data_6DXX # _model_server_result.job_id gCDyIbm7PpVQylQSJTDogg _model_server_result.datetime_utc '2024-11-09 01:54:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dxx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 6DXX # _exptl.entry_id 6DXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.13 _cell.angle_gamma 90 _cell.entry_id 6DXX _cell.length_a 76.61 _cell.length_b 99.798 _cell.length_c 92.756 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,N,KA,LA 1 1 C,D,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,MA,NA 2 1 E,F,CA,DA,EA,FA,GA,HA,IA,JA,OA,PA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 L N N ? 5 M N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 Y N N ? 5 DA N N ? 5 FA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 G 1 NAG G 1 NAG 3 n G NAG 2 G 2 NAG G 7 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 103 1_555 A SG CYS 95 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 C SG CYS 85 C CYS 103 1_555 C SG CYS 95 C CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 E SG CYS 85 E CYS 103 1_555 E SG CYS 95 E CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 19 A ASN 37 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 89 A ASN 107 1_555 H C1 NAG . A NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 B ND2 ASN 184 B ASN 309 1_555 K C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 C ND2 ASN 19 C ASN 37 1_555 O C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 D ND2 ASN 184 D ASN 309 1_555 U C1 NAG . D NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 E ND2 ASN 19 E ASN 37 1_555 CA C1 NAG . E NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DXX _atom_sites.fract_transf_matrix[1][1] 0.013053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001401 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 NAG A 1 203 2 NAG NAG . I 5 CL A 1 204 10 CL CL . J 6 TON A 1 205 1 TON TON . K 4 NAG B 1 401 3 NAG NAG . L 5 CL B 1 402 2 CL CL . M 5 CL B 1 403 6 CL CL . N 7 WTF B 1 404 1 WTF WTF . O 4 NAG C 1 201 4 NAG NAG . P 5 CL C 1 202 8 CL CL . Q 5 CL C 1 203 9 CL CL . R 5 CL C 1 204 11 CL CL . S 8 SCN C 1 205 6 SCN SCN . T 6 TON C 1 206 2 TON TON . U 4 NAG D 1 401 5 NAG NAG . V 5 CL D 1 402 3 CL CL . W 5 CL D 1 403 4 CL CL . X 5 CL D 1 404 5 CL CL . Y 5 CL D 1 405 12 CL CL . Z 8 SCN D 1 406 1 SCN SCN . AA 8 SCN D 1 407 2 SCN SCN . BA 7 WTF D 1 408 2 WTF WTF . CA 4 NAG E 1 201 6 NAG NAG . DA 5 CL E 1 202 1 CL CL . EA 6 TON E 1 203 3 TON TON . FA 5 CL F 1 401 7 CL CL . GA 8 SCN F 1 402 3 SCN SCN . HA 8 SCN F 1 403 4 SCN SCN . IA 8 SCN F 1 404 5 SCN SCN . JA 7 WTF F 1 405 3 WTF WTF . KA 9 HOH A 1 301 89 HOH HOH . KA 9 HOH A 2 302 49 HOH HOH . KA 9 HOH A 3 303 191 HOH HOH . KA 9 HOH A 4 304 121 HOH HOH . KA 9 HOH A 5 305 122 HOH HOH . KA 9 HOH A 6 306 140 HOH HOH . KA 9 HOH A 7 307 12 HOH HOH . KA 9 HOH A 8 308 5 HOH HOH . KA 9 HOH A 9 309 124 HOH HOH . KA 9 HOH A 10 310 166 HOH HOH . KA 9 HOH A 11 311 69 HOH HOH . KA 9 HOH A 12 312 189 HOH HOH . KA 9 HOH A 13 313 115 HOH HOH . KA 9 HOH A 14 314 176 HOH HOH . KA 9 HOH A 15 315 126 HOH HOH . KA 9 HOH A 16 316 106 HOH HOH . KA 9 HOH A 17 317 160 HOH HOH . KA 9 HOH A 18 318 142 HOH HOH . KA 9 HOH A 19 319 56 HOH HOH . KA 9 HOH A 20 320 123 HOH HOH . KA 9 HOH A 21 321 103 HOH HOH . LA 9 HOH B 1 501 25 HOH HOH . LA 9 HOH B 2 502 43 HOH HOH . LA 9 HOH B 3 503 88 HOH HOH . LA 9 HOH B 4 504 187 HOH HOH . LA 9 HOH B 5 505 63 HOH HOH . LA 9 HOH B 6 506 42 HOH HOH . LA 9 HOH B 7 507 181 HOH HOH . LA 9 HOH B 8 508 31 HOH HOH . LA 9 HOH B 9 509 7 HOH HOH . LA 9 HOH B 10 510 186 HOH HOH . LA 9 HOH B 11 511 23 HOH HOH . LA 9 HOH B 12 512 200 HOH HOH . LA 9 HOH B 13 513 179 HOH HOH . LA 9 HOH B 14 514 93 HOH HOH . LA 9 HOH B 15 515 24 HOH HOH . LA 9 HOH B 16 516 4 HOH HOH . LA 9 HOH B 17 517 15 HOH HOH . LA 9 HOH B 18 518 33 HOH HOH . LA 9 HOH B 19 519 48 HOH HOH . LA 9 HOH B 20 520 1 HOH HOH . LA 9 HOH B 21 521 197 HOH HOH . LA 9 HOH B 22 522 66 HOH HOH . LA 9 HOH B 23 523 188 HOH HOH . LA 9 HOH B 24 524 127 HOH HOH . LA 9 HOH B 25 525 21 HOH HOH . LA 9 HOH B 26 526 130 HOH HOH . LA 9 HOH B 27 527 113 HOH HOH . LA 9 HOH B 28 528 64 HOH HOH . LA 9 HOH B 29 529 146 HOH HOH . LA 9 HOH B 30 530 39 HOH HOH . LA 9 HOH B 31 531 17 HOH HOH . LA 9 HOH B 32 532 29 HOH HOH . LA 9 HOH B 33 533 79 HOH HOH . LA 9 HOH B 34 534 22 HOH HOH . LA 9 HOH B 35 535 70 HOH HOH . LA 9 HOH B 36 536 58 HOH HOH . LA 9 HOH B 37 537 102 HOH HOH . LA 9 HOH B 38 538 107 HOH HOH . LA 9 HOH B 39 539 84 HOH HOH . LA 9 HOH B 40 540 67 HOH HOH . LA 9 HOH B 41 541 158 HOH HOH . LA 9 HOH B 42 542 118 HOH HOH . LA 9 HOH B 43 543 159 HOH HOH . LA 9 HOH B 44 544 119 HOH HOH . LA 9 HOH B 45 545 116 HOH HOH . LA 9 HOH B 46 546 148 HOH HOH . LA 9 HOH B 47 547 167 HOH HOH . LA 9 HOH B 48 548 129 HOH HOH . LA 9 HOH B 49 549 111 HOH HOH . LA 9 HOH B 50 550 139 HOH HOH . LA 9 HOH B 51 551 125 HOH HOH . LA 9 HOH B 52 552 85 HOH HOH . LA 9 HOH B 53 553 34 HOH HOH . LA 9 HOH B 54 554 128 HOH HOH . LA 9 HOH B 55 555 199 HOH HOH . LA 9 HOH B 56 556 182 HOH HOH . LA 9 HOH B 57 557 132 HOH HOH . LA 9 HOH B 58 558 86 HOH HOH . LA 9 HOH B 59 559 131 HOH HOH . LA 9 HOH B 60 560 95 HOH HOH . LA 9 HOH B 61 561 99 HOH HOH . MA 9 HOH C 1 301 151 HOH HOH . MA 9 HOH C 2 302 133 HOH HOH . MA 9 HOH C 3 303 54 HOH HOH . MA 9 HOH C 4 304 109 HOH HOH . MA 9 HOH C 5 305 71 HOH HOH . MA 9 HOH C 6 306 178 HOH HOH . MA 9 HOH C 7 307 55 HOH HOH . MA 9 HOH C 8 308 155 HOH HOH . MA 9 HOH C 9 309 98 HOH HOH . MA 9 HOH C 10 310 26 HOH HOH . MA 9 HOH C 11 311 72 HOH HOH . MA 9 HOH C 12 312 172 HOH HOH . MA 9 HOH C 13 313 196 HOH HOH . MA 9 HOH C 14 314 105 HOH HOH . MA 9 HOH C 15 315 198 HOH HOH . MA 9 HOH C 16 316 134 HOH HOH . MA 9 HOH C 17 317 152 HOH HOH . MA 9 HOH C 18 318 194 HOH HOH . MA 9 HOH C 19 319 163 HOH HOH . NA 9 HOH D 1 501 13 HOH HOH . NA 9 HOH D 2 502 18 HOH HOH . NA 9 HOH D 3 503 180 HOH HOH . NA 9 HOH D 4 504 35 HOH HOH . NA 9 HOH D 5 505 9 HOH HOH . NA 9 HOH D 6 506 36 HOH HOH . NA 9 HOH D 7 507 74 HOH HOH . NA 9 HOH D 8 508 41 HOH HOH . NA 9 HOH D 9 509 14 HOH HOH . NA 9 HOH D 10 510 6 HOH HOH . NA 9 HOH D 11 511 45 HOH HOH . NA 9 HOH D 12 512 61 HOH HOH . NA 9 HOH D 13 513 96 HOH HOH . NA 9 HOH D 14 514 184 HOH HOH . NA 9 HOH D 15 515 37 HOH HOH . NA 9 HOH D 16 516 19 HOH HOH . NA 9 HOH D 17 517 168 HOH HOH . NA 9 HOH D 18 518 3 HOH HOH . NA 9 HOH D 19 519 52 HOH HOH . NA 9 HOH D 20 520 101 HOH HOH . NA 9 HOH D 21 521 143 HOH HOH . NA 9 HOH D 22 522 112 HOH HOH . NA 9 HOH D 23 523 87 HOH HOH . NA 9 HOH D 24 524 2 HOH HOH . NA 9 HOH D 25 525 170 HOH HOH . NA 9 HOH D 26 526 135 HOH HOH . NA 9 HOH D 27 527 90 HOH HOH . NA 9 HOH D 28 528 73 HOH HOH . NA 9 HOH D 29 529 83 HOH HOH . NA 9 HOH D 30 530 117 HOH HOH . NA 9 HOH D 31 531 50 HOH HOH . NA 9 HOH D 32 532 171 HOH HOH . NA 9 HOH D 33 533 141 HOH HOH . NA 9 HOH D 34 534 164 HOH HOH . NA 9 HOH D 35 535 192 HOH HOH . NA 9 HOH D 36 536 51 HOH HOH . NA 9 HOH D 37 537 94 HOH HOH . NA 9 HOH D 38 538 149 HOH HOH . NA 9 HOH D 39 539 81 HOH HOH . NA 9 HOH D 40 540 136 HOH HOH . NA 9 HOH D 41 541 173 HOH HOH . NA 9 HOH D 42 542 92 HOH HOH . NA 9 HOH D 43 543 53 HOH HOH . NA 9 HOH D 44 544 150 HOH HOH . OA 9 HOH E 1 301 183 HOH HOH . OA 9 HOH E 2 302 16 HOH HOH . OA 9 HOH E 3 303 80 HOH HOH . OA 9 HOH E 4 304 137 HOH HOH . OA 9 HOH E 5 305 46 HOH HOH . OA 9 HOH E 6 306 32 HOH HOH . OA 9 HOH E 7 307 153 HOH HOH . OA 9 HOH E 8 308 147 HOH HOH . OA 9 HOH E 9 309 40 HOH HOH . OA 9 HOH E 10 310 47 HOH HOH . OA 9 HOH E 11 311 138 HOH HOH . OA 9 HOH E 12 312 156 HOH HOH . OA 9 HOH E 13 313 195 HOH HOH . OA 9 HOH E 14 314 175 HOH HOH . OA 9 HOH E 15 315 157 HOH HOH . OA 9 HOH E 16 316 78 HOH HOH . OA 9 HOH E 17 317 165 HOH HOH . PA 9 HOH F 1 501 10 HOH HOH . PA 9 HOH F 2 502 190 HOH HOH . PA 9 HOH F 3 503 38 HOH HOH . PA 9 HOH F 4 504 162 HOH HOH . PA 9 HOH F 5 505 185 HOH HOH . PA 9 HOH F 6 506 108 HOH HOH . PA 9 HOH F 7 507 11 HOH HOH . PA 9 HOH F 8 508 82 HOH HOH . PA 9 HOH F 9 509 28 HOH HOH . PA 9 HOH F 10 510 104 HOH HOH . PA 9 HOH F 11 511 77 HOH HOH . PA 9 HOH F 12 512 20 HOH HOH . PA 9 HOH F 13 513 44 HOH HOH . PA 9 HOH F 14 514 8 HOH HOH . PA 9 HOH F 15 515 59 HOH HOH . PA 9 HOH F 16 516 62 HOH HOH . PA 9 HOH F 17 517 27 HOH HOH . PA 9 HOH F 18 518 30 HOH HOH . PA 9 HOH F 19 519 110 HOH HOH . PA 9 HOH F 20 520 177 HOH HOH . PA 9 HOH F 21 521 169 HOH HOH . PA 9 HOH F 22 522 68 HOH HOH . PA 9 HOH F 23 523 76 HOH HOH . PA 9 HOH F 24 524 100 HOH HOH . PA 9 HOH F 25 525 193 HOH HOH . PA 9 HOH F 26 526 120 HOH HOH . PA 9 HOH F 27 527 65 HOH HOH . PA 9 HOH F 28 528 97 HOH HOH . PA 9 HOH F 29 529 91 HOH HOH . PA 9 HOH F 30 530 145 HOH HOH . PA 9 HOH F 31 531 60 HOH HOH . PA 9 HOH F 32 532 154 HOH HOH . PA 9 HOH F 33 533 57 HOH HOH . PA 9 HOH F 34 534 75 HOH HOH . PA 9 HOH F 35 535 161 HOH HOH . PA 9 HOH F 36 536 174 HOH HOH . PA 9 HOH F 37 537 144 HOH HOH . PA 9 HOH F 38 538 114 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 5 _atom_site.Cartn_x 24.838 _atom_site.Cartn_y 16.103 _atom_site.Cartn_z 33.893 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #