data_6DXH # _model_server_result.job_id frG2068XYd-CMKG3B0NVuw _model_server_result.datetime_utc '2024-12-13 14:06:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 6DXH # _exptl.entry_id 6DXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 234.291 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(4-tert-butylphenyl)-4-oxobutanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DXH _cell.length_a 47.69 _cell.length_b 81.5 _cell.length_c 99.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 195 1_555 A SG CYS 26 A CYS 195 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc1 A SG CYS 30 A CYS 199 1_555 I ZN ZN . A ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc2 A SG CYS 33 A CYS 202 1_555 I ZN ZN . A ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc3 A SG CYS 50 A CYS 219 1_555 I ZN ZN . A ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 A ND1 HIS 63 A HIS 232 1_555 I ZN ZN . A ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'C14 H18 O3' _chem_comp.formula_weight 234.291 _chem_comp.id HH4 _chem_comp.mon_nstd_flag . _chem_comp.name '4-(4-tert-butylphenyl)-4-oxobutanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C1 HH4 sing 129 n n C2 C1 HH4 sing 130 n n C1 C4 HH4 sing 131 n n C1 C HH4 sing 132 n n C4 C5 HH4 doub 133 n y C4 C9 HH4 sing 134 n y C5 C6 HH4 sing 135 n y C9 C8 HH4 doub 136 n y C6 C7 HH4 doub 137 n y C8 C7 HH4 sing 138 n y C7 C10 HH4 sing 139 n n O1 C13 HH4 doub 140 n n C10 O2 HH4 doub 141 n n C10 C11 HH4 sing 142 n n C11 C12 HH4 sing 143 n n C13 O HH4 sing 144 n n C13 C12 HH4 sing 145 n n C2 H1 HH4 sing 146 n n C2 H2 HH4 sing 147 n n C2 H3 HH4 sing 148 n n C3 H4 HH4 sing 149 n n C3 H5 HH4 sing 150 n n C3 H6 HH4 sing 151 n n C6 H7 HH4 sing 152 n n C8 H8 HH4 sing 153 n n C12 H9 HH4 sing 154 n n C12 H10 HH4 sing 155 n n C9 H11 HH4 sing 156 n n C5 H12 HH4 sing 157 n n C11 H13 HH4 sing 158 n n C11 H14 HH4 sing 159 n n O H15 HH4 sing 160 n n C H16 HH4 sing 161 n n C H17 HH4 sing 162 n n C H18 HH4 sing 163 n n # _atom_sites.entry_id 6DXH _atom_sites.fract_transf_matrix[1][1] 0.020969 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX A 1 301 301 UNX UNX . C 2 UNX A 1 302 401 UNX UNX . D 2 UNX A 1 303 501 UNX UNX . E 2 UNX A 1 304 601 UNX UNX . F 2 UNX A 1 305 701 UNX UNX . G 2 UNX A 1 306 801 UNX UNX . H 2 UNX A 1 307 901 UNX UNX . I 3 ZN A 1 308 1 ZN ZN . J 4 HH4 A 1 309 2 HH4 201 . K 5 HOH A 1 401 30 HOH HOH . K 5 HOH A 2 402 28 HOH HOH . K 5 HOH A 3 403 27 HOH HOH . K 5 HOH A 4 404 10 HOH HOH . K 5 HOH A 5 405 21 HOH HOH . K 5 HOH A 6 406 18 HOH HOH . K 5 HOH A 7 407 14 HOH HOH . K 5 HOH A 8 408 23 HOH HOH . K 5 HOH A 9 409 65 HOH HOH . K 5 HOH A 10 410 24 HOH HOH . K 5 HOH A 11 411 60 HOH HOH . K 5 HOH A 12 412 6 HOH HOH . K 5 HOH A 13 413 26 HOH HOH . K 5 HOH A 14 414 57 HOH HOH . K 5 HOH A 15 415 1 HOH HOH . K 5 HOH A 16 416 63 HOH HOH . K 5 HOH A 17 417 69 HOH HOH . K 5 HOH A 18 418 50 HOH HOH . K 5 HOH A 19 419 31 HOH HOH . K 5 HOH A 20 420 12 HOH HOH . K 5 HOH A 21 421 19 HOH HOH . K 5 HOH A 22 422 8 HOH HOH . K 5 HOH A 23 423 22 HOH HOH . K 5 HOH A 24 424 59 HOH HOH . K 5 HOH A 25 425 13 HOH HOH . K 5 HOH A 26 426 9 HOH HOH . K 5 HOH A 27 427 61 HOH HOH . K 5 HOH A 28 428 2 HOH HOH . K 5 HOH A 29 429 5 HOH HOH . K 5 HOH A 30 430 39 HOH HOH . K 5 HOH A 31 431 34 HOH HOH . K 5 HOH A 32 432 25 HOH HOH . K 5 HOH A 33 433 29 HOH HOH . K 5 HOH A 34 434 37 HOH HOH . K 5 HOH A 35 435 52 HOH HOH . K 5 HOH A 36 436 67 HOH HOH . K 5 HOH A 37 437 47 HOH HOH . K 5 HOH A 38 438 68 HOH HOH . K 5 HOH A 39 439 70 HOH HOH . K 5 HOH A 40 440 11 HOH HOH . K 5 HOH A 41 441 58 HOH HOH . K 5 HOH A 42 442 20 HOH HOH . K 5 HOH A 43 443 33 HOH HOH . K 5 HOH A 44 444 4 HOH HOH . K 5 HOH A 45 445 45 HOH HOH . K 5 HOH A 46 446 44 HOH HOH . K 5 HOH A 47 447 55 HOH HOH . K 5 HOH A 48 448 3 HOH HOH . K 5 HOH A 49 449 53 HOH HOH . K 5 HOH A 50 450 43 HOH HOH . K 5 HOH A 51 451 56 HOH HOH . K 5 HOH A 52 452 15 HOH HOH . K 5 HOH A 53 453 62 HOH HOH . K 5 HOH A 54 454 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 HH4 . . . J 4 6.705 23.11 7.449 1 37.55 ? C4 HH4 309 A 1 HETATM 2 C C2 HH4 . . . J 4 8.891 22.313 6.403 1 41.81 ? C2 HH4 309 A 1 HETATM 3 C C3 HH4 . . . J 4 7.779 24.377 5.588 1 43.99 ? C3 HH4 309 A 1 HETATM 4 C C1 HH4 . . . J 4 8.043 23.512 6.82 1 42.28 ? C1 HH4 309 A 1 HETATM 5 C C7 HH4 . . . J 4 4.384 22.582 8.932 1 34.42 ? C7 HH4 309 A 1 HETATM 6 C C6 HH4 . . . J 4 4.613 23.844 8.401 1 36.34 ? C6 HH4 309 A 1 HETATM 7 C C8 HH4 . . . J 4 5.293 21.564 8.655 1 35.44 ? C8 HH4 309 A 1 HETATM 8 C C12 HH4 . . . J 4 1.759 21.107 11.408 1 31.07 ? C12 HH4 309 A 1 HETATM 9 C C13 HH4 . . . J 4 0.431 21.202 10.69 1 30.96 ? C13 HH4 309 A 1 HETATM 10 C C9 HH4 . . . J 4 6.433 21.823 7.909 1 35.61 ? C9 HH4 309 A 1 HETATM 11 C C5 HH4 . . . J 4 5.762 24.106 7.685 1 36.23 ? C5 HH4 309 A 1 HETATM 12 C C11 HH4 . . . J 4 2.961 21.084 10.474 1 31.35 ? C11 HH4 309 A 1 HETATM 13 O O1 HH4 . . . J 4 0.331 20.818 9.473 1 33.34 ? O1 HH4 309 A 1 HETATM 14 O O2 HH4 . . . J 4 2.401 23.324 9.961 1 34.68 ? O2 HH4 309 A 1 HETATM 15 C C10 HH4 . . . J 4 3.193 22.412 9.81 1 34.9 ? C10 HH4 309 A 1 HETATM 16 O O HH4 . . . J 4 -0.508 21.653 11.369 1 29 ? O HH4 309 A 1 HETATM 17 C C HH4 . . . J 4 8.815 24.377 7.833 1 44.23 ? C HH4 309 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 408 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #