data_6DWN
#
_model_server_result.job_id            9lGV71XfmdZXYFgk24dVbg 
_model_server_result.datetime_utc      '2024-10-16 18:55:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dwn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":601}' 
#
_entry.id    6DWN 
#
_exptl.entry_id    6DWN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DWN 
_cell.length_a            64.855 
_cell.length_b            195.078 
_cell.length_c            238.013 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DWN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,O 1 1 
B,H,I,J,P 2 1 
C,K,L 3 1 
D,M,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 M N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             430 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              457 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            FE 
_struct_conn.ptnr2_label_comp_id            HEM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             HEM 
_struct_conn.ptnr2_auth_seq_id              601 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.682 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 286 n n 
CHA C4D HEM doub 287 n n 
CHA HHA HEM sing 288 n n 
CHB C4A HEM sing 289 n n 
CHB C1B HEM doub 290 n n 
CHB HHB HEM sing 291 n n 
CHC C4B HEM sing 292 n n 
CHC C1C HEM doub 293 n n 
CHC HHC HEM sing 294 n n 
CHD C4C HEM doub 295 n n 
CHD C1D HEM sing 296 n n 
CHD HHD HEM sing 297 n n 
C1A C2A HEM doub 298 n y 
C1A NA HEM sing 299 n y 
C2A C3A HEM sing 300 n y 
C2A CAA HEM sing 301 n n 
C3A C4A HEM doub 302 n y 
C3A CMA HEM sing 303 n n 
C4A NA HEM sing 304 n y 
CMA HMA HEM sing 305 n n 
CMA HMAA HEM sing 306 n n 
CMA HMAB HEM sing 307 n n 
CAA CBA HEM sing 308 n n 
CAA HAA HEM sing 309 n n 
CAA HAAA HEM sing 310 n n 
CBA CGA HEM sing 311 n n 
CBA HBA HEM sing 312 n n 
CBA HBAA HEM sing 313 n n 
CGA O1A HEM doub 314 n n 
CGA O2A HEM sing 315 n n 
C1B C2B HEM sing 316 n n 
C1B NB HEM sing 317 n n 
C2B C3B HEM doub 318 n n 
C2B CMB HEM sing 319 n n 
C3B C4B HEM sing 320 n n 
C3B CAB HEM sing 321 n n 
C4B NB HEM doub 322 n n 
CMB HMB HEM sing 323 n n 
CMB HMBA HEM sing 324 n n 
CMB HMBB HEM sing 325 n n 
CAB CBB HEM doub 326 n n 
CAB HAB HEM sing 327 n n 
CBB HBB HEM sing 328 n n 
CBB HBBA HEM sing 329 n n 
C1C C2C HEM sing 330 n y 
C1C NC HEM sing 331 n y 
C2C C3C HEM doub 332 n y 
C2C CMC HEM sing 333 n n 
C3C C4C HEM sing 334 n y 
C3C CAC HEM sing 335 n n 
C4C NC HEM sing 336 n y 
CMC HMC HEM sing 337 n n 
CMC HMCA HEM sing 338 n n 
CMC HMCB HEM sing 339 n n 
CAC CBC HEM doub 340 n n 
CAC HAC HEM sing 341 n n 
CBC HBC HEM sing 342 n n 
CBC HBCA HEM sing 343 n n 
C1D C2D HEM sing 344 n n 
C1D ND HEM doub 345 n n 
C2D C3D HEM doub 346 n n 
C2D CMD HEM sing 347 n n 
C3D C4D HEM sing 348 n n 
C3D CAD HEM sing 349 n n 
C4D ND HEM sing 350 n n 
CMD HMD HEM sing 351 n n 
CMD HMDA HEM sing 352 n n 
CMD HMDB HEM sing 353 n n 
CAD CBD HEM sing 354 n n 
CAD HAD HEM sing 355 n n 
CAD HADA HEM sing 356 n n 
CBD CGD HEM sing 357 n n 
CBD HBD HEM sing 358 n n 
CBD HBDA HEM sing 359 n n 
CGD O1D HEM doub 360 n n 
CGD O2D HEM sing 361 n n 
O2A H2A HEM sing 362 n n 
O2D H2D HEM sing 363 n n 
FE NA HEM sing 364 n n 
FE NB HEM sing 365 n n 
FE NC HEM sing 366 n n 
FE ND HEM sing 367 n n 
#
_atom_sites.entry_id                     6DWN 
_atom_sites.fract_transf_matrix[1][1]    0.015419 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004201 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 601 601 HEM HEM . 
F 3 AQ4 A 1 602 1 AQ4 AQ4 . 
G 4 CPS A 1 603 1 CPS CPS . 
H 2 HEM B 1 601 601 HEM HEM . 
I 3 AQ4 B 1 602 2 AQ4 AQ4 . 
J 4 CPS B 1 603 2 CPS CPS . 
K 2 HEM C 1 601 601 HEM HEM . 
L 3 AQ4 C 1 602 3 AQ4 AQ4 . 
M 2 HEM D 1 601 601 HEM HEM . 
N 3 AQ4 D 1 602 4 AQ4 AQ4 . 
O 5 HOH A 1 701 1 HOH HOH . 
O 5 HOH A 2 702 2 HOH HOH . 
O 5 HOH A 3 703 3 HOH HOH . 
P 5 HOH B 1 701 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . M 2 -18.82 -85.013 55.139 1 88.71 ? CHA HEM 601 D 1 
HETATM 2 C CHB HEM . . . M 2 -21.636 -88.918 54.781 1 84.26 ? CHB HEM 601 D 1 
HETATM 3 C CHC HEM . . . M 2 -17.708 -91.599 53.838 1 83.29 ? CHC HEM 601 D 1 
HETATM 4 C CHD HEM . . . M 2 -14.91 -87.666 54.109 1 89.04 ? CHD HEM 601 D 1 
HETATM 5 C C1A HEM . . . M 2 -19.907 -85.844 55.174 1 88.37 ? C1A HEM 601 D 1 
HETATM 6 C C2A HEM . . . M 2 -21.246 -85.445 55.55 1 86.72 ? C2A HEM 601 D 1 
HETATM 7 C C3A HEM . . . M 2 -22.031 -86.522 55.456 1 84.64 ? C3A HEM 601 D 1 
HETATM 8 C C4A HEM . . . M 2 -21.21 -87.632 55.005 1 85.16 ? C4A HEM 601 D 1 
HETATM 9 C CMA HEM . . . M 2 -23.542 -86.59 55.762 1 82.48 ? CMA HEM 601 D 1 
HETATM 10 C CAA HEM . . . M 2 -21.633 -84.019 56.004 1 86.75 ? CAA HEM 601 D 1 
HETATM 11 C CBA HEM . . . M 2 -22.684 -83.419 55.083 1 83.3 ? CBA HEM 601 D 1 
HETATM 12 C CGA HEM . . . M 2 -22.821 -81.945 55.373 1 82.89 ? CGA HEM 601 D 1 
HETATM 13 O O1A HEM . . . M 2 -23.628 -81.28 54.67 1 83.83 ? O1A HEM 601 D 1 
HETATM 14 O O2A HEM . . . M 2 -22.124 -81.434 56.293 1 86.88 ? O2A HEM 601 D 1 
HETATM 15 C C1B HEM . . . M 2 -20.812 -89.986 54.497 1 84.25 ? C1B HEM 601 D 1 
HETATM 16 C C2B HEM . . . M 2 -21.242 -91.357 54.301 1 80.81 ? C2B HEM 601 D 1 
HETATM 17 C C3B HEM . . . M 2 -20.153 -92.103 54.048 1 81.24 ? C3B HEM 601 D 1 
HETATM 18 C C4B HEM . . . M 2 -19.007 -91.216 54.066 1 83.37 ? C4B HEM 601 D 1 
HETATM 19 C CMB HEM . . . M 2 -22.717 -91.81 54.399 1 76.04 ? CMB HEM 601 D 1 
HETATM 20 C CAB HEM . . . M 2 -20.04 -93.622 53.753 1 77.66 ? CAB HEM 601 D 1 
HETATM 21 C CBB HEM . . . M 2 -21.106 -94.398 53.521 1 75.75 ? CBB HEM 601 D 1 
HETATM 22 C C1C HEM . . . M 2 -16.617 -90.763 53.805 1 84.39 ? C1C HEM 601 D 1 
HETATM 23 C C2C HEM . . . M 2 -15.259 -91.164 53.488 1 84.19 ? C2C HEM 601 D 1 
HETATM 24 C C3C HEM . . . M 2 -14.48 -90.073 53.565 1 86.31 ? C3C HEM 601 D 1 
HETATM 25 C C4C HEM . . . M 2 -15.33 -88.96 53.932 1 87.45 ? C4C HEM 601 D 1 
HETATM 26 C CMC HEM . . . M 2 -14.868 -92.614 53.124 1 84.03 ? CMC HEM 601 D 1 
HETATM 27 C CAC HEM . . . M 2 -12.957 -89.903 53.324 1 85.95 ? CAC HEM 601 D 1 
HETATM 28 C CBC HEM . . . M 2 -12.139 -90.901 52.971 1 85 ? CBC HEM 601 D 1 
HETATM 29 C C1D HEM . . . M 2 -15.724 -86.618 54.462 1 87.28 ? C1D HEM 601 D 1 
HETATM 30 C C2D HEM . . . M 2 -15.286 -85.281 54.818 1 87.68 ? C2D HEM 601 D 1 
HETATM 31 C C3D HEM . . . M 2 -16.369 -84.558 55.11 1 87.85 ? C3D HEM 601 D 1 
HETATM 32 C C4D HEM . . . M 2 -17.525 -85.408 54.934 1 87.59 ? C4D HEM 601 D 1 
HETATM 33 C CMD HEM . . . M 2 -13.822 -84.795 54.867 1 81.31 ? CMD HEM 601 D 1 
HETATM 34 C CAD HEM . . . M 2 -16.432 -83.073 55.54 1 86.46 ? CAD HEM 601 D 1 
HETATM 35 C CBD HEM . . . M 2 -16.488 -82.169 54.311 1 86.36 ? CBD HEM 601 D 1 
HETATM 36 C CGD HEM . . . M 2 -16.831 -80.757 54.718 1 90.55 ? CGD HEM 601 D 1 
HETATM 37 O O1D HEM . . . M 2 -16.694 -79.834 53.874 1 92.6 ? O1D HEM 601 D 1 
HETATM 38 O O2D HEM . . . M 2 -17.253 -80.55 55.884 1 90.3 ? O2D HEM 601 D 1 
HETATM 39 N NA HEM . . . M 2 -19.913 -87.183 54.839 1 87.17 ? NA HEM 601 D 1 
HETATM 40 N NB HEM . . . M 2 -19.437 -89.932 54.345 1 85 ? NB HEM 601 D 1 
HETATM 41 N NC HEM . . . M 2 -16.628 -89.409 54.073 1 86.19 ? NC HEM 601 D 1 
HETATM 42 N ND HEM . . . M 2 -17.105 -86.663 54.539 1 87.36 ? ND HEM 601 D 1 
HETATM 43 FE FE HEM . . . M 2 -18.277 -88.27 54.38 1 116.41 ? FE HEM 601 D 1 
HETATM 44 H HHB HEM . . . M 2 -22.6 -89.091 54.827 1 102.06 ? HHB HEM 601 D 1 
HETATM 45 H HHC HEM . . . M 2 -17.544 -92.554 53.686 1 100.9 ? HHC HEM 601 D 1 
HETATM 46 H HHD HEM . . . M 2 -13.959 -87.475 53.972 1 107.8 ? HHD HEM 601 D 1 
HETATM 47 H HMA HEM . . . M 2 -23.711 -86.228 56.657 1 99.92 ? HMA HEM 601 D 1 
HETATM 48 H HMAA HEM . . . M 2 -23.842 -87.522 55.725 1 99.92 ? HMAA HEM 601 D 1 
HETATM 49 H HMAB HEM . . . M 2 -24.034 -86.062 55.099 1 99.92 ? HMAB HEM 601 D 1 
HETATM 50 H HAA HEM . . . M 2 -20.843 -83.457 55.992 1 105.05 ? HAA HEM 601 D 1 
HETATM 51 H HAAA HEM . . . M 2 -21.988 -84.059 56.906 1 105.05 ? HAAA HEM 601 D 1 
HETATM 52 H HBA HEM . . . M 2 -23.536 -83.859 55.233 1 100.91 ? HBA HEM 601 D 1 
HETATM 53 H HBAA HEM . . . M 2 -22.415 -83.544 54.159 1 100.91 ? HBAA HEM 601 D 1 
HETATM 54 H HMB HEM . . . M 2 -23.228 -91.146 54.888 1 92.19 ? HMB HEM 601 D 1 
HETATM 55 H HMBA HEM . . . M 2 -22.764 -92.66 54.864 1 92.19 ? HMBA HEM 601 D 1 
HETATM 56 H HMBB HEM . . . M 2 -23.085 -91.908 53.507 1 92.19 ? HMBB HEM 601 D 1 
HETATM 57 H HAB HEM . . . M 2 -19.168 -94.022 53.737 1 94.13 ? HAB HEM 601 D 1 
HETATM 58 H HBB HEM . . . M 2 -20.987 -95.344 53.341 1 91.84 ? HBB HEM 601 D 1 
HETATM 59 H HBBA HEM . . . M 2 -21.997 -94.015 53.533 1 91.84 ? HBBA HEM 601 D 1 
HETATM 60 H HMC HEM . . . M 2 -15.534 -93.227 53.472 1 101.78 ? HMC HEM 601 D 1 
HETATM 61 H HMCA HEM . . . M 2 -14.003 -92.823 53.511 1 101.78 ? HMCA HEM 601 D 1 
HETATM 62 H HMCB HEM . . . M 2 -14.819 -92.704 52.159 1 101.78 ? HMCB HEM 601 D 1 
HETATM 63 H HAC HEM . . . M 2 -12.578 -89.027 53.434 1 104.09 ? HAC HEM 601 D 1 
HETATM 64 H HBC HEM . . . M 2 -11.194 -90.729 52.835 1 102.94 ? HBC HEM 601 D 1 
HETATM 65 H HBCA HEM . . . M 2 -12.491 -91.797 52.851 1 102.94 ? HBCA HEM 601 D 1 
HETATM 66 H HMD HEM . . . M 2 -13.802 -83.84 55.086 1 98.52 ? HMD HEM 601 D 1 
HETATM 67 H HMDA HEM . . . M 2 -13.4 -84.939 53.995 1 98.52 ? HMDA HEM 601 D 1 
HETATM 68 H HMDB HEM . . . M 2 -13.333 -85.297 55.553 1 98.52 ? HMDB HEM 601 D 1 
HETATM 69 H HAD HEM . . . M 2 -15.643 -82.857 56.061 1 104.69 ? HAD HEM 601 D 1 
HETATM 70 H HADA HEM . . . M 2 -17.226 -82.929 56.079 1 104.69 ? HADA HEM 601 D 1 
HETATM 71 H HBD HEM . . . M 2 -17.165 -82.5 53.7 1 104.58 ? HBD HEM 601 D 1 
HETATM 72 H HBDA HEM . . . M 2 -15.624 -82.174 53.87 1 104.58 ? HBDA HEM 601 D 1 
HETATM 73 H HHA HEM . . . M 2 -18.981 -84.056 55.273 1 107.4 ? HHA HEM 601 D 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           73 
#