data_6DY0 # _model_server_result.job_id 31hsqVDjST6xJlXmEr1Fmg _model_server_result.datetime_utc '2024-11-15 00:41:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":409}' # _entry.id 6DY0 # _exptl.entry_id 6DY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.433 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-amino-2-{[(4-cyclohexylbutoxy)carbonyl]amino}propanethioic S-acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DY0 _cell.length_a 157.871 _cell.length_b 157.871 _cell.length_c 157.871 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 19 A ASN 39 1_555 C C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 89 A ASN 109 1_555 D C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 B SG CYS 1 B CYS 128 1_555 S C18 HJA . B HJA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? # _chem_comp.formula 'C14 H26 N2 O3 S' _chem_comp.formula_weight 302.433 _chem_comp.id HJA _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-amino-2-{[(4-cyclohexylbutoxy)carbonyl]amino}propanethioic S-acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O06 C05 HJA doub 150 n n C05 N04 HJA sing 151 n n C05 O07 HJA sing 152 n n N04 C03 HJA sing 153 n n O07 C08 HJA sing 154 n n C08 C09 HJA sing 155 n n C03 C02 HJA sing 156 n n C03 C18 HJA sing 157 n n C10 C09 HJA sing 158 n n C10 C11 HJA sing 159 n n C02 N01 HJA sing 160 n n C16 C17 HJA sing 161 n n C16 C15 HJA sing 162 n n C17 C12 HJA sing 163 n n C18 O20 HJA doub 164 n n C12 C11 HJA sing 165 n n C12 C13 HJA sing 166 n n C15 C14 HJA sing 167 n n C13 C14 HJA sing 168 n n N01 H012 HJA sing 169 n n N01 H1 HJA sing 170 n n C02 H021 HJA sing 171 n n C02 H022 HJA sing 172 n n C03 H031 HJA sing 173 n n N04 H041 HJA sing 174 n n C08 H082 HJA sing 175 n n C08 H081 HJA sing 176 n n C09 H092 HJA sing 177 n n C09 H091 HJA sing 178 n n C10 H101 HJA sing 179 n n C10 H102 HJA sing 180 n n C11 H112 HJA sing 181 n n C11 H111 HJA sing 182 n n C12 H121 HJA sing 183 n n C13 H132 HJA sing 184 n n C13 H131 HJA sing 185 n n C14 H141 HJA sing 186 n n C14 H142 HJA sing 187 n n C15 H152 HJA sing 188 n n C15 H151 HJA sing 189 n n C16 H161 HJA sing 190 n n C16 H162 HJA sing 191 n n C17 H172 HJA sing 192 n n C17 H171 HJA sing 193 n n C18 S1 HJA sing 194 n n S1 H2 HJA sing 195 n n # _atom_sites.entry_id 6DY0 _atom_sites.fract_transf_matrix[1][1] 0.006334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 201 1 NAG NAG . D 3 NAG A 1 202 2 NAG NAG . E 4 CL A 1 203 7 CL CL . F 4 CL A 1 204 10 CL CL . G 4 CL A 1 205 11 CL CL . H 4 CL A 1 206 12 CL CL . I 5 TON A 1 207 1 TON TON . J 5 TON A 1 208 2 TON TON . K 4 CL B 1 401 1 CL CL . L 4 CL B 1 402 2 CL CL . M 4 CL B 1 403 3 CL CL . N 4 CL B 1 404 4 CL CL . O 4 CL B 1 405 5 CL CL . P 4 CL B 1 406 6 CL CL . Q 4 CL B 1 407 8 CL CL . R 4 CL B 1 408 9 CL CL . S 6 HJA B 1 409 1 HJA WTF . T 7 HOH A 1 301 26 HOH HOH . T 7 HOH A 2 302 1 HOH HOH . T 7 HOH A 3 303 19 HOH HOH . T 7 HOH A 4 304 31 HOH HOH . T 7 HOH A 5 305 30 HOH HOH . U 7 HOH B 1 501 25 HOH HOH . U 7 HOH B 2 502 3 HOH HOH . U 7 HOH B 3 503 2 HOH HOH . U 7 HOH B 4 504 27 HOH HOH . U 7 HOH B 5 505 23 HOH HOH . U 7 HOH B 6 506 13 HOH HOH . U 7 HOH B 7 507 8 HOH HOH . U 7 HOH B 8 508 12 HOH HOH . U 7 HOH B 9 509 4 HOH HOH . U 7 HOH B 10 510 18 HOH HOH . U 7 HOH B 11 511 6 HOH HOH . U 7 HOH B 12 512 10 HOH HOH . U 7 HOH B 13 513 7 HOH HOH . U 7 HOH B 14 514 14 HOH HOH . U 7 HOH B 15 515 28 HOH HOH . U 7 HOH B 16 516 16 HOH HOH . U 7 HOH B 17 517 9 HOH HOH . U 7 HOH B 18 518 17 HOH HOH . U 7 HOH B 19 519 15 HOH HOH . U 7 HOH B 20 520 21 HOH HOH . U 7 HOH B 21 521 5 HOH HOH . U 7 HOH B 22 522 11 HOH HOH . U 7 HOH B 23 523 22 HOH HOH . U 7 HOH B 24 524 32 HOH HOH . U 7 HOH B 25 525 20 HOH HOH . U 7 HOH B 26 526 24 HOH HOH . U 7 HOH B 27 527 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 HJA . . . S 6 -16.927 17.451 5.338 1 80.31 ? N01 HJA 409 B 1 HETATM 2 C C02 HJA . . . S 6 -17.872 17.126 4.289 1 93.44 ? C02 HJA 409 B 1 HETATM 3 C C03 HJA . . . S 6 -19.068 16.375 4.86 1 104.1 ? C03 HJA 409 B 1 HETATM 4 N N04 HJA . . . S 6 -19.642 15.535 3.812 1 101.45 ? N04 HJA 409 B 1 HETATM 5 C C05 HJA . . . S 6 -20.652 14.52 4.161 1 108.6 ? C05 HJA 409 B 1 HETATM 6 O O06 HJA . . . S 6 -20.899 14.281 5.296 1 97.89 ? O06 HJA 409 B 1 HETATM 7 O O07 HJA . . . S 6 -21.353 13.845 3.129 1 92.43 ? O07 HJA 409 B 1 HETATM 8 C C08 HJA . . . S 6 -22.645 14.389 2.916 1 66.97 ? C08 HJA 409 B 1 HETATM 9 C C09 HJA . . . S 6 -23.124 13.913 1.52 1 66.58 ? C09 HJA 409 B 1 HETATM 10 C C18 HJA . . . S 6 -20.106 17.379 5.337 1 106.2 ? C18 HJA 409 B 1 HETATM 11 O O20 HJA . . . S 6 -19.725 18.425 5.731 1 109.93 ? O20 HJA 409 B 1 HETATM 12 C C10 HJA . . . S 6 -23.576 15.085 0.607 1 76.9 ? C10 HJA 409 B 1 HETATM 13 C C11 HJA . . . S 6 -24.895 14.752 -0.151 1 91.47 ? C11 HJA 409 B 1 HETATM 14 C C12 HJA . . . S 6 -24.701 14.443 -1.656 1 84.56 ? C12 HJA 409 B 1 HETATM 15 C C13 HJA . . . S 6 -24.26 15.698 -2.403 1 93.36 ? C13 HJA 409 B 1 HETATM 16 C C14 HJA . . . S 6 -24.287 15.478 -3.917 1 98.34 ? C14 HJA 409 B 1 HETATM 17 C C15 HJA . . . S 6 -23.958 14.035 -4.292 1 96.43 ? C15 HJA 409 B 1 HETATM 18 C C16 HJA . . . S 6 -23.087 13.334 -3.249 1 95.53 ? C16 HJA 409 B 1 HETATM 19 C C17 HJA . . . S 6 -23.698 13.305 -1.852 1 72.65 ? C17 HJA 409 B 1 HETATM 20 H H012 HJA . . . S 6 -17.338 17.424 6.127 1 96.37 ? H012 HJA 409 B 1 HETATM 21 H H1 HJA . . . S 6 -16.6 18.267 5.201 1 96.37 ? H1 HJA 409 B 1 HETATM 22 H H021 HJA . . . S 6 -18.179 17.946 3.871 1 112.13 ? H021 HJA 409 B 1 HETATM 23 H H022 HJA . . . S 6 -17.434 16.572 3.624 1 112.13 ? H022 HJA 409 B 1 HETATM 24 H H031 HJA . . . S 6 -18.782 15.821 5.603 1 124.92 ? H031 HJA 409 B 1 HETATM 25 H H041 HJA . . . S 6 -19.335 15.577 3.01 1 121.74 ? H041 HJA 409 B 1 HETATM 26 H H082 HJA . . . S 6 -22.603 15.358 2.937 1 80.37 ? H082 HJA 409 B 1 HETATM 27 H H081 HJA . . . S 6 -23.254 14.07 3.6 1 80.37 ? H081 HJA 409 B 1 HETATM 28 H H092 HJA . . . S 6 -23.869 13.302 1.636 1 79.9 ? H092 HJA 409 B 1 HETATM 29 H H091 HJA . . . S 6 -22.397 13.44 1.084 1 79.9 ? H091 HJA 409 B 1 HETATM 30 H H101 HJA . . . S 6 -22.878 15.269 -0.04 1 92.29 ? H101 HJA 409 B 1 HETATM 31 H H102 HJA . . . S 6 -23.716 15.874 1.154 1 92.29 ? H102 HJA 409 B 1 HETATM 32 H H112 HJA . . . S 6 -25.497 15.508 -0.068 1 109.76 ? H112 HJA 409 B 1 HETATM 33 H H111 HJA . . . S 6 -25.306 13.982 0.271 1 109.76 ? H111 HJA 409 B 1 HETATM 34 H H121 HJA . . . S 6 -25.553 14.159 -2.022 1 101.48 ? H121 HJA 409 B 1 HETATM 35 H H132 HJA . . . S 6 -23.356 15.926 -2.133 1 112.04 ? H132 HJA 409 B 1 HETATM 36 H H131 HJA . . . S 6 -24.857 16.428 -2.178 1 112.04 ? H131 HJA 409 B 1 HETATM 37 H H141 HJA . . . S 6 -25.172 15.695 -4.25 1 118.01 ? H141 HJA 409 B 1 HETATM 38 H H142 HJA . . . S 6 -23.636 16.066 -4.331 1 118.01 ? H142 HJA 409 B 1 HETATM 39 H H152 HJA . . . S 6 -24.788 13.542 -4.387 1 115.72 ? H152 HJA 409 B 1 HETATM 40 H H151 HJA . . . S 6 -23.489 14.034 -5.141 1 115.72 ? H151 HJA 409 B 1 HETATM 41 H H161 HJA . . . S 6 -22.935 12.421 -3.538 1 114.63 ? H161 HJA 409 B 1 HETATM 42 H H162 HJA . . . S 6 -22.234 13.794 -3.202 1 114.63 ? H162 HJA 409 B 1 HETATM 43 H H172 HJA . . . S 6 -22.99 13.393 -1.195 1 87.18 ? H172 HJA 409 B 1 HETATM 44 H H171 HJA . . . S 6 -24.153 12.458 -1.723 1 87.18 ? H171 HJA 409 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 44 #