data_6DXT
#
_model_server_result.job_id            Es17-md1lplZCaahCYYBGQ 
_model_server_result.datetime_utc      '2025-08-03 13:50:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dxt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":701}' 
#
_entry.id    6DXT 
#
_exptl.entry_id    6DXT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              218.209 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-(5-phenyl-1,3,4-oxadiazol-2-yl)propanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.29 
_cell.angle_gamma         90 
_cell.entry_id            6DXT 
_cell.length_a            61.09 
_cell.length_b            85.44 
_cell.length_c            59.74 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DXT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 195 1_555 B SG CYS 26 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc1 A SG CYS 30 A CYS 199 1_555 F ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc2 A SG CYS 33 A CYS 202 1_555 F ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc3 A SG CYS 50 A CYS 219 1_555 F ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc4 A ND1 HIS 63 A HIS 232 1_555 F ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc5 B SG CYS 30 B CYS 199 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc6 B SG CYS 33 B CYS 202 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc7 B SG CYS 50 B CYS 219 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc8 B ND1 HIS 63 B HIS 232 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
#
_chem_comp.formula           'C11 H10 N2 O3' 
_chem_comp.formula_weight    218.209 
_chem_comp.id                HHY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-(5-phenyl-1,3,4-oxadiazol-2-yl)propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 HHY doub 138 n y 
C8 C9 HHY sing 139 n y 
C7 C6 HHY sing 140 n y 
C9 C4 HHY doub 141 n y 
C6 C5 HHY doub 142 n y 
C4 C5 HHY sing 143 n y 
C4 C3 HHY sing 144 n n 
C3 O HHY sing 145 n y 
C3 N1 HHY doub 146 n y 
O C2 HHY sing 147 n y 
N1 N HHY sing 148 n y 
C2 N HHY doub 149 n y 
C2 C1 HHY sing 150 n n 
O2 C10 HHY doub 151 n n 
C1 C HHY sing 152 n n 
C10 C HHY sing 153 n n 
C10 O1 HHY sing 154 n n 
O1 H1 HHY sing 155 n n 
C1 H2 HHY sing 156 n n 
C1 H3 HHY sing 157 n n 
C5 H4 HHY sing 158 n n 
C6 H5 HHY sing 159 n n 
C7 H6 HHY sing 160 n n 
C8 H7 HHY sing 161 n n 
C9 H8 HHY sing 162 n n 
C H9 HHY sing 163 n n 
C H10 HHY sing 164 n n 
#
_atom_sites.entry_id                     6DXT 
_atom_sites.fract_transf_matrix[1][1]    0.016369 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002972 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011704 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017013 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HHY A 1 701 701 HHY 180 . 
D 3 UNX A 1 702 801 UNX UNX . 
E 3 UNX A 1 703 901 UNX UNX . 
F 4 ZN A 1 704 1 ZN ZN . 
G 5 EDO B 1 301 301 EDO EDO . 
H 5 EDO B 1 302 601 EDO EDO . 
I 4 ZN B 1 303 2 ZN ZN . 
J 6 HOH A 1 801 444 HOH HOH . 
J 6 HOH A 2 802 64 HOH HOH . 
J 6 HOH A 3 803 156 HOH HOH . 
J 6 HOH A 4 804 77 HOH HOH . 
J 6 HOH A 5 805 555 HOH HOH . 
J 6 HOH A 6 806 442 HOH HOH . 
J 6 HOH A 7 807 131 HOH HOH . 
J 6 HOH A 8 808 2 HOH HOH . 
J 6 HOH A 9 809 567 HOH HOH . 
J 6 HOH A 10 810 451 HOH HOH . 
J 6 HOH A 11 811 49 HOH HOH . 
J 6 HOH A 12 812 78 HOH HOH . 
J 6 HOH A 13 813 336 HOH HOH . 
J 6 HOH A 14 814 117 HOH HOH . 
J 6 HOH A 15 815 576 HOH HOH . 
J 6 HOH A 16 816 14 HOH HOH . 
J 6 HOH A 17 817 558 HOH HOH . 
J 6 HOH A 18 818 349 HOH HOH . 
J 6 HOH A 19 819 62 HOH HOH . 
J 6 HOH A 20 820 44 HOH HOH . 
J 6 HOH A 21 821 450 HOH HOH . 
J 6 HOH A 22 822 31 HOH HOH . 
J 6 HOH A 23 823 472 HOH HOH . 
J 6 HOH A 24 824 5 HOH HOH . 
J 6 HOH A 25 825 59 HOH HOH . 
J 6 HOH A 26 826 458 HOH HOH . 
J 6 HOH A 27 827 519 HOH HOH . 
J 6 HOH A 28 828 37 HOH HOH . 
J 6 HOH A 29 829 453 HOH HOH . 
J 6 HOH A 30 830 75 HOH HOH . 
J 6 HOH A 31 831 10 HOH HOH . 
J 6 HOH A 32 832 1 HOH HOH . 
J 6 HOH A 33 833 33 HOH HOH . 
J 6 HOH A 34 834 53 HOH HOH . 
J 6 HOH A 35 835 485 HOH HOH . 
J 6 HOH A 36 836 478 HOH HOH . 
J 6 HOH A 37 837 232 HOH HOH . 
J 6 HOH A 38 838 60 HOH HOH . 
J 6 HOH A 39 839 36 HOH HOH . 
J 6 HOH A 40 840 18 HOH HOH . 
J 6 HOH A 41 841 556 HOH HOH . 
J 6 HOH A 42 842 56 HOH HOH . 
J 6 HOH A 43 843 55 HOH HOH . 
J 6 HOH A 44 844 467 HOH HOH . 
J 6 HOH A 45 845 86 HOH HOH . 
J 6 HOH A 46 846 443 HOH HOH . 
J 6 HOH A 47 847 8 HOH HOH . 
J 6 HOH A 48 848 433 HOH HOH . 
J 6 HOH A 49 849 462 HOH HOH . 
J 6 HOH A 50 850 3 HOH HOH . 
J 6 HOH A 51 851 97 HOH HOH . 
J 6 HOH A 52 852 449 HOH HOH . 
J 6 HOH A 53 853 157 HOH HOH . 
J 6 HOH A 54 854 46 HOH HOH . 
J 6 HOH A 55 855 447 HOH HOH . 
J 6 HOH A 56 856 471 HOH HOH . 
J 6 HOH A 57 857 522 HOH HOH . 
J 6 HOH A 58 858 35 HOH HOH . 
J 6 HOH A 59 859 439 HOH HOH . 
J 6 HOH A 60 860 464 HOH HOH . 
J 6 HOH A 61 861 481 HOH HOH . 
J 6 HOH A 62 862 42 HOH HOH . 
J 6 HOH A 63 863 565 HOH HOH . 
J 6 HOH A 64 864 509 HOH HOH . 
J 6 HOH A 65 865 494 HOH HOH . 
J 6 HOH A 66 866 463 HOH HOH . 
J 6 HOH A 67 867 61 HOH HOH . 
J 6 HOH A 68 868 201 HOH HOH . 
J 6 HOH A 69 869 21 HOH HOH . 
J 6 HOH A 70 870 498 HOH HOH . 
J 6 HOH A 71 871 89 HOH HOH . 
J 6 HOH A 72 872 438 HOH HOH . 
J 6 HOH A 73 873 552 HOH HOH . 
J 6 HOH A 74 874 182 HOH HOH . 
J 6 HOH A 75 875 4 HOH HOH . 
J 6 HOH A 76 876 12 HOH HOH . 
J 6 HOH A 77 877 202 HOH HOH . 
J 6 HOH A 78 878 568 HOH HOH . 
J 6 HOH A 79 879 563 HOH HOH . 
J 6 HOH A 80 880 460 HOH HOH . 
J 6 HOH A 81 881 521 HOH HOH . 
J 6 HOH A 82 882 43 HOH HOH . 
J 6 HOH A 83 883 569 HOH HOH . 
J 6 HOH A 84 884 520 HOH HOH . 
J 6 HOH A 85 885 191 HOH HOH . 
J 6 HOH A 86 886 234 HOH HOH . 
J 6 HOH A 87 887 179 HOH HOH . 
J 6 HOH A 88 888 189 HOH HOH . 
J 6 HOH A 89 889 65 HOH HOH . 
J 6 HOH A 90 890 510 HOH HOH . 
J 6 HOH A 91 891 34 HOH HOH . 
J 6 HOH A 92 892 225 HOH HOH . 
J 6 HOH A 93 893 526 HOH HOH . 
J 6 HOH A 94 894 105 HOH HOH . 
J 6 HOH A 95 895 41 HOH HOH . 
J 6 HOH A 96 896 129 HOH HOH . 
J 6 HOH A 97 897 25 HOH HOH . 
J 6 HOH A 98 898 130 HOH HOH . 
K 6 HOH B 1 401 562 HOH HOH . 
K 6 HOH B 2 402 573 HOH HOH . 
K 6 HOH B 3 403 24 HOH HOH . 
K 6 HOH B 4 404 468 HOH HOH . 
K 6 HOH B 5 405 461 HOH HOH . 
K 6 HOH B 6 406 85 HOH HOH . 
K 6 HOH B 7 407 486 HOH HOH . 
K 6 HOH B 8 408 483 HOH HOH . 
K 6 HOH B 9 409 572 HOH HOH . 
K 6 HOH B 10 410 574 HOH HOH . 
K 6 HOH B 11 411 40 HOH HOH . 
K 6 HOH B 12 412 186 HOH HOH . 
K 6 HOH B 13 413 361 HOH HOH . 
K 6 HOH B 14 414 15 HOH HOH . 
K 6 HOH B 15 415 227 HOH HOH . 
K 6 HOH B 16 416 69 HOH HOH . 
K 6 HOH B 17 417 93 HOH HOH . 
K 6 HOH B 18 418 22 HOH HOH . 
K 6 HOH B 19 419 559 HOH HOH . 
K 6 HOH B 20 420 98 HOH HOH . 
K 6 HOH B 21 421 192 HOH HOH . 
K 6 HOH B 22 422 339 HOH HOH . 
K 6 HOH B 23 423 222 HOH HOH . 
K 6 HOH B 24 424 548 HOH HOH . 
K 6 HOH B 25 425 137 HOH HOH . 
K 6 HOH B 26 426 52 HOH HOH . 
K 6 HOH B 27 427 546 HOH HOH . 
K 6 HOH B 28 428 174 HOH HOH . 
K 6 HOH B 29 429 363 HOH HOH . 
K 6 HOH B 30 430 82 HOH HOH . 
K 6 HOH B 31 431 216 HOH HOH . 
K 6 HOH B 32 432 135 HOH HOH . 
K 6 HOH B 33 433 153 HOH HOH . 
K 6 HOH B 34 434 87 HOH HOH . 
K 6 HOH B 35 435 338 HOH HOH . 
K 6 HOH B 36 436 469 HOH HOH . 
K 6 HOH B 37 437 350 HOH HOH . 
K 6 HOH B 38 438 32 HOH HOH . 
K 6 HOH B 39 439 185 HOH HOH . 
K 6 HOH B 40 440 204 HOH HOH . 
K 6 HOH B 41 441 489 HOH HOH . 
K 6 HOH B 42 442 17 HOH HOH . 
K 6 HOH B 43 443 74 HOH HOH . 
K 6 HOH B 44 444 73 HOH HOH . 
K 6 HOH B 45 445 357 HOH HOH . 
K 6 HOH B 46 446 106 HOH HOH . 
K 6 HOH B 47 447 335 HOH HOH . 
K 6 HOH B 48 448 345 HOH HOH . 
K 6 HOH B 49 449 566 HOH HOH . 
K 6 HOH B 50 450 116 HOH HOH . 
K 6 HOH B 51 451 176 HOH HOH . 
K 6 HOH B 52 452 359 HOH HOH . 
K 6 HOH B 53 453 564 HOH HOH . 
K 6 HOH B 54 454 233 HOH HOH . 
K 6 HOH B 55 455 341 HOH HOH . 
K 6 HOH B 56 456 54 HOH HOH . 
K 6 HOH B 57 457 337 HOH HOH . 
K 6 HOH B 58 458 114 HOH HOH . 
K 6 HOH B 59 459 2 HOH HOH . 
K 6 HOH B 60 460 570 HOH HOH . 
K 6 HOH B 61 461 76 HOH HOH . 
K 6 HOH B 62 462 344 HOH HOH . 
K 6 HOH B 63 463 459 HOH HOH . 
K 6 HOH B 64 464 8 HOH HOH . 
K 6 HOH B 65 465 490 HOH HOH . 
K 6 HOH B 66 466 487 HOH HOH . 
K 6 HOH B 67 467 474 HOH HOH . 
K 6 HOH B 68 468 575 HOH HOH . 
K 6 HOH B 69 469 571 HOH HOH . 
K 6 HOH B 70 470 482 HOH HOH . 
K 6 HOH B 71 471 511 HOH HOH . 
K 6 HOH B 72 472 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 HHY . . . C 2 22.071 47.799 -13.52 1 34.37 ? O1 HHY 701 A 1 
HETATM 2 C C1 HHY . . . C 2 21.113 44.582 -15.034 1 34.22 ? C1 HHY 701 A 1 
HETATM 3 O O2 HHY . . . C 2 21.775 47.195 -15.632 1 38 ? O2 HHY 701 A 1 
HETATM 4 C C2 HHY . . . C 2 22.385 44.149 -15.663 1 36.66 ? C2 HHY 701 A 1 
HETATM 5 C C3 HHY . . . C 2 23.651 42.968 -16.909 1 41.97 ? C3 HHY 701 A 1 
HETATM 6 N N1 HHY . . . C 2 24.408 43.838 -16.34 1 40.61 ? N1 HHY 701 A 1 
HETATM 7 C C4 HHY . . . C 2 24.034 41.734 -17.587 1 44.02 ? C4 HHY 701 A 1 
HETATM 8 C C5 HHY . . . C 2 25.329 41.231 -17.455 1 42.56 ? C5 HHY 701 A 1 
HETATM 9 C C6 HHY . . . C 2 25.646 39.976 -17.954 1 47.02 ? C6 HHY 701 A 1 
HETATM 10 C C7 HHY . . . C 2 24.688 39.226 -18.619 1 38.66 ? C7 HHY 701 A 1 
HETATM 11 C C8 HHY . . . C 2 23.419 39.739 -18.803 1 41.56 ? C8 HHY 701 A 1 
HETATM 12 C C9 HHY . . . C 2 23.087 40.986 -18.291 1 38.34 ? C9 HHY 701 A 1 
HETATM 13 C C10 HHY . . . C 2 21.725 46.973 -14.394 1 32.64 ? C10 HHY 701 A 1 
HETATM 14 C C HHY . . . C 2 21.282 45.606 -13.926 1 32.57 ? C HHY 701 A 1 
HETATM 15 O O HHY . . . C 2 22.338 43.109 -16.54 1 39.03 ? O HHY 701 A 1 
HETATM 16 N N HHY . . . C 2 23.572 44.611 -15.511 1 38.25 ? N HHY 701 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#