data_6DY4 # _model_server_result.job_id TaXIeAYdji1T9_njsdP1xw _model_server_result.datetime_utc '2024-10-18 19:33:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dy4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 6DY4 # _exptl.entry_id 6DY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DY4 _cell.length_a 35.57 _cell.length_b 48.37 _cell.length_c 116.721 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 B SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale1 A SG CYS 98 A CYS 98 1_555 D CAB HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? covale ? covale2 A SG CYS 101 A CYS 101 1_555 D CAC HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? covale ? covale3 B SG CYS 98 D CYS 98 1_555 F CAB HEC . D HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? covale ? covale4 B SG CYS 101 D CYS 101 1_555 F CAC HEC . D HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc1 A SD MET 7 A MET 7 1_555 D FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 E FE FE . D FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc3 A NE2 HIS 71 A HIS 71 1_555 E FE FE . D FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc4 A OD2 ASP 74 A ASP 74 1_555 C FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc5 A NE2 HIS 102 A HIS 102 1_555 D FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc6 C FE FE . A FE 201 1_555 G O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc7 C FE FE . A FE 201 1_555 G O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 C FE FE . A FE 201 1_555 B NE2 HIS 63 D HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc9 C FE FE . A FE 201 1_555 B NE2 HIS 67 D HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc10 C FE FE . A FE 201 1_555 H O HOH . D HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc11 G O HOH . A HOH 306 1_555 E FE FE . D FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc12 B SD MET 7 D MET 7 1_555 F FE HEC . D HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc13 B NE2 HIS 71 D HIS 71 1_555 E FE FE . D FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc14 B OE1 GLU 97 D GLU 97 1_555 E FE FE . D FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc15 B NE2 HIS 102 D HIS 102 1_555 F FE HEC . D HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc16 E FE FE . D FE 201 1_555 H O HOH . D HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DY4 _atom_sites.fract_transf_matrix[1][1] 0.028114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 201 2 FE FE . D 3 HEC A 1 202 2 HEC HEC . E 2 FE D 1 201 1 FE FE . F 3 HEC D 1 202 1 HEC HEC . G 4 HOH A 1 301 124 HOH HOH . G 4 HOH A 2 302 99 HOH HOH . G 4 HOH A 3 303 101 HOH HOH . G 4 HOH A 4 304 94 HOH HOH . G 4 HOH A 5 305 247 HOH HOH . G 4 HOH A 6 306 1 HOH HOH . G 4 HOH A 7 307 84 HOH HOH . G 4 HOH A 8 308 60 HOH HOH . G 4 HOH A 9 309 100 HOH HOH . G 4 HOH A 10 310 219 HOH HOH . G 4 HOH A 11 311 38 HOH HOH . G 4 HOH A 12 312 135 HOH HOH . G 4 HOH A 13 313 142 HOH HOH . G 4 HOH A 14 314 49 HOH HOH . G 4 HOH A 15 315 75 HOH HOH . G 4 HOH A 16 316 76 HOH HOH . G 4 HOH A 17 317 7 HOH HOH . G 4 HOH A 18 318 187 HOH HOH . G 4 HOH A 19 319 98 HOH HOH . G 4 HOH A 20 320 31 HOH HOH . G 4 HOH A 21 321 229 HOH HOH . G 4 HOH A 22 322 18 HOH HOH . G 4 HOH A 23 323 19 HOH HOH . G 4 HOH A 24 324 113 HOH HOH . G 4 HOH A 25 325 106 HOH HOH . G 4 HOH A 26 326 118 HOH HOH . G 4 HOH A 27 327 165 HOH HOH . G 4 HOH A 28 328 43 HOH HOH . G 4 HOH A 29 329 96 HOH HOH . G 4 HOH A 30 330 194 HOH HOH . G 4 HOH A 31 331 208 HOH HOH . G 4 HOH A 32 332 153 HOH HOH . G 4 HOH A 33 333 73 HOH HOH . G 4 HOH A 34 334 36 HOH HOH . G 4 HOH A 35 335 173 HOH HOH . G 4 HOH A 36 336 15 HOH HOH . G 4 HOH A 37 337 14 HOH HOH . G 4 HOH A 38 338 6 HOH HOH . G 4 HOH A 39 339 63 HOH HOH . G 4 HOH A 40 340 245 HOH HOH . G 4 HOH A 41 341 159 HOH HOH . G 4 HOH A 42 342 140 HOH HOH . G 4 HOH A 43 343 120 HOH HOH . G 4 HOH A 44 344 198 HOH HOH . G 4 HOH A 45 345 58 HOH HOH . G 4 HOH A 46 346 134 HOH HOH . G 4 HOH A 47 347 152 HOH HOH . G 4 HOH A 48 348 225 HOH HOH . G 4 HOH A 49 349 177 HOH HOH . G 4 HOH A 50 350 71 HOH HOH . G 4 HOH A 51 351 97 HOH HOH . G 4 HOH A 52 352 82 HOH HOH . G 4 HOH A 53 353 105 HOH HOH . G 4 HOH A 54 354 138 HOH HOH . G 4 HOH A 55 355 8 HOH HOH . G 4 HOH A 56 356 210 HOH HOH . G 4 HOH A 57 357 252 HOH HOH . G 4 HOH A 58 358 85 HOH HOH . G 4 HOH A 59 359 37 HOH HOH . G 4 HOH A 60 360 145 HOH HOH . G 4 HOH A 61 361 112 HOH HOH . G 4 HOH A 62 362 44 HOH HOH . G 4 HOH A 63 363 176 HOH HOH . G 4 HOH A 64 364 243 HOH HOH . G 4 HOH A 65 365 122 HOH HOH . G 4 HOH A 66 366 46 HOH HOH . G 4 HOH A 67 367 246 HOH HOH . G 4 HOH A 68 368 205 HOH HOH . G 4 HOH A 69 369 3 HOH HOH . G 4 HOH A 70 370 164 HOH HOH . G 4 HOH A 71 371 220 HOH HOH . G 4 HOH A 72 372 239 HOH HOH . G 4 HOH A 73 373 213 HOH HOH . G 4 HOH A 74 374 104 HOH HOH . G 4 HOH A 75 375 209 HOH HOH . G 4 HOH A 76 376 114 HOH HOH . G 4 HOH A 77 377 186 HOH HOH . G 4 HOH A 78 378 222 HOH HOH . G 4 HOH A 79 379 254 HOH HOH . G 4 HOH A 80 380 39 HOH HOH . G 4 HOH A 81 381 249 HOH HOH . G 4 HOH A 82 382 155 HOH HOH . G 4 HOH A 83 383 253 HOH HOH . G 4 HOH A 84 384 156 HOH HOH . G 4 HOH A 85 385 215 HOH HOH . G 4 HOH A 86 386 207 HOH HOH . G 4 HOH A 87 387 199 HOH HOH . G 4 HOH A 88 388 170 HOH HOH . G 4 HOH A 89 389 81 HOH HOH . G 4 HOH A 90 390 181 HOH HOH . G 4 HOH A 91 391 53 HOH HOH . G 4 HOH A 92 392 108 HOH HOH . G 4 HOH A 93 393 72 HOH HOH . G 4 HOH A 94 394 244 HOH HOH . G 4 HOH A 95 395 193 HOH HOH . G 4 HOH A 96 396 169 HOH HOH . G 4 HOH A 97 397 160 HOH HOH . G 4 HOH A 98 398 150 HOH HOH . G 4 HOH A 99 399 242 HOH HOH . G 4 HOH A 100 400 236 HOH HOH . G 4 HOH A 101 401 133 HOH HOH . G 4 HOH A 102 402 185 HOH HOH . G 4 HOH A 103 403 61 HOH HOH . G 4 HOH A 104 404 178 HOH HOH . G 4 HOH A 105 405 131 HOH HOH . G 4 HOH A 106 406 232 HOH HOH . G 4 HOH A 107 407 204 HOH HOH . G 4 HOH A 108 408 42 HOH HOH . H 4 HOH D 1 301 127 HOH HOH . H 4 HOH D 2 302 128 HOH HOH . H 4 HOH D 3 303 166 HOH HOH . H 4 HOH D 4 304 240 HOH HOH . H 4 HOH D 5 305 188 HOH HOH . H 4 HOH D 6 306 190 HOH HOH . H 4 HOH D 7 307 54 HOH HOH . H 4 HOH D 8 308 66 HOH HOH . H 4 HOH D 9 309 65 HOH HOH . H 4 HOH D 10 310 86 HOH HOH . H 4 HOH D 11 311 17 HOH HOH . H 4 HOH D 12 312 79 HOH HOH . H 4 HOH D 13 313 157 HOH HOH . H 4 HOH D 14 314 55 HOH HOH . H 4 HOH D 15 315 107 HOH HOH . H 4 HOH D 16 316 64 HOH HOH . H 4 HOH D 17 317 83 HOH HOH . H 4 HOH D 18 318 57 HOH HOH . H 4 HOH D 19 319 125 HOH HOH . H 4 HOH D 20 320 119 HOH HOH . H 4 HOH D 21 321 189 HOH HOH . H 4 HOH D 22 322 68 HOH HOH . H 4 HOH D 23 323 5 HOH HOH . H 4 HOH D 24 324 115 HOH HOH . H 4 HOH D 25 325 51 HOH HOH . H 4 HOH D 26 326 70 HOH HOH . H 4 HOH D 27 327 139 HOH HOH . H 4 HOH D 28 328 33 HOH HOH . H 4 HOH D 29 329 41 HOH HOH . H 4 HOH D 30 330 11 HOH HOH . H 4 HOH D 31 331 22 HOH HOH . H 4 HOH D 32 332 192 HOH HOH . H 4 HOH D 33 333 184 HOH HOH . H 4 HOH D 34 334 62 HOH HOH . H 4 HOH D 35 335 35 HOH HOH . H 4 HOH D 36 336 136 HOH HOH . H 4 HOH D 37 337 110 HOH HOH . H 4 HOH D 38 338 137 HOH HOH . H 4 HOH D 39 339 74 HOH HOH . H 4 HOH D 40 340 52 HOH HOH . H 4 HOH D 41 341 91 HOH HOH . H 4 HOH D 42 342 2 HOH HOH . H 4 HOH D 43 343 162 HOH HOH . H 4 HOH D 44 344 26 HOH HOH . H 4 HOH D 45 345 144 HOH HOH . H 4 HOH D 46 346 167 HOH HOH . H 4 HOH D 47 347 25 HOH HOH . H 4 HOH D 48 348 149 HOH HOH . H 4 HOH D 49 349 21 HOH HOH . H 4 HOH D 50 350 10 HOH HOH . H 4 HOH D 51 351 56 HOH HOH . H 4 HOH D 52 352 4 HOH HOH . H 4 HOH D 53 353 34 HOH HOH . H 4 HOH D 54 354 12 HOH HOH . H 4 HOH D 55 355 30 HOH HOH . H 4 HOH D 56 356 13 HOH HOH . H 4 HOH D 57 357 191 HOH HOH . H 4 HOH D 58 358 28 HOH HOH . H 4 HOH D 59 359 27 HOH HOH . H 4 HOH D 60 360 45 HOH HOH . H 4 HOH D 61 361 20 HOH HOH . H 4 HOH D 62 362 24 HOH HOH . H 4 HOH D 63 363 69 HOH HOH . H 4 HOH D 64 364 116 HOH HOH . H 4 HOH D 65 365 175 HOH HOH . H 4 HOH D 66 366 214 HOH HOH . H 4 HOH D 67 367 48 HOH HOH . H 4 HOH D 68 368 130 HOH HOH . H 4 HOH D 69 369 78 HOH HOH . H 4 HOH D 70 370 103 HOH HOH . H 4 HOH D 71 371 117 HOH HOH . H 4 HOH D 72 372 9 HOH HOH . H 4 HOH D 73 373 161 HOH HOH . H 4 HOH D 74 374 146 HOH HOH . H 4 HOH D 75 375 16 HOH HOH . H 4 HOH D 76 376 89 HOH HOH . H 4 HOH D 77 377 182 HOH HOH . H 4 HOH D 78 378 47 HOH HOH . H 4 HOH D 79 379 212 HOH HOH . H 4 HOH D 80 380 32 HOH HOH . H 4 HOH D 81 381 29 HOH HOH . H 4 HOH D 82 382 163 HOH HOH . H 4 HOH D 83 383 172 HOH HOH . H 4 HOH D 84 384 197 HOH HOH . H 4 HOH D 85 385 174 HOH HOH . H 4 HOH D 86 386 203 HOH HOH . H 4 HOH D 87 387 121 HOH HOH . H 4 HOH D 88 388 158 HOH HOH . H 4 HOH D 89 389 143 HOH HOH . H 4 HOH D 90 390 217 HOH HOH . H 4 HOH D 91 391 183 HOH HOH . H 4 HOH D 92 392 223 HOH HOH . H 4 HOH D 93 393 235 HOH HOH . H 4 HOH D 94 394 126 HOH HOH . H 4 HOH D 95 395 154 HOH HOH . H 4 HOH D 96 396 237 HOH HOH . H 4 HOH D 97 397 102 HOH HOH . H 4 HOH D 98 398 67 HOH HOH . H 4 HOH D 99 399 80 HOH HOH . H 4 HOH D 100 400 59 HOH HOH . H 4 HOH D 101 401 77 HOH HOH . H 4 HOH D 102 402 148 HOH HOH . H 4 HOH D 103 403 230 HOH HOH . H 4 HOH D 104 404 132 HOH HOH . H 4 HOH D 105 405 250 HOH HOH . H 4 HOH D 106 406 129 HOH HOH . H 4 HOH D 107 407 248 HOH HOH . H 4 HOH D 108 408 196 HOH HOH . H 4 HOH D 109 409 226 HOH HOH . H 4 HOH D 110 410 234 HOH HOH . H 4 HOH D 111 411 40 HOH HOH . H 4 HOH D 112 412 23 HOH HOH . H 4 HOH D 113 413 111 HOH HOH . H 4 HOH D 114 414 168 HOH HOH . H 4 HOH D 115 415 88 HOH HOH . H 4 HOH D 116 416 123 HOH HOH . H 4 HOH D 117 417 179 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -2.867 _atom_site.Cartn_y -5.186 _atom_site.Cartn_z -13.059 _atom_site.occupancy 0.97 _atom_site.B_iso_or_equiv 19.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 201 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #