data_6DXG # _model_server_result.job_id NQTu4LQx8TnQwlf1q0dq4w _model_server_result.datetime_utc '2024-11-05 01:00:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dxg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6DXG # _exptl.entry_id 6DXG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.475 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(1-ethyl-3-methyl-1H-pyrazole-5-carbonyl)amino]-1-[(2R)-2-hydroxy-2-phenylethyl]-1H-benzimidazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DXG _cell.length_a 81.607 _cell.length_b 92.221 _cell.length_c 72.735 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DXG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -36.3675 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 53 A ASP 205 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc2 A OE1 GLU 164 A GLU 316 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc3 A OE2 GLU 164 A GLU 316 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc4 A O VAL 189 A VAL 341 1_555 B CA CA . A CA 401 6_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc5 B CA CA . A CA 401 1_555 D O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc6 B CA CA . A CA 401 1_555 D O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc7 B CA CA . A CA 401 1_555 D O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? # _chem_comp.formula 'C23 H24 N6 O3' _chem_comp.formula_weight 432.475 _chem_comp.id HGJ _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(1-ethyl-3-methyl-1H-pyrazole-5-carbonyl)amino]-1-[(2R)-2-hydroxy-2-phenylethyl]-1H-benzimidazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 HGJ doub 129 n y C27 C26 HGJ sing 130 n y C28 C29 HGJ sing 131 n y C26 C25 HGJ doub 132 n y C29 C24 HGJ doub 133 n y C06 C05 HGJ sing 134 n n C25 C24 HGJ sing 135 n y C24 C22 HGJ sing 136 n n C05 C07 HGJ sing 137 n y C05 N04 HGJ doub 138 n y C07 C08 HGJ doub 139 n y C21 C22 HGJ sing 140 n n C21 N20 HGJ sing 141 n n N04 N03 HGJ sing 142 n y C01 C02 HGJ sing 143 n n C08 N03 HGJ sing 144 n y C08 C09 HGJ sing 145 n n C22 O23 HGJ sing 146 n n N03 C02 HGJ sing 147 n n N11 C09 HGJ sing 148 n n N11 C12 HGJ sing 149 n n N20 C12 HGJ sing 150 n y N20 C19 HGJ sing 151 n y C09 O10 HGJ doub 152 n n C12 N13 HGJ doub 153 n y C18 C19 HGJ doub 154 n y C18 C17 HGJ sing 155 n y C19 C14 HGJ sing 156 n y N13 C14 HGJ sing 157 n y C17 C16 HGJ doub 158 n y C14 C15 HGJ doub 159 n y C16 C15 HGJ sing 160 n y C16 C30 HGJ sing 161 n n O32 C30 HGJ doub 162 n n C30 N31 HGJ sing 163 n n C18 H45 HGJ sing 164 n n C17 H44 HGJ sing 165 n n C15 H43 HGJ sing 166 n n C01 H34 HGJ sing 167 n n C01 H35 HGJ sing 168 n n C01 H33 HGJ sing 169 n n C02 H36 HGJ sing 170 n n C02 H37 HGJ sing 171 n n C06 H39 HGJ sing 172 n n C06 H38 HGJ sing 173 n n C06 H40 HGJ sing 174 n n C07 H41 HGJ sing 175 n n C21 H46 HGJ sing 176 n n C21 H47 HGJ sing 177 n n C22 H48 HGJ sing 178 n n C25 H50 HGJ sing 179 n n C26 H51 HGJ sing 180 n n C27 H52 HGJ sing 181 n n C28 H53 HGJ sing 182 n n C29 H54 HGJ sing 183 n n N11 H42 HGJ sing 184 n n N31 H55 HGJ sing 185 n n N31 H56 HGJ sing 186 n n O23 H49 HGJ sing 187 n n # _atom_sites.entry_id 6DXG _atom_sites.fract_transf_matrix[1][1] 0.012254 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 1 CA CA . C 3 HGJ A 1 402 1 HGJ 376 . D 4 HOH A 1 501 62 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 17 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 19 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 20 HOH HOH . D 4 HOH A 8 508 49 HOH HOH . D 4 HOH A 9 509 7 HOH HOH . D 4 HOH A 10 510 5 HOH HOH . D 4 HOH A 11 511 13 HOH HOH . D 4 HOH A 12 512 11 HOH HOH . D 4 HOH A 13 513 52 HOH HOH . D 4 HOH A 14 514 65 HOH HOH . D 4 HOH A 15 515 9 HOH HOH . D 4 HOH A 16 516 8 HOH HOH . D 4 HOH A 17 517 32 HOH HOH . D 4 HOH A 18 518 38 HOH HOH . D 4 HOH A 19 519 3 HOH HOH . D 4 HOH A 20 520 15 HOH HOH . D 4 HOH A 21 521 27 HOH HOH . D 4 HOH A 22 522 40 HOH HOH . D 4 HOH A 23 523 14 HOH HOH . D 4 HOH A 24 524 12 HOH HOH . D 4 HOH A 25 525 63 HOH HOH . D 4 HOH A 26 526 50 HOH HOH . D 4 HOH A 27 527 21 HOH HOH . D 4 HOH A 28 528 41 HOH HOH . D 4 HOH A 29 529 35 HOH HOH . D 4 HOH A 30 530 56 HOH HOH . D 4 HOH A 31 531 43 HOH HOH . D 4 HOH A 32 532 42 HOH HOH . D 4 HOH A 33 533 33 HOH HOH . D 4 HOH A 34 534 36 HOH HOH . D 4 HOH A 35 535 10 HOH HOH . D 4 HOH A 36 536 45 HOH HOH . D 4 HOH A 37 537 44 HOH HOH . D 4 HOH A 38 538 61 HOH HOH . D 4 HOH A 39 539 34 HOH HOH . D 4 HOH A 40 540 31 HOH HOH . D 4 HOH A 41 541 18 HOH HOH . D 4 HOH A 42 542 60 HOH HOH . D 4 HOH A 43 543 25 HOH HOH . D 4 HOH A 44 544 29 HOH HOH . D 4 HOH A 45 545 55 HOH HOH . D 4 HOH A 46 546 1 HOH HOH . D 4 HOH A 47 547 46 HOH HOH . D 4 HOH A 48 548 26 HOH HOH . D 4 HOH A 49 549 54 HOH HOH . D 4 HOH A 50 550 39 HOH HOH . D 4 HOH A 51 551 28 HOH HOH . D 4 HOH A 52 552 30 HOH HOH . D 4 HOH A 53 553 51 HOH HOH . D 4 HOH A 54 554 48 HOH HOH . D 4 HOH A 55 555 53 HOH HOH . D 4 HOH A 56 556 57 HOH HOH . D 4 HOH A 57 557 23 HOH HOH . D 4 HOH A 58 558 64 HOH HOH . D 4 HOH A 59 559 59 HOH HOH . D 4 HOH A 60 560 47 HOH HOH . D 4 HOH A 61 561 58 HOH HOH . D 4 HOH A 62 562 37 HOH HOH . D 4 HOH A 63 563 24 HOH HOH . D 4 HOH A 64 564 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 HGJ . . . C 3 -1.671 31.584 -14.943 1 51.97 ? C18 HGJ 402 A 1 HETATM 2 C C17 HGJ . . . C 3 -2.533 32.492 -14.307 1 55.86 ? C17 HGJ 402 A 1 HETATM 3 C C16 HGJ . . . C 3 -3.697 32.066 -13.656 1 44.04 ? C16 HGJ 402 A 1 HETATM 4 C C15 HGJ . . . C 3 -4.031 30.708 -13.623 1 39.29 ? C15 HGJ 402 A 1 HETATM 5 C C14 HGJ . . . C 3 -3.182 29.786 -14.261 1 41.61 ? C14 HGJ 402 A 1 HETATM 6 C C12 HGJ . . . C 3 -2.209 28.064 -15.069 1 40.95 ? C12 HGJ 402 A 1 HETATM 7 C C01 HGJ . . . C 3 1.323 24.905 -15.848 1 49.45 ? C01 HGJ 402 A 1 HETATM 8 C C02 HGJ . . . C 3 0.224 24.543 -14.879 1 52.12 ? C02 HGJ 402 A 1 HETATM 9 C C05 HGJ . . . C 3 -2.072 22.288 -16.518 1 51.08 ? C05 HGJ 402 A 1 HETATM 10 C C06 HGJ . . . C 3 -2.223 20.949 -17.089 1 40.25 ? C06 HGJ 402 A 1 HETATM 11 C C07 HGJ . . . C 3 -2.932 23.354 -16.387 1 36.28 ? C07 HGJ 402 A 1 HETATM 12 C C08 HGJ . . . C 3 -2.182 24.364 -15.754 1 37.89 ? C08 HGJ 402 A 1 HETATM 13 C C09 HGJ . . . C 3 -2.733 25.7 -15.386 1 35.93 ? C09 HGJ 402 A 1 HETATM 14 C C19 HGJ . . . C 3 -2.025 30.244 -14.897 1 49.87 ? C19 HGJ 402 A 1 HETATM 15 C C21 HGJ . . . C 3 -0.219 29.061 -16.202 1 63.86 ? C21 HGJ 402 A 1 HETATM 16 C C22 HGJ . . . C 3 1.149 28.913 -15.549 1 52.31 ? C22 HGJ 402 A 1 HETATM 17 C C24 HGJ . . . C 3 2.233 28.971 -16.614 1 62.7 ? C24 HGJ 402 A 1 HETATM 18 C C25 HGJ . . . C 3 2.904 27.821 -17.047 1 57.19 ? C25 HGJ 402 A 1 HETATM 19 C C26 HGJ . . . C 3 3.893 27.92 -18.041 1 47.56 ? C26 HGJ 402 A 1 HETATM 20 C C27 HGJ . . . C 3 4.194 29.165 -18.598 1 46.04 ? C27 HGJ 402 A 1 HETATM 21 C C28 HGJ . . . C 3 3.524 30.307 -18.174 1 58.07 ? C28 HGJ 402 A 1 HETATM 22 C C29 HGJ . . . C 3 2.537 30.206 -17.19 1 57.03 ? C29 HGJ 402 A 1 HETATM 23 C C30 HGJ . . . C 3 -4.559 33.041 -12.978 1 41.94 ? C30 HGJ 402 A 1 HETATM 24 N N03 HGJ . . . C 3 -0.923 23.959 -15.511 1 54.01 ? N03 HGJ 402 A 1 HETATM 25 N N04 HGJ . . . C 3 -0.9 22.704 -15.982 1 36.9 ? N04 HGJ 402 A 1 HETATM 26 N N11 HGJ . . . C 3 -1.871 26.775 -15.406 1 31.31 ? N11 HGJ 402 A 1 HETATM 27 N N13 HGJ . . . C 3 -3.283 28.421 -14.38 1 38.88 ? N13 HGJ 402 A 1 HETATM 28 N N20 HGJ . . . C 3 -1.421 29.116 -15.39 1 50.04 ? N20 HGJ 402 A 1 HETATM 29 N N31 HGJ . . . C 3 -5.58 32.556 -12.152 1 43.3 ? N31 HGJ 402 A 1 HETATM 30 O O10 HGJ . . . C 3 -3.92 25.871 -15.102 1 40.86 ? O10 HGJ 402 A 1 HETATM 31 O O23 HGJ . . . C 3 1.319 29.999 -14.641 1 44.73 ? O23 HGJ 402 A 1 HETATM 32 O O32 HGJ . . . C 3 -4.388 34.269 -13.106 1 42.43 ? O32 HGJ 402 A 1 HETATM 33 H H45 HGJ . . . C 3 -0.909 31.877 -15.387 1 62.43 ? H45 HGJ 402 A 1 HETATM 34 H H44 HGJ . . . C 3 -2.319 33.396 -14.328 1 67.1 ? H44 HGJ 402 A 1 HETATM 35 H H43 HGJ . . . C 3 -4.792 30.414 -13.179 1 47.21 ? H43 HGJ 402 A 1 HETATM 36 H H34 HGJ . . . C 3 2.05 25.282 -15.388 1 59.4 ? H34 HGJ 402 A 1 HETATM 37 H H35 HGJ . . . C 3 1.023 25.527 -16.484 1 59.4 ? H35 HGJ 402 A 1 HETATM 38 H H33 HGJ . . . C 3 1.63 24.148 -16.31 1 59.4 ? H33 HGJ 402 A 1 HETATM 39 H H36 HGJ . . . C 3 -0.065 25.305 -14.413 1 62.61 ? H36 HGJ 402 A 1 HETATM 40 H H37 HGJ . . . C 3 0.539 23.932 -14.24 1 62.61 ? H37 HGJ 402 A 1 HETATM 41 H H39 HGJ . . . C 3 -2.847 20.924 -17.791 1 48.37 ? H39 HGJ 402 A 1 HETATM 42 H H38 HGJ . . . C 3 -2.509 20.328 -16.445 1 48.37 ? H38 HGJ 402 A 1 HETATM 43 H H40 HGJ . . . C 3 -1.423 20.62 -17.454 1 48.37 ? H40 HGJ 402 A 1 HETATM 44 H H41 HGJ . . . C 3 -3.822 23.424 -16.645 1 43.6 ? H41 HGJ 402 A 1 HETATM 45 H H46 HGJ . . . C 3 -0.337 28.379 -16.837 1 76.7 ? H46 HGJ 402 A 1 HETATM 46 H H47 HGJ . . . C 3 -0.216 29.846 -16.717 1 76.7 ? H47 HGJ 402 A 1 HETATM 47 H H48 HGJ . . . C 3 1.209 28.115 -15.058 1 62.83 ? H48 HGJ 402 A 1 HETATM 48 H H50 HGJ . . . C 3 2.708 26.992 -16.678 1 68.69 ? H50 HGJ 402 A 1 HETATM 49 H H51 HGJ . . . C 3 4.345 27.16 -18.326 1 57.14 ? H51 HGJ 402 A 1 HETATM 50 H H52 HGJ . . . C 3 4.848 29.23 -19.255 1 55.32 ? H52 HGJ 402 A 1 HETATM 51 H H53 HGJ . . . C 3 3.726 31.133 -18.549 1 69.75 ? H53 HGJ 402 A 1 HETATM 52 H H54 HGJ . . . C 3 2.096 30.973 -16.91 1 68.51 ? H54 HGJ 402 A 1 HETATM 53 H H42 HGJ . . . C 3 -1.035 26.644 -15.599 1 37.64 ? H42 HGJ 402 A 1 HETATM 54 H H55 HGJ . . . C 3 -5.724 31.716 -12.037 1 52.03 ? H55 HGJ 402 A 1 HETATM 55 H H56 HGJ . . . C 3 -6.109 33.088 -11.732 1 52.03 ? H56 HGJ 402 A 1 HETATM 56 H H49 HGJ . . . C 3 2.013 29.839 -14.212 1 53.74 ? H49 HGJ 402 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 56 #