data_6DY1 # _model_server_result.job_id tcDFcsfCfng8vmHRcOOhsg _model_server_result.datetime_utc '2024-11-15 00:42:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":417}' # _entry.id 6DY1 # _exptl.entry_id 6DY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DY1 _cell.length_a 159.351 _cell.length_b 159.351 _cell.length_c 159.351 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id Y _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 19 A ASN 39 1_555 C C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 89 A ASN 109 1_555 D C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B ND2 ASN 208 B ASN 335 1_555 I C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 237 n n C1 O2 MYR sing 238 n n C1 C2 MYR sing 239 n n O2 HO2 MYR sing 240 n n C2 C3 MYR sing 241 n n C2 H21 MYR sing 242 n n C2 H22 MYR sing 243 n n C3 C4 MYR sing 244 n n C3 H31 MYR sing 245 n n C3 H32 MYR sing 246 n n C4 C5 MYR sing 247 n n C4 H41 MYR sing 248 n n C4 H42 MYR sing 249 n n C5 C6 MYR sing 250 n n C5 H51 MYR sing 251 n n C5 H52 MYR sing 252 n n C6 C7 MYR sing 253 n n C6 H61 MYR sing 254 n n C6 H62 MYR sing 255 n n C7 C8 MYR sing 256 n n C7 H71 MYR sing 257 n n C7 H72 MYR sing 258 n n C8 C9 MYR sing 259 n n C8 H81 MYR sing 260 n n C8 H82 MYR sing 261 n n C9 C10 MYR sing 262 n n C9 H91 MYR sing 263 n n C9 H92 MYR sing 264 n n C10 C11 MYR sing 265 n n C10 H101 MYR sing 266 n n C10 H102 MYR sing 267 n n C11 C12 MYR sing 268 n n C11 H111 MYR sing 269 n n C11 H112 MYR sing 270 n n C12 C13 MYR sing 271 n n C12 H121 MYR sing 272 n n C12 H122 MYR sing 273 n n C13 C14 MYR sing 274 n n C13 H131 MYR sing 275 n n C13 H132 MYR sing 276 n n C14 H141 MYR sing 277 n n C14 H142 MYR sing 278 n n C14 H143 MYR sing 279 n n # _atom_sites.entry_id 6DY1 _atom_sites.fract_transf_matrix[1][1] 0.006275 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 201 1 NAG NAG . D 3 NAG A 1 202 2 NAG NAG . E 4 SO4 A 1 203 5 SO4 SO4 . F 5 CL A 1 204 5 CL CL . G 6 TON A 1 205 1 TON TON . H 6 TON A 1 206 2 TON TON . I 3 NAG B 1 401 3 NAG NAG . J 4 SO4 B 1 402 1 SO4 SO4 . K 4 SO4 B 1 403 2 SO4 SO4 . L 4 SO4 B 1 404 3 SO4 SO4 . M 4 SO4 B 1 405 4 SO4 SO4 . N 5 CL B 1 406 1 CL CL . O 5 CL B 1 407 2 CL CL . P 5 CL B 1 408 3 CL CL . Q 5 CL B 1 409 4 CL CL . R 5 CL B 1 410 6 CL CL . S 5 CL B 1 411 7 CL CL . T 5 CL B 1 412 8 CL CL . U 5 CL B 1 413 9 CL CL . V 5 CL B 1 414 10 CL CL . W 5 CL B 1 415 11 CL CL . X 5 CL B 1 416 12 CL CL . Y 7 MYR B 1 417 1 MYR MYR . Z 8 HOH A 1 301 16 HOH HOH . Z 8 HOH A 2 302 3 HOH HOH . Z 8 HOH A 3 303 40 HOH HOH . Z 8 HOH A 4 304 5 HOH HOH . Z 8 HOH A 5 305 34 HOH HOH . Z 8 HOH A 6 306 86 HOH HOH . Z 8 HOH A 7 307 63 HOH HOH . Z 8 HOH A 8 308 77 HOH HOH . Z 8 HOH A 9 309 64 HOH HOH . Z 8 HOH A 10 310 32 HOH HOH . Z 8 HOH A 11 311 10 HOH HOH . Z 8 HOH A 12 312 52 HOH HOH . Z 8 HOH A 13 313 41 HOH HOH . Z 8 HOH A 14 314 55 HOH HOH . Z 8 HOH A 15 315 87 HOH HOH . Z 8 HOH A 16 316 20 HOH HOH . Z 8 HOH A 17 317 54 HOH HOH . Z 8 HOH A 18 318 36 HOH HOH . Z 8 HOH A 19 319 17 HOH HOH . Z 8 HOH A 20 320 53 HOH HOH . Z 8 HOH A 21 321 11 HOH HOH . Z 8 HOH A 22 322 68 HOH HOH . Z 8 HOH A 23 323 62 HOH HOH . Z 8 HOH A 24 324 22 HOH HOH . Z 8 HOH A 25 325 70 HOH HOH . AA 8 HOH B 1 501 79 HOH HOH . AA 8 HOH B 2 502 21 HOH HOH . AA 8 HOH B 3 503 6 HOH HOH . AA 8 HOH B 4 504 42 HOH HOH . AA 8 HOH B 5 505 1 HOH HOH . AA 8 HOH B 6 506 78 HOH HOH . AA 8 HOH B 7 507 27 HOH HOH . AA 8 HOH B 8 508 46 HOH HOH . AA 8 HOH B 9 509 15 HOH HOH . AA 8 HOH B 10 510 2 HOH HOH . AA 8 HOH B 11 511 67 HOH HOH . AA 8 HOH B 12 512 43 HOH HOH . AA 8 HOH B 13 513 12 HOH HOH . AA 8 HOH B 14 514 80 HOH HOH . AA 8 HOH B 15 515 9 HOH HOH . AA 8 HOH B 16 516 66 HOH HOH . AA 8 HOH B 17 517 18 HOH HOH . AA 8 HOH B 18 518 4 HOH HOH . AA 8 HOH B 19 519 47 HOH HOH . AA 8 HOH B 20 520 57 HOH HOH . AA 8 HOH B 21 521 60 HOH HOH . AA 8 HOH B 22 522 7 HOH HOH . AA 8 HOH B 23 523 65 HOH HOH . AA 8 HOH B 24 524 13 HOH HOH . AA 8 HOH B 25 525 14 HOH HOH . AA 8 HOH B 26 526 23 HOH HOH . AA 8 HOH B 27 527 76 HOH HOH . AA 8 HOH B 28 528 74 HOH HOH . AA 8 HOH B 29 529 24 HOH HOH . AA 8 HOH B 30 530 33 HOH HOH . AA 8 HOH B 31 531 31 HOH HOH . AA 8 HOH B 32 532 49 HOH HOH . AA 8 HOH B 33 533 84 HOH HOH . AA 8 HOH B 34 534 71 HOH HOH . AA 8 HOH B 35 535 19 HOH HOH . AA 8 HOH B 36 536 48 HOH HOH . AA 8 HOH B 37 537 81 HOH HOH . AA 8 HOH B 38 538 26 HOH HOH . AA 8 HOH B 39 539 44 HOH HOH . AA 8 HOH B 40 540 29 HOH HOH . AA 8 HOH B 41 541 30 HOH HOH . AA 8 HOH B 42 542 82 HOH HOH . AA 8 HOH B 43 543 58 HOH HOH . AA 8 HOH B 44 544 75 HOH HOH . AA 8 HOH B 45 545 37 HOH HOH . AA 8 HOH B 46 546 51 HOH HOH . AA 8 HOH B 47 547 73 HOH HOH . AA 8 HOH B 48 548 25 HOH HOH . AA 8 HOH B 49 549 83 HOH HOH . AA 8 HOH B 50 550 72 HOH HOH . AA 8 HOH B 51 551 45 HOH HOH . AA 8 HOH B 52 552 59 HOH HOH . AA 8 HOH B 53 553 8 HOH HOH . AA 8 HOH B 54 554 56 HOH HOH . AA 8 HOH B 55 555 50 HOH HOH . AA 8 HOH B 56 556 28 HOH HOH . AA 8 HOH B 57 557 89 HOH HOH . AA 8 HOH B 58 558 85 HOH HOH . AA 8 HOH B 59 559 88 HOH HOH . AA 8 HOH B 60 560 61 HOH HOH . AA 8 HOH B 61 561 35 HOH HOH . AA 8 HOH B 62 562 39 HOH HOH . AA 8 HOH B 63 563 38 HOH HOH . AA 8 HOH B 64 564 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . Y 7 -23.303 14.33 1.59 1 53.05 ? C1 MYR 417 B 1 HETATM 2 O O1 MYR . . . Y 7 -23.986 15.362 1.743 1 68.23 ? O1 MYR 417 B 1 HETATM 3 O O2 MYR . . . Y 7 -22.182 14.228 2.123 1 51.42 ? O2 MYR 417 B 1 HETATM 4 C C2 MYR . . . Y 7 -23.838 13.225 0.737 1 42.97 ? C2 MYR 417 B 1 HETATM 5 C C3 MYR . . . Y 7 -23.367 13.513 -0.678 1 48.06 ? C3 MYR 417 B 1 HETATM 6 C C4 MYR . . . Y 7 -24.525 13.75 -1.631 1 40.3 ? C4 MYR 417 B 1 HETATM 7 C C5 MYR . . . Y 7 -24.178 13.138 -2.973 1 43.99 ? C5 MYR 417 B 1 HETATM 8 C C6 MYR . . . Y 7 -24.857 13.895 -4.093 1 49.59 ? C6 MYR 417 B 1 HETATM 9 C C7 MYR . . . Y 7 -24.311 13.387 -5.412 1 45.24 ? C7 MYR 417 B 1 HETATM 10 C C8 MYR . . . Y 7 -25.053 14.072 -6.536 1 36.73 ? C8 MYR 417 B 1 HETATM 11 C C9 MYR . . . Y 7 -24.259 13.997 -7.83 1 47.39 ? C9 MYR 417 B 1 HETATM 12 C C10 MYR . . . Y 7 -24.872 14.929 -8.861 1 46.62 ? C10 MYR 417 B 1 HETATM 13 C C11 MYR . . . Y 7 -26.263 14.46 -9.249 1 43.72 ? C11 MYR 417 B 1 HETATM 14 C C12 MYR . . . Y 7 -26.956 15.495 -10.112 1 55.03 ? C12 MYR 417 B 1 HETATM 15 C C13 MYR . . . Y 7 -26.788 15.185 -11.596 1 49.5 ? C13 MYR 417 B 1 HETATM 16 C C14 MYR . . . Y 7 -28.003 15.655 -12.374 1 38.06 ? C14 MYR 417 B 1 HETATM 17 H H21 MYR . . . Y 7 -24.927 13.204 0.779 1 51.56 ? H21 MYR 417 B 1 HETATM 18 H H22 MYR . . . Y 7 -23.453 12.263 1.077 1 51.56 ? H22 MYR 417 B 1 HETATM 19 H H31 MYR . . . Y 7 -22.773 12.672 -1.037 1 57.67 ? H31 MYR 417 B 1 HETATM 20 H H32 MYR . . . Y 7 -22.724 14.393 -0.67 1 57.67 ? H32 MYR 417 B 1 HETATM 21 H H41 MYR . . . Y 7 -24.701 14.82 -1.744 1 48.36 ? H41 MYR 417 B 1 HETATM 22 H H42 MYR . . . Y 7 -25.432 13.292 -1.237 1 48.36 ? H42 MYR 417 B 1 HETATM 23 H H51 MYR . . . Y 7 -24.495 12.095 -2.992 1 52.78 ? H51 MYR 417 B 1 HETATM 24 H H52 MYR . . . Y 7 -23.098 13.164 -3.118 1 52.78 ? H52 MYR 417 B 1 HETATM 25 H H61 MYR . . . Y 7 -24.661 14.962 -3.995 1 59.5 ? H61 MYR 417 B 1 HETATM 26 H H62 MYR . . . Y 7 -25.935 13.737 -4.05 1 59.5 ? H62 MYR 417 B 1 HETATM 27 H H71 MYR . . . Y 7 -24.447 12.307 -5.48 1 54.28 ? H71 MYR 417 B 1 HETATM 28 H H72 MYR . . . Y 7 -23.245 13.604 -5.482 1 54.28 ? H72 MYR 417 B 1 HETATM 29 H H81 MYR . . . Y 7 -25.225 15.116 -6.275 1 44.07 ? H81 MYR 417 B 1 HETATM 30 H H82 MYR . . . Y 7 -26.023 13.596 -6.675 1 44.07 ? H82 MYR 417 B 1 HETATM 31 H H91 MYR . . . Y 7 -24.267 12.974 -8.208 1 56.86 ? H91 MYR 417 B 1 HETATM 32 H H92 MYR . . . Y 7 -23.224 14.282 -7.645 1 56.86 ? H92 MYR 417 B 1 HETATM 33 H H101 MYR . . . Y 7 -24.238 14.96 -9.747 1 55.94 ? H101 MYR 417 B 1 HETATM 34 H H102 MYR . . . Y 7 -24.928 15.938 -8.453 1 55.94 ? H102 MYR 417 B 1 HETATM 35 H H111 MYR . . . Y 7 -26.852 14.283 -8.349 1 52.46 ? H111 MYR 417 B 1 HETATM 36 H H112 MYR . . . Y 7 -26.192 13.519 -9.794 1 52.46 ? H112 MYR 417 B 1 HETATM 37 H H121 MYR . . . Y 7 -26.542 16.48 -9.899 1 66.03 ? H121 MYR 417 B 1 HETATM 38 H H122 MYR . . . Y 7 -28.018 15.52 -9.866 1 66.03 ? H122 MYR 417 B 1 HETATM 39 H H131 MYR . . . Y 7 -26.658 14.112 -11.734 1 59.4 ? H131 MYR 417 B 1 HETATM 40 H H132 MYR . . . Y 7 -25.896 15.684 -11.975 1 59.4 ? H132 MYR 417 B 1 HETATM 41 H H141 MYR . . . Y 7 -28.72 16.108 -11.689 1 45.67 ? H141 MYR 417 B 1 HETATM 42 H H142 MYR . . . Y 7 -28.467 14.805 -12.874 1 45.67 ? H142 MYR 417 B 1 HETATM 43 H H143 MYR . . . Y 7 -27.697 16.391 -13.118 1 45.67 ? H143 MYR 417 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #