386 -131.299 -5.406 1 108.59 ? HMB HEM 601 C 1 
HETATM 55 H HMBA HEM . . . K 2 -57.201 -130.238 -4.245 1 108.59 ? HMBA HEM 601 C 1 
HETATM 56 H HMBB HEM . . . K 2 -57.305 -131.78 -3.899 1 108.59 ? HMBB HEM 601 C 1 
HETATM 57 H HAB HEM . . . K 2 -53.861 -129.662 -2.082 1 107.85 ? HAB HEM 601 C 1 
HETATM 58 H HBB HEM . . . K 2 -55.863 -129.371 -1.031 1 102.72 ? HBB HEM 601 C 1 
HETATM 59 H HBBA HEM . . . K 2 -56.633 -130.23 -2.252 1 102.72 ? HBBA HEM 601 C 1 
HETATM 60 H HMC HEM . . . K 2 -50.235 -130.074 -1.901 1 118.66 ? HMC HEM 601 C 1 
HETATM 61 H HMCA HEM . . . K 2 -48.785 -129.549 -2.26 1 118.66 ? HMCA HEM 601 C 1 
HETATM 62 H HMCB HEM . . . K 2 -48.971 -130.983 -1.613 1 118.66 ? HMCB HEM 601 C 1 
HETATM 63 H HAC HEM . . . K 2 -46.405 -131.691 -4.933 1 118.82 ? HAC HEM 601 C 1 
HETATM 64 H HBC HEM . . . K 2 -45.399 -130.909 -3.05 1 118.91 ? HBC HEM 601 C 1 
HETATM 65 H HBCA HEM . . . K 2 -46.901 -130.539 -2.394 1 118.91 ? HBCA HEM 601 C 1 
HETATM 66 H HMD HEM . . . K 2 -46.703 -133.499 -10.307 1 125.92 ? HMD HEM 601 C 1 
HETATM 67 H HMDA HEM . . . K 2 -46.414 -133.677 -8.743 1 125.92 ? HMDA HEM 601 C 1 
HETATM 68 H HMDB HEM . . . K 2 -46.597 -132.213 -9.361 1 125.92 ? HMDB HEM 601 C 1 
HETATM 69 H HAD HEM . . . K 2 -48.397 -133.6 -11.848 1 121.96 ? HAD HEM 601 C 1 
HETATM 70 H HADA HEM . . . K 2 -49.937 -133.951 -11.967 1 121.96 ? HADA HEM 601 C 1 
HETATM 71 H HBD HEM . . . K 2 -49.428 -136.069 -10.925 1 119.65 ? HBD HEM 601 C 1 
HETATM 72 H HBDA HEM . . . K 2 -47.895 -135.716 -11.113 1 119.65 ? HBDA HEM 601 C 1 
HETATM 73 H HHA HEM . . . K 2 -51.821 -134.337 -10.764 1 118.98 ? HHA HEM 601 C 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           73 
#