data_6DY1 # _model_server_result.job_id USxtSHsb8d8ivE6-4-vVxw _model_server_result.datetime_utc '2024-11-15 00:29:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":205}' # _entry.id 6DY1 # _exptl.entry_id 6DY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.429 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{2-[4-(1,1,3,3-TETRAMETHYLBUTYL)PHENOXY]ETHOXY}ETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DY1 _cell.length_a 159.351 _cell.length_b 159.351 _cell.length_c 159.351 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 19 A ASN 39 1_555 C C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 89 A ASN 109 1_555 D C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B ND2 ASN 208 B ASN 335 1_555 I C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C18 H30 O3' _chem_comp.formula_weight 294.429 _chem_comp.id TON _chem_comp.mon_nstd_flag . _chem_comp.name 2-{2-[4-(1,1,3,3-TETRAMETHYLBUTYL)PHENOXY]ETHOXY}ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 TON doub 383 n y C13 C18 TON sing 384 n y C13 H13 TON sing 385 n n C14 C15 TON sing 386 n y C14 H14 TON sing 387 n n C15 O1 TON sing 388 n n C15 C16 TON doub 389 n y O1 C1 TON sing 390 n n C1 C2 TON sing 391 n n C1 H11 TON sing 392 n n C1 H12 TON sing 393 n n C2 O2 TON sing 394 n n C2 H21 TON sing 395 n n C2 H22 TON sing 396 n n O2 C3 TON sing 397 n n C3 C4 TON sing 398 n n C3 H31 TON sing 399 n n C3 H32 TON sing 400 n n C4 O3 TON sing 401 n n C4 H41 TON sing 402 n n C4 H42 TON sing 403 n n O3 HO3 TON sing 404 n n C16 C17 TON sing 405 n y C16 H162 TON sing 406 n n C17 C18 TON doub 407 n y C17 H17 TON sing 408 n n C18 C5 TON sing 409 n n C5 C8 TON sing 410 n n C5 C7 TON sing 411 n n C5 C6 TON sing 412 n n C8 H81 TON sing 413 n n C8 H82 TON sing 414 n n C8 H83 TON sing 415 n n C7 H71 TON sing 416 n n C7 H72 TON sing 417 n n C7 H73 TON sing 418 n n C6 C9 TON sing 419 n n C6 H61 TON sing 420 n n C6 H62 TON sing 421 n n C9 C12 TON sing 422 n n C9 C11 TON sing 423 n n C9 C10 TON sing 424 n n C12 H121 TON sing 425 n n C12 H122 TON sing 426 n n C12 H123 TON sing 427 n n C11 H111 TON sing 428 n n C11 H112 TON sing 429 n n C11 H113 TON sing 430 n n C10 H101 TON sing 431 n n C10 H102 TON sing 432 n n C10 H103 TON sing 433 n n # _atom_sites.entry_id 6DY1 _atom_sites.fract_transf_matrix[1][1] 0.006275 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 201 1 NAG NAG . D 3 NAG A 1 202 2 NAG NAG . E 4 SO4 A 1 203 5 SO4 SO4 . F 5 CL A 1 204 5 CL CL . G 6 TON A 1 205 1 TON TON . H 6 TON A 1 206 2 TON TON . I 3 NAG B 1 401 3 NAG NAG . J 4 SO4 B 1 402 1 SO4 SO4 . K 4 SO4 B 1 403 2 SO4 SO4 . L 4 SO4 B 1 404 3 SO4 SO4 . M 4 SO4 B 1 405 4 SO4 SO4 . N 5 CL B 1 406 1 CL CL . O 5 CL B 1 407 2 CL CL . P 5 CL B 1 408 3 CL CL . Q 5 CL B 1 409 4 CL CL . R 5 CL B 1 410 6 CL CL . S 5 CL B 1 411 7 CL CL . T 5 CL B 1 412 8 CL CL . U 5 CL B 1 413 9 CL CL . V 5 CL B 1 414 10 CL CL . W 5 CL B 1 415 11 CL CL . X 5 CL B 1 416 12 CL CL . Y 7 MYR B 1 417 1 MYR MYR . Z 8 HOH A 1 301 16 HOH HOH . Z 8 HOH A 2 302 3 HOH HOH . Z 8 HOH A 3 303 40 HOH HOH . Z 8 HOH A 4 304 5 HOH HOH . Z 8 HOH A 5 305 34 HOH HOH . Z 8 HOH A 6 306 86 HOH HOH . Z 8 HOH A 7 307 63 HOH HOH . Z 8 HOH A 8 308 77 HOH HOH . Z 8 HOH A 9 309 64 HOH HOH . Z 8 HOH A 10 310 32 HOH HOH . Z 8 HOH A 11 311 10 HOH HOH . Z 8 HOH A 12 312 52 HOH HOH . Z 8 HOH A 13 313 41 HOH HOH . Z 8 HOH A 14 314 55 HOH HOH . Z 8 HOH A 15 315 87 HOH HOH . Z 8 HOH A 16 316 20 HOH HOH . Z 8 HOH A 17 317 54 HOH HOH . Z 8 HOH A 18 318 36 HOH HOH . Z 8 HOH A 19 319 17 HOH HOH . Z 8 HOH A 20 320 53 HOH HOH . Z 8 HOH A 21 321 11 HOH HOH . Z 8 HOH A 22 322 68 HOH HOH . Z 8 HOH A 23 323 62 HOH HOH . Z 8 HOH A 24 324 22 HOH HOH . Z 8 HOH A 25 325 70 HOH HOH . AA 8 HOH B 1 501 79 HOH HOH . AA 8 HOH B 2 502 21 HOH HOH . AA 8 HOH B 3 503 6 HOH HOH . AA 8 HOH B 4 504 42 HOH HOH . AA 8 HOH B 5 505 1 HOH HOH . AA 8 HOH B 6 506 78 HOH HOH . AA 8 HOH B 7 507 27 HOH HOH . AA 8 HOH B 8 508 46 HOH HOH . AA 8 HOH B 9 509 15 HOH HOH . AA 8 HOH B 10 510 2 HOH HOH . AA 8 HOH B 11 511 67 HOH HOH . AA 8 HOH B 12 512 43 HOH HOH . AA 8 HOH B 13 513 12 HOH HOH . AA 8 HOH B 14 514 80 HOH HOH . AA 8 HOH B 15 515 9 HOH HOH . AA 8 HOH B 16 516 66 HOH HOH . AA 8 HOH B 17 517 18 HOH HOH . AA 8 HOH B 18 518 4 HOH HOH . AA 8 HOH B 19 519 47 HOH HOH . AA 8 HOH B 20 520 57 HOH HOH . AA 8 HOH B 21 521 60 HOH HOH . AA 8 HOH B 22 522 7 HOH HOH . AA 8 HOH B 23 523 65 HOH HOH . AA 8 HOH B 24 524 13 HOH HOH . AA 8 HOH B 25 525 14 HOH HOH . AA 8 HOH B 26 526 23 HOH HOH . AA 8 HOH B 27 527 76 HOH HOH . AA 8 HOH B 28 528 74 HOH HOH . AA 8 HOH B 29 529 24 HOH HOH . AA 8 HOH B 30 530 33 HOH HOH . AA 8 HOH B 31 531 31 HOH HOH . AA 8 HOH B 32 532 49 HOH HOH . AA 8 HOH B 33 533 84 HOH HOH . AA 8 HOH B 34 534 71 HOH HOH . AA 8 HOH B 35 535 19 HOH HOH . AA 8 HOH B 36 536 48 HOH HOH . AA 8 HOH B 37 537 81 HOH HOH . AA 8 HOH B 38 538 26 HOH HOH . AA 8 HOH B 39 539 44 HOH HOH . AA 8 HOH B 40 540 29 HOH HOH . AA 8 HOH B 41 541 30 HOH HOH . AA 8 HOH B 42 542 82 HOH HOH . AA 8 HOH B 43 543 58 HOH HOH . AA 8 HOH B 44 544 75 HOH HOH . AA 8 HOH B 45 545 37 HOH HOH . AA 8 HOH B 46 546 51 HOH HOH . AA 8 HOH B 47 547 73 HOH HOH . AA 8 HOH B 48 548 25 HOH HOH . AA 8 HOH B 49 549 83 HOH HOH . AA 8 HOH B 50 550 72 HOH HOH . AA 8 HOH B 51 551 45 HOH HOH . AA 8 HOH B 52 552 59 HOH HOH . AA 8 HOH B 53 553 8 HOH HOH . AA 8 HOH B 54 554 56 HOH HOH . AA 8 HOH B 55 555 50 HOH HOH . AA 8 HOH B 56 556 28 HOH HOH . AA 8 HOH B 57 557 89 HOH HOH . AA 8 HOH B 58 558 85 HOH HOH . AA 8 HOH B 59 559 88 HOH HOH . AA 8 HOH B 60 560 61 HOH HOH . AA 8 HOH B 61 561 35 HOH HOH . AA 8 HOH B 62 562 39 HOH HOH . AA 8 HOH B 63 563 38 HOH HOH . AA 8 HOH B 64 564 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 TON . . . G 6 -18.006 2.044 -5.864 1 83.98 ? C13 TON 205 A 1 HETATM 2 C C14 TON . . . G 6 -16.707 2.449 -5.536 1 84.39 ? C14 TON 205 A 1 HETATM 3 C C15 TON . . . G 6 -15.607 1.715 -5.976 1 72.95 ? C15 TON 205 A 1 HETATM 4 O O1 TON . . . G 6 -14.277 2.132 -5.641 1 68.64 ? O1 TON 205 A 1 HETATM 5 C C1 TON . . . G 6 -13.298 1.984 -6.677 1 85.12 ? C1 TON 205 A 1 HETATM 6 C C2 TON . . . G 6 -12.588 3.306 -7.027 1 91.99 ? C2 TON 205 A 1 HETATM 7 O O2 TON . . . G 6 -11.991 3.11 -8.31 1 97.01 ? O2 TON 205 A 1 HETATM 8 C C3 TON . . . G 6 -10.58 3.254 -8.422 1 92.08 ? C3 TON 205 A 1 HETATM 9 C C4 TON . . . G 6 -9.808 2.305 -7.479 1 83.77 ? C4 TON 205 A 1 HETATM 10 O O3 TON . . . G 6 -8.782 3.032 -6.836 1 81.33 ? O3 TON 205 A 1 HETATM 11 C C16 TON . . . G 6 -15.817 0.569 -6.732 1 75.64 ? C16 TON 205 A 1 HETATM 12 C C17 TON . . . G 6 -17.109 0.167 -7.055 1 83.88 ? C17 TON 205 A 1 HETATM 13 C C18 TON . . . G 6 -18.211 0.903 -6.629 1 76.96 ? C18 TON 205 A 1 HETATM 14 C C5 TON . . . G 6 -19.671 0.46 -7 1 54.01 ? C5 TON 205 A 1 HETATM 15 C C8 TON . . . G 6 -20.511 0.467 -5.726 1 53.11 ? C8 TON 205 A 1 HETATM 16 C C7 TON . . . G 6 -19.684 -0.969 -7.556 1 63.51 ? C7 TON 205 A 1 HETATM 17 C C6 TON . . . G 6 -20.336 1.512 -7.977 1 70.26 ? C6 TON 205 A 1 HETATM 18 C C9 TON . . . G 6 -19.972 1.472 -9.515 1 77.42 ? C9 TON 205 A 1 HETATM 19 C C12 TON . . . G 6 -18.489 1.293 -9.824 1 88.84 ? C12 TON 205 A 1 HETATM 20 C C11 TON . . . G 6 -20.391 2.834 -10.094 1 64.66 ? C11 TON 205 A 1 HETATM 21 C C10 TON . . . G 6 -20.794 0.408 -10.271 1 69.84 ? C10 TON 205 A 1 HETATM 22 H H13 TON . . . G 6 -18.735 2.544 -5.575 1 100.77 ? H13 TON 205 A 1 HETATM 23 H H14 TON . . . G 6 -16.577 3.218 -5.029 1 101.26 ? H14 TON 205 A 1 HETATM 24 H H11 TON . . . G 6 -12.632 1.34 -6.387 1 102.14 ? H11 TON 205 A 1 HETATM 25 H H12 TON . . . G 6 -13.735 1.644 -7.473 1 102.14 ? H12 TON 205 A 1 HETATM 26 H H21 TON . . . G 6 -13.233 4.03 -7.066 1 110.38 ? H21 TON 205 A 1 HETATM 27 H H22 TON . . . G 6 -11.905 3.502 -6.368 1 110.38 ? H22 TON 205 A 1 HETATM 28 H H31 TON . . . G 6 -10.318 3.067 -9.337 1 110.49 ? H31 TON 205 A 1 HETATM 29 H H32 TON . . . G 6 -10.341 4.169 -8.209 1 110.49 ? H32 TON 205 A 1 HETATM 30 H H41 TON . . . G 6 -10.415 1.943 -6.814 1 100.52 ? H41 TON 205 A 1 HETATM 31 H H42 TON . . . G 6 -9.42 1.579 -7.993 1 100.52 ? H42 TON 205 A 1 HETATM 32 H HO3 TON . . . G 6 -8.405 3.547 -7.398 1 97.59 ? HO3 TON 205 A 1 HETATM 33 H H162 TON . . . G 6 -15.09 0.071 -7.029 1 90.76 ? H162 TON 205 A 1 HETATM 34 H H17 TON . . . G 6 -17.237 -0.596 -7.57 1 100.65 ? H17 TON 205 A 1 HETATM 35 H H81 TON . . . G 6 -20.971 1.317 -5.647 1 63.73 ? H81 TON 205 A 1 HETATM 36 H H82 TON . . . G 6 -19.933 0.339 -4.957 1 63.73 ? H82 TON 205 A 1 HETATM 37 H H83 TON . . . G 6 -21.162 -0.251 -5.765 1 63.73 ? H83 TON 205 A 1 HETATM 38 H H71 TON . . . G 6 -19.266 -0.98 -8.432 1 76.21 ? H71 TON 205 A 1 HETATM 39 H H72 TON . . . G 6 -20.6 -1.279 -7.631 1 76.21 ? H72 TON 205 A 1 HETATM 40 H H73 TON . . . G 6 -19.193 -1.554 -6.957 1 76.21 ? H73 TON 205 A 1 HETATM 41 H H61 TON . . . G 6 -20.109 2.396 -7.649 1 84.31 ? H61 TON 205 A 1 HETATM 42 H H62 TON . . . G 6 -21.298 1.408 -7.904 1 84.31 ? H62 TON 205 A 1 HETATM 43 H H121 TON . . . G 6 -18.377 1.089 -10.765 1 106.6 ? H121 TON 205 A 1 HETATM 44 H H122 TON . . . G 6 -18.133 0.566 -9.29 1 106.6 ? H122 TON 205 A 1 HETATM 45 H H123 TON . . . G 6 -18.014 2.112 -9.612 1 106.6 ? H123 TON 205 A 1 HETATM 46 H H111 TON . . . G 6 -19.606 3.391 -10.213 1 77.59 ? H111 TON 205 A 1 HETATM 47 H H112 TON . . . G 6 -21.007 3.269 -9.484 1 77.59 ? H112 TON 205 A 1 HETATM 48 H H113 TON . . . G 6 -20.825 2.702 -10.951 1 77.59 ? H113 TON 205 A 1 HETATM 49 H H101 TON . . . G 6 -20.652 -0.461 -9.862 1 83.8 ? H101 TON 205 A 1 HETATM 50 H H102 TON . . . G 6 -20.511 0.379 -11.198 1 83.8 ? H102 TON 205 A 1 HETATM 51 H H103 TON . . . G 6 -21.735 0.636 -10.227 1 83.8 ? H103 TON 205 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 391 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #