data_6DY0
#
_model_server_result.job_id            n45lcqKjw2pg7PZ-4eBIlg 
_model_server_result.datetime_utc      '2024-11-15 00:29:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dy0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    6DY0 
#
_exptl.entry_id    6DY0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DY0 
_cell.length_a            157.871 
_cell.length_b            157.871 
_cell.length_c            157.871 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DY0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        212 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 19 A ASN 39 1_555 C C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale2 A ND2 ASN 89 A ASN 109 1_555 D C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 B SG CYS 1 B CYS 128 1_555 S C18 HJA . B HJA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 283 n n 
C1 O1 NAG sing 284 n n 
C1 O5 NAG sing 285 n n 
C1 H1 NAG sing 286 n n 
C2 C3 NAG sing 287 n n 
C2 N2 NAG sing 288 n n 
C2 H2 NAG sing 289 n n 
C3 C4 NAG sing 290 n n 
C3 O3 NAG sing 291 n n 
C3 H3 NAG sing 292 n n 
C4 C5 NAG sing 293 n n 
C4 O4 NAG sing 294 n n 
C4 H4 NAG sing 295 n n 
C5 C6 NAG sing 296 n n 
C5 O5 NAG sing 297 n n 
C5 H5 NAG sing 298 n n 
C6 O6 NAG sing 299 n n 
C6 H61 NAG sing 300 n n 
C6 H62 NAG sing 301 n n 
C7 C8 NAG sing 302 n n 
C7 N2 NAG sing 303 n n 
C7 O7 NAG doub 304 n n 
C8 H81 NAG sing 305 n n 
C8 H82 NAG sing 306 n n 
C8 H83 NAG sing 307 n n 
N2 HN2 NAG sing 308 n n 
O1 HO1 NAG sing 309 n n 
O3 HO3 NAG sing 310 n n 
O4 HO4 NAG sing 311 n n 
O6 HO6 NAG sing 312 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6DY0 
_atom_sites.fract_transf_matrix[1][1]    0.006334 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006334 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006334 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 201 1 NAG NAG . 
D 3 NAG A 1 202 2 NAG NAG . 
E 4 CL A 1 203 7 CL CL . 
F 4 CL A 1 204 10 CL CL . 
G 4 CL A 1 205 11 CL CL . 
H 4 CL A 1 206 12 CL CL . 
I 5 TON A 1 207 1 TON TON . 
J 5 TON A 1 208 2 TON TON . 
K 4 CL B 1 401 1 CL CL . 
L 4 CL B 1 402 2 CL CL . 
M 4 CL B 1 403 3 CL CL . 
N 4 CL B 1 404 4 CL CL . 
O 4 CL B 1 405 5 CL CL . 
P 4 CL B 1 406 6 CL CL . 
Q 4 CL B 1 407 8 CL CL . 
R 4 CL B 1 408 9 CL CL . 
S 6 HJA B 1 409 1 HJA WTF . 
T 7 HOH A 1 301 26 HOH HOH . 
T 7 HOH A 2 302 1 HOH HOH . 
T 7 HOH A 3 303 19 HOH HOH . 
T 7 HOH A 4 304 31 HOH HOH . 
T 7 HOH A 5 305 30 HOH HOH . 
U 7 HOH B 1 501 25 HOH HOH . 
U 7 HOH B 2 502 3 HOH HOH . 
U 7 HOH B 3 503 2 HOH HOH . 
U 7 HOH B 4 504 27 HOH HOH . 
U 7 HOH B 5 505 23 HOH HOH . 
U 7 HOH B 6 506 13 HOH HOH . 
U 7 HOH B 7 507 8 HOH HOH . 
U 7 HOH B 8 508 12 HOH HOH . 
U 7 HOH B 9 509 4 HOH HOH . 
U 7 HOH B 10 510 18 HOH HOH . 
U 7 HOH B 11 511 6 HOH HOH . 
U 7 HOH B 12 512 10 HOH HOH . 
U 7 HOH B 13 513 7 HOH HOH . 
U 7 HOH B 14 514 14 HOH HOH . 
U 7 HOH B 15 515 28 HOH HOH . 
U 7 HOH B 16 516 16 HOH HOH . 
U 7 HOH B 17 517 9 HOH HOH . 
U 7 HOH B 18 518 17 HOH HOH . 
U 7 HOH B 19 519 15 HOH HOH . 
U 7 HOH B 20 520 21 HOH HOH . 
U 7 HOH B 21 521 5 HOH HOH . 
U 7 HOH B 22 522 11 HOH HOH . 
U 7 HOH B 23 523 22 HOH HOH . 
U 7 HOH B 24 524 32 HOH HOH . 
U 7 HOH B 25 525 20 HOH HOH . 
U 7 HOH B 26 526 24 HOH HOH . 
U 7 HOH B 27 527 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 3 -29.471 12.703 -26.493 1 120.66 ? C1 NAG 202 A 1 
HETATM 2 C C2 NAG . . . D 3 -28.697 13.733 -27.313 1 127.53 ? C2 NAG 202 A 1 
HETATM 3 C C3 NAG . . . D 3 -28.343 13.158 -28.681 1 123.99 ? C3 NAG 202 A 1 
HETATM 4 C C4 NAG . . . D 3 -27.617 11.827 -28.528 1 126.98 ? C4 NAG 202 A 1 
HETATM 5 C C5 NAG . . . D 3 -28.424 10.878 -27.644 1 120.18 ? C5 NAG 202 A 1 
HETATM 6 C C6 NAG . . . D 3 -27.696 9.59 -27.338 1 106.93 ? C6 NAG 202 A 1 
HETATM 7 C C7 NAG . . . D 3 -29.377 15.981 -26.593 1 106.84 ? C7 NAG 202 A 1 
HETATM 8 C C8 NAG . . . D 3 -30.234 17.173 -26.895 1 87.57 ? C8 NAG 202 A 1 
HETATM 9 N N2 NAG . . . D 3 -29.459 14.964 -27.457 1 121 ? N2 NAG 202 A 1 
HETATM 10 O O3 NAG . . . D 3 -27.519 14.082 -29.382 1 122.8 ? O3 NAG 202 A 1 
HETATM 11 O O4 NAG . . . D 3 -27.429 11.233 -29.808 1 120.34 ? O4 NAG 202 A 1 
HETATM 12 O O5 NAG . . . D 3 -28.702 11.502 -26.382 1 123.33 ? O5 NAG 202 A 1 
HETATM 13 O O6 NAG . . . D 3 -26.492 9.829 -26.622 1 90.74 ? O6 NAG 202 A 1 
HETATM 14 O O7 NAG . . . D 3 -28.646 15.94 -25.608 1 115.37 ? O7 NAG 202 A 1 
HETATM 15 H H1 NAG . . . D 3 -30.315 12.504 -26.94 1 144.79 ? H1 NAG 202 A 1 
HETATM 16 H H2 NAG . . . D 3 -27.865 13.935 -26.845 1 153.04 ? H2 NAG 202 A 1 
HETATM 17 H H3 NAG . . . D 3 -29.164 13.016 -29.188 1 148.79 ? H3 NAG 202 A 1 
HETATM 18 H H4 NAG . . . D 3 -26.746 11.983 -28.117 1 152.38 ? H4 NAG 202 A 1 
HETATM 19 H H5 NAG . . . D 3 -29.267 10.67 -28.089 1 144.21 ? H5 NAG 202 A 1 
HETATM 20 H H61 NAG . . . D 3 -27.483 9.137 -28.177 1 128.32 ? H61 NAG 202 A 1 
HETATM 21 H H62 NAG . . . D 3 -28.276 9.015 -26.804 1 128.32 ? H62 NAG 202 A 1 
HETATM 22 H H81 NAG . . . D 3 -31.172 16.903 -26.908 1 105.08 ? H81 NAG 202 A 1 
HETATM 23 H H82 NAG . . . D 3 -29.989 17.537 -27.767 1 105.08 ? H82 NAG 202 A 1 
HETATM 24 H H83 NAG . . . D 3 -30.101 17.853 -26.208 1 105.08 ? H83 NAG 202 A 1 
HETATM 25 H HN2 NAG . . . D 3 -30.019 15.046 -28.172 1 145.2 ? HN2 NAG 202 A 1 
HETATM 26 H HO3 NAG . . . D 3 -27.255 13.72 -30.149 1 147.36 ? HO3 NAG 202 A 1 
HETATM 27 H HO4 NAG . . . D 3 -27.085 10.42 -29.709 1 144.41 ? HO4 NAG 202 A 1 
HETATM 28 H HO6 NAG . . . D 3 -26.545 10.614 -26.209 1 108.89 ? HO6 NAG 202 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#