data_6DXK
#
_model_server_result.job_id            RmOdV8rmUSc2jln2JiWeaA 
_model_server_result.datetime_utc      '2024-11-09 02:49:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dxk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":801}' 
#
_entry.id    6DXK 
#
_exptl.entry_id    6DXK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              471.673 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            '(8S,11R,13S,14S,17S)-11-[4-(dimethylamino)phenyl]-17-(3,3-dimethylbut-1-yn-1-yl)-17-hydroxy-13-methyl-1,2,6,7,8,11,12,13,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthren-3-one (non-preferred name)' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DXK 
_cell.length_a            79.193 
_cell.length_b            98.694 
_cell.length_c            100.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DXK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 -39.5965 0 50.205 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C32 H41 N O2' 
_chem_comp.formula_weight    471.673 
_chem_comp.id                HJ4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(8S,11R,13S,14S,17S)-11-[4-(dimethylamino)phenyl]-17-(3,3-dimethylbut-1-yn-1-yl)-17-hydroxy-13-methyl-1,2,6,7,8,11,12,13,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthren-3-one (non-preferred name)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 HJ4 doub 150 n n 
C36 C2 HJ4 sing 151 n n 
C36 C35 HJ4 doub 152 n n 
C2 C3 HJ4 sing 153 n n 
C34 C35 HJ4 sing 154 n n 
C34 C33 HJ4 sing 155 n n 
C35 C5 HJ4 sing 156 n n 
C33 C32 HJ4 sing 157 n n 
C3 C4 HJ4 sing 158 n n 
C5 C4 HJ4 sing 159 n n 
C5 C6 HJ4 doub 160 n n 
C30 C27 HJ4 sing 161 n n 
C32 C6 HJ4 sing 162 n n 
C32 C21 HJ4 sing 163 n n 
C6 C7 HJ4 sing 164 n n 
C22 C21 HJ4 sing 165 n n 
C22 C23 HJ4 sing 166 n n 
C29 C27 HJ4 sing 167 n n 
C21 C19 HJ4 sing 168 n n 
C27 C26 HJ4 sing 169 n n 
C27 C28 HJ4 sing 170 n n 
C26 C25 HJ4 trip 171 n n 
C23 C24 HJ4 sing 172 n n 
C7 C18 HJ4 sing 173 n n 
C7 C9 HJ4 sing 174 n n 
C25 C24 HJ4 sing 175 n n 
C19 C18 HJ4 sing 176 n n 
C19 C24 HJ4 sing 177 n n 
C19 C20 HJ4 sing 178 n n 
C24 O31 HJ4 sing 179 n n 
C17 C9 HJ4 doub 180 n y 
C17 C16 HJ4 sing 181 n y 
C9 C10 HJ4 sing 182 n y 
C16 C12 HJ4 doub 183 n y 
C10 C11 HJ4 doub 184 n y 
C12 C11 HJ4 sing 185 n y 
C12 N13 HJ4 sing 186 n n 
N13 C15 HJ4 sing 187 n n 
N13 C14 HJ4 sing 188 n n 
C3 H1 HJ4 sing 189 n n 
C3 H2 HJ4 sing 190 n n 
C4 H3 HJ4 sing 191 n n 
C4 H4 HJ4 sing 192 n n 
C7 H5 HJ4 sing 193 n n 
C11 H6 HJ4 sing 194 n n 
C15 H7 HJ4 sing 195 n n 
C15 H8 HJ4 sing 196 n n 
C15 H9 HJ4 sing 197 n n 
C16 H10 HJ4 sing 198 n n 
C17 H11 HJ4 sing 199 n n 
C18 H12 HJ4 sing 200 n n 
C18 H13 HJ4 sing 201 n n 
C21 H14 HJ4 sing 202 n n 
C23 H15 HJ4 sing 203 n n 
C23 H16 HJ4 sing 204 n n 
C30 H17 HJ4 sing 205 n n 
C30 H18 HJ4 sing 206 n n 
C30 H19 HJ4 sing 207 n n 
C32 H20 HJ4 sing 208 n n 
C33 H21 HJ4 sing 209 n n 
C33 H22 HJ4 sing 210 n n 
C34 H23 HJ4 sing 211 n n 
C34 H24 HJ4 sing 212 n n 
C36 H25 HJ4 sing 213 n n 
C10 H26 HJ4 sing 214 n n 
C14 H27 HJ4 sing 215 n n 
C14 H28 HJ4 sing 216 n n 
C14 H29 HJ4 sing 217 n n 
C20 H30 HJ4 sing 218 n n 
C20 H31 HJ4 sing 219 n n 
C20 H32 HJ4 sing 220 n n 
C22 H33 HJ4 sing 221 n n 
C22 H34 HJ4 sing 222 n n 
C28 H35 HJ4 sing 223 n n 
C28 H36 HJ4 sing 224 n n 
C28 H37 HJ4 sing 225 n n 
C29 H38 HJ4 sing 226 n n 
C29 H39 HJ4 sing 227 n n 
C29 H40 HJ4 sing 228 n n 
O31 H41 HJ4 sing 229 n n 
#
_atom_sites.entry_id                     6DXK 
_atom_sites.fract_transf_matrix[1][1]    0.012627 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010132 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009959 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HJ4 A 1 801 1 HJ4 INX . 
D 2 HJ4 B 1 801 2 HJ4 INX . 
E 3 HOH A 1 901 2 HOH HOH . 
F 3 HOH B 1 901 1 HOH HOH . 
F 3 HOH B 2 902 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 HJ4 . . . C 2 -21.15 -16.851 -31.03 1 45.61 ? C2 HJ4 801 A 1 
HETATM 2 C C3 HJ4 . . . C 2 -21.842 -17.274 -29.763 1 45.52 ? C3 HJ4 801 A 1 
HETATM 3 C C4 HJ4 . . . C 2 -21.557 -16.375 -28.548 1 40.29 ? C4 HJ4 801 A 1 
HETATM 4 C C5 HJ4 . . . C 2 -21.223 -14.921 -28.888 1 39.18 ? C5 HJ4 801 A 1 
HETATM 5 C C6 HJ4 . . . C 2 -21.482 -13.858 -28.031 1 42.27 ? C6 HJ4 801 A 1 
HETATM 6 C C7 HJ4 . . . C 2 -22.082 -14.062 -26.646 1 46.83 ? C7 HJ4 801 A 1 
HETATM 7 C C11 HJ4 . . . C 2 -20.508 -15.501 -23.482 1 56.21 ? C11 HJ4 801 A 1 
HETATM 8 C C12 HJ4 . . . C 2 -19.126 -15.497 -23.737 1 61.26 ? C12 HJ4 801 A 1 
HETATM 9 N N13 HJ4 . . . C 2 -18.2 -15.938 -22.769 1 67.31 ? N13 HJ4 801 A 1 
HETATM 10 C C15 HJ4 . . . C 2 -17.009 -15.13 -22.445 1 79.77 ? C15 HJ4 801 A 1 
HETATM 11 C C16 HJ4 . . . C 2 -18.704 -15.002 -24.976 1 61.4 ? C16 HJ4 801 A 1 
HETATM 12 C C17 HJ4 . . . C 2 -19.612 -14.547 -25.919 1 51.66 ? C17 HJ4 801 A 1 
HETATM 13 C C18 HJ4 . . . C 2 -22.854 -12.817 -26.1 1 44.45 ? C18 HJ4 801 A 1 
HETATM 14 C C19 HJ4 . . . C 2 -22.114 -11.463 -26.265 1 44.57 ? C19 HJ4 801 A 1 
HETATM 15 C C21 HJ4 . . . C 2 -21.84 -11.34 -27.801 1 41.58 ? C21 HJ4 801 A 1 
HETATM 16 C C23 HJ4 . . . C 2 -22.082 -9.122 -26.858 1 44.81 ? C23 HJ4 801 A 1 
HETATM 17 C C24 HJ4 . . . C 2 -22.907 -10.138 -26.032 1 46.73 ? C24 HJ4 801 A 1 
HETATM 18 C C27 HJ4 . . . C 2 -26.807 -10.029 -27.443 1 54.25 ? C27 HJ4 801 A 1 
HETATM 19 C C30 HJ4 . . . C 2 -26.988 -10.988 -28.626 1 53.46 ? C30 HJ4 801 A 1 
HETATM 20 C C32 HJ4 . . . C 2 -21.064 -12.454 -28.439 1 40.19 ? C32 HJ4 801 A 1 
HETATM 21 C C33 HJ4 . . . C 2 -20.814 -12.235 -29.939 1 46.38 ? C33 HJ4 801 A 1 
HETATM 22 C C34 HJ4 . . . C 2 -19.887 -13.342 -30.458 1 46.97 ? C34 HJ4 801 A 1 
HETATM 23 C C35 HJ4 . . . C 2 -20.57 -14.662 -30.188 1 38.75 ? C35 HJ4 801 A 1 
HETATM 24 C C36 HJ4 . . . C 2 -20.554 -15.6 -31.177 1 37.54 ? C36 HJ4 801 A 1 
HETATM 25 O O1 HJ4 . . . C 2 -21.096 -17.633 -31.953 1 56.82 ? O1 HJ4 801 A 1 
HETATM 26 C C9 HJ4 . . . C 2 -21.001 -14.568 -25.676 1 47.79 ? C9 HJ4 801 A 1 
HETATM 27 C C10 HJ4 . . . C 2 -21.414 -15.044 -24.434 1 52.23 ? C10 HJ4 801 A 1 
HETATM 28 C C14 HJ4 . . . C 2 -18.431 -17.156 -21.985 1 64.7 ? C14 HJ4 801 A 1 
HETATM 29 C C20 HJ4 . . . C 2 -20.84 -11.461 -25.369 1 48.53 ? C20 HJ4 801 A 1 
HETATM 30 C C22 HJ4 . . . C 2 -21.243 -9.933 -27.875 1 44.87 ? C22 HJ4 801 A 1 
HETATM 31 C C25 HJ4 . . . C 2 -24.318 -10.112 -26.506 1 50.6 ? C25 HJ4 801 A 1 
HETATM 32 C C26 HJ4 . . . C 2 -25.44 -10.119 -26.893 1 45.32 ? C26 HJ4 801 A 1 
HETATM 33 C C28 HJ4 . . . C 2 -27.789 -10.465 -26.374 1 55.9 ? C28 HJ4 801 A 1 
HETATM 34 C C29 HJ4 . . . C 2 -27.137 -8.589 -27.845 1 51.47 ? C29 HJ4 801 A 1 
HETATM 35 O O31 HJ4 . . . C 2 -22.912 -9.71 -24.667 1 43.04 ? O31 HJ4 801 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#